ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26p09 |
|---|---|
| Clone Library Name | barley_pub |
>SSRA_ARATH (P45434) Translocon-associated protein alpha subunit precursor| (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha) Length = 258 Score = 63.9 bits (154), Expect = 9e-11 Identities = 28/39 (71%), Positives = 35/39 (89%) Frame = -3 Query: 374 GLWAYGQVQQLSKKTKKGPKVELGTGTTDANMDEWLEGT 258 GLWAY QVQ+L+KKTKK KVE+GT +T+A++DEWLEGT Sbjct: 205 GLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWLEGT 243
>KSG1_ARATH (P43288) Shaggy-related protein kinase alpha (EC 2.7.11.1)| (ASK-alpha) Length = 405 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Frame = +2 Query: 185 ILKCLARPSNLESICFSWLCP--LQMLYPPATRPCWHQLFQFRVPPWGLSLFS------- 337 I+K L P+ E C + P + +P WH++F R+PP + L S Sbjct: 282 IIKVLGTPTREEIKCMN---PNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSP 338 Query: 338 -LRAAALD 358 LR+AALD Sbjct: 339 NLRSAALD 346
>KSG3_ARATH (P43289) Shaggy-related protein kinase gamma (EC 2.7.11.1)| (ASK-gamma) Length = 409 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Frame = +2 Query: 185 ILKCLARPSNLESICFSWLCP--LQMLYPPATRPCWHQLFQFRVPPWGLSLFS------- 337 I+K L P+ E C + P + +P WH++F R+PP + L S Sbjct: 286 IIKVLGTPTREEIKCMN---PNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSP 342 Query: 338 -LRAAALD 358 LR AALD Sbjct: 343 NLRCAALD 350
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 17 IYLQQNCVSRKTICKVHSKVENGVNKMCSQET 112 +Y Q N ++ C V + + NG ++ CSQ T Sbjct: 5151 LYYQNNVFMSESKCWVENDINNGPHEFCSQHT 5182
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 17 IYLQQNCVSRKTICKVHSKVENGVNKMCSQET 112 +Y Q N ++ C V + + NG ++ CSQ T Sbjct: 5151 LYYQNNVFMSESKCWVENDINNGPHEFCSQHT 5182
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 17 IYLQQNCVSRKTICKVHSKVENGVNKMCSQET 112 +Y Q N ++ C V + + NG ++ CSQ T Sbjct: 5151 LYYQNNVFMSESKCWVENDINNGPHEFCSQHT 5182
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 17 IYLQQNCVSRKTICKVHSKVENGVNKMCSQET 112 +Y Q N ++ C V + + NG ++ CSQ T Sbjct: 5151 LYYQNNVFMSESKCWVENDINNGPHEFCSQHT 5182
>ALR_BORBU (O51182) Alanine racemase (EC 5.1.1.1)| Length = 372 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Frame = +2 Query: 23 LQQNCVSRKTICKVHSKVENGVNK-------MCSQETSSNTSALSSIQVTCEGLPSIASF 181 +++ C +K KVH K++ G+N+ T S ++ C LPSI +F Sbjct: 116 IEKECALQKNKIKVHLKIDIGMNRYGIKIDDALEIATYIQNSKFLELEGICSHLPSIENF 175
>A4GAT_MOUSE (Q67BJ4) Lactosylceramide 4-alpha-galactosyltransferase (EC| 2.4.1.228) (Alpha-1,4-galactosyltransferase) (UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase) (Alpha-1,4-N-acetylglucosaminyltransferase) (Alpha4Gal-T1) (Glo Length = 359 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Frame = +2 Query: 95 MCSQETSSNTSALSSIQVTCEGLPSIASF*ILKCLARPSNLESICFS-----WLCP--LQ 253 MCS E+++ S + V +GLP + A+P NL S W+ P LQ Sbjct: 101 MCSVESAARAHPESQVVVLMKGLPRDTT-------AQPRNLGISLLSCFPNVWIRPLDLQ 153 Query: 254 MLYPPATRPCWHQLFQFRVPPWGLSLFS 337 L+ W+ + R P+ L + S Sbjct: 154 ELFEDTPLAAWYSEARHRWEPYQLPVLS 181
>G6PT_HUMAN (P35575) Glucose-6-phosphatase (EC 3.1.3.9) (G6Pase) (G-6-Pase)| Length = 357 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 171 MEGSPSQVTWIDERAEVF-ELVSWLHILLTPFSTLLCTLQIVF 46 ++G + W E+A+ + E W+HI TPF++LL L +F Sbjct: 227 LKGLGVDLLWTLEKAQRWCEQPEWVHIDTTPFASLLKNLGTLF 269
>POLN_SMSV1 (P36286) Non-structural polyprotein [Contains: Unknown protein;| Helicase (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC Length = 1879 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -3 Query: 356 QVQQLSKKTKKGPKVELGTGTTDANMDEW 270 +V+ K KGP+ G TD DEW Sbjct: 1068 RVEAKGKNKNKGPRKNTGVALTDDEYDEW 1096
