ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479987.1| Oryza sativa (japonica cultivar-group), mRNA 218 1e-53
2ref|XM_507125.1| PREDICTED Oryza sativa (japonica cultivar-group... 218 1e-53
3dbj|AK101582.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4dbj|AK065561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
5gb|AY104978.1| Zea mays PCO093035 mRNA sequence 190 3e-45
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
7dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
8gb|AY729844.1| Mallomonas rasilis actin gene, partial cds 54 5e-04
9tpg|BK000424.1| TPA: TPA_exp: Arabidopsis thaliana actin-related... 46 0.12
10gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P... 46 0.12
11gb|AC154463.2| Mus musculus BAC clone RP24-144A20 from chromosom... 44 0.47
12gb|AF288226.1|AF288226 Setaria italica actin mRNA, complete cds 44 0.47
13emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in ... 42 1.9
14ref|XM_625012.1| PREDICTED: Apis mellifera similar to actin (LOC... 42 1.9
15gb|AF025457.2| Caenorhabditis elegans cosmid C08E3, complete seq... 40 7.3
16ref|XM_414415.1| PREDICTED: Gallus gallus similar to ataxin 7 (L... 40 7.3
17gb|BC074427.1| Xenopus laevis cDNA clone IMAGE:6944941, partial cds 40 7.3
18emb|AL499602.6| Human DNA sequence from clone RP11-158H18 on chr... 40 7.3
19emb|AL157696.27| Human DNA sequence from clone RP11-454P4 on chr... 40 7.3
20emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, B... 40 7.3
21gb|M87280.1|ERWCRTS Pantoea agglomerans pyrophosphate synthase (... 40 7.3
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
24dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
25dbj|AP000940.8| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.3
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
27emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 40 7.3
28dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 7.3 
>ref|XM_479987.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1759

 Score =  218 bits (110), Expect = 1e-53
 Identities = 160/177 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  atgctccaccatttcatgggcatttcctctggatataggaaacgccgtgctcttcgtact 399
            ||||||||| | |||||||||| ||||| ||||| ||||| || || || |||||||| |
Sbjct: 1459 atgctccacaacttcatgggcacttcctttggatgtaggatactccatgttcttcgtatt 1400

                                                                        
Query: 400  ctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccctncaa 459
            ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct: 1399 ctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccctccaa 1340

                                                                     
Query: 460  tccagacactgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
            |||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1339 tccaaacactgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 1283
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>ref|XM_507125.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1613_G04.21 mRNA
          Length = 1961

 Score =  218 bits (110), Expect = 1e-53
 Identities = 160/177 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  atgctccaccatttcatgggcatttcctctggatataggaaacgccgtgctcttcgtact 399
            ||||||||| | |||||||||| ||||| ||||| ||||| || || || |||||||| |
Sbjct: 1459 atgctccacaacttcatgggcacttcctttggatgtaggatactccatgttcttcgtatt 1400

                                                                        
Query: 400  ctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccctncaa 459
            ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct: 1399 ctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccctccaa 1340

                                                                     
Query: 460  tccagacactgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
            |||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1339 tccaaacactgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 1283
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>dbj|AK101582.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050O03, full
            insert sequence
          Length = 1760

 Score =  218 bits (110), Expect = 1e-53
 Identities = 160/177 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  atgctccaccatttcatgggcatttcctctggatataggaaacgccgtgctcttcgtact 399
            ||||||||| | |||||||||| ||||| ||||| ||||| || || || |||||||| |
Sbjct: 1459 atgctccacaacttcatgggcacttcctttggatgtaggatactccatgttcttcgtatt 1400

                                                                        
Query: 400  ctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccctncaa 459
            ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct: 1399 ctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccctccaa 1340

                                                                     
Query: 460  tccagacactgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
            |||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1339 tccaaacactgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 1283
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>dbj|AK065561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033I11, full
            insert sequence
          Length = 1961

 Score =  218 bits (110), Expect = 1e-53
 Identities = 160/177 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  atgctccaccatttcatgggcatttcctctggatataggaaacgccgtgctcttcgtact 399
            ||||||||| | |||||||||| ||||| ||||| ||||| || || || |||||||| |
Sbjct: 1459 atgctccacaacttcatgggcacttcctttggatgtaggatactccatgttcttcgtatt 1400

                                                                        
Query: 400  ctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccctncaa 459
            ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct: 1399 ctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccctccaa 1340

                                                                     
Query: 460  tccagacactgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
            |||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1339 tccaaacactgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 1283
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>gb|AY104978.1| Zea mays PCO093035 mRNA sequence
          Length = 1846

 Score =  190 bits (96), Expect = 3e-45
 Identities = 167/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 352  ttcatgggcatttcctctggatataggaaacgccgtgctcttcgtactctgctttggaga 411
            |||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct: 1482 ttcaagggcactttctctgaatataggaaaccccatgctcttcatactctgctttggaga 1423

                                                                        
Query: 412  accacatttgctggaacgacccaagggatgcaaggatgctccctncaatccagacactga 471
            ||||||| ||||||||||||||||| ||||| || ||||||||| ||||||| |||||||
Sbjct: 1422 accacatctgctggaacgacccaagagatgctagaatgctccctccaatccaaacactga 1363

                                                                        
Query: 472  atcgcctctctattgagtttccacttgccaaaaccttcacacgagcattttgagggcact 531
            | || ||||||| ||||||||| ||||||| |||||| |||||||||  ||||||  |||
Sbjct: 1362 aacgtctctctactgagtttccgcttgccataaccttgacacgagcagcttgaggagact 1303

                       
Query: 532  cctccagtact 542
            |||||| ||||
Sbjct: 1302 cctccaatact 1292
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 1e-23
 Identities = 71/75 (94%)
 Strand = Plus / Minus

                                                                           
Query: 396     tactctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccct 455
               ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 2086691 tactctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccct 2086632

                              
Query: 456     ncaatccagacactg 470
                ||||||| ||||||
Sbjct: 2086631 ccaatccaaacactg 2086617



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                
Query: 468     ctgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
               |||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 2086401 ctgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 2086353
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>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1613_G04
          Length = 135357

 Score =