>MSK2_MEDSA (P51138) Glycogen synthase kinase-3 homolog MsK-2 (EC 2.7.11.1)| Length = 411 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Frame = +2 Query: 185 ILKCLARPSNLESICFSWLCP--LQMLYPPATRPCWHQLFQFRVPPWGLSLFS------- 337 I+K L P+ E C + P + +P WH++F+ R+PP + L S Sbjct: 287 IIKVLGTPTREEIKCMN---PNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSP 343 Query: 338 -LRAAALD 358 LR+ AL+ Sbjct: 344 NLRSTALE 351
>MUC_HUMAN (P01871) Ig mu chain C region| Length = 454 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +2 Query: 146 VTCEGLPSIASF*ILKCLARPSNLESICFSW 238 V+CE PS S + CLA+ +SI FSW Sbjct: 12 VSCENSPSDTSSVAVGCLAQDFLPDSITFSW 42
>TF2H2_MOUSE (Q9JIB4) TFIIH basal transcription factor complex p44 subunit| (Basic transcription factor 2 44 kDa subunit) (BTF2-p44) (General transcription factor IIH polypeptide 2) Length = 396 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +2 Query: 20 YLQQNCVSRKTICKVHSKVENGVNKMCSQETSSNTSALSSIQVTCEGLPSI 172 Y QN +S+ I SK + ++ TS ++ +TC G PS+ Sbjct: 95 YFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSL 145
>YPE6_NPVLD (P36870) Hypothetical 33.9 kDa protein in PE 3'region (ORF 6)| Length = 291 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 213 LLGLAKHFRI*NEAMEGSPSQVTW-IDERAEVFELVSWLHILLTPFST 73 +L KHF+I +E M ++ W +D A+ +++ LH L+ + T Sbjct: 147 VLAQNKHFKIWSEVMNAPAVEIDWRLDMEAQQTRVINLLHDLVYRWET 194
>KSG10_ARATH (Q39019) Shaggy-related protein kinase kappa (EC 2.7.11.1)| (ASK-kappa) (AtK-1) Length = 421 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Frame = +2 Query: 185 ILKCLARPSNLESICFSWLCP--LQMLYPPATRPCWHQLFQFRVPPWGLSLF-------- 334 I+K L P+ E C + P + +P WH++FQ R+PP + L Sbjct: 296 IIKVLGTPTREEIKCMN---PNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLLCRFFQYSP 352 Query: 335 SLRAAALD 358 +LR AL+ Sbjct: 353 NLRCTALE 360
>TF2H2_HUMAN (Q13888) TFIIH basal transcription factor complex p44 subunit| (Basic transcription factor 2 44 kDa subunit) (BTF2-p44) (General transcription factor IIH polypeptide 2) Length = 395 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +2 Query: 20 YLQQNCVSRKTICKVHSKVENGVNKMCSQETSSNTSALSSIQVTCEGLPSI 172 Y QN +S+ I SK + ++ TS ++ +TC G PS+ Sbjct: 95 YFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSL 145
>TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 616 Score = 27.3 bits (59), Expect = 9.2 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Frame = +3 Query: 57 VKYTARSKMVSTRCAAKRLVQTPPLSHLSKLLVKGYPPLPHSRS*NV*LGPATSNLFVFL 236 VKY R + T + L P S + ++ GY LP +++ + +GP T Sbjct: 420 VKYKTRLRKARTGLCTRWLSSLPLGSRVPVVIKPGYLTLPPAQAPLILIGPGTG------ 473 Query: 237 GFVLCKCCTLQPLVHVGISCSS---SEFHL 317 C L+ LV +S S+ SE HL Sbjct: 474 ------CAPLRSLVIDRLSNSTLARSEIHL 497
>MSK3_MEDSA (P51139) Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.11.1)| Length = 411 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Frame = +2 Query: 185 ILKCLARPSNLESICFSWLCP--LQMLYPPATRPCWHQLFQFRVPPWGLSLFS------- 337 I+K L P+ E C + P + +P WH++F R+PP + L S Sbjct: 287 IIKVLGTPTREEIKCMN---PNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSP 343 Query: 338 -LRAAALD 358 LR+ AL+ Sbjct: 344 NLRSTALE 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,675,833 Number of Sequences: 219361 Number of extensions: 1156600 Number of successful extensions: 3360 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3359 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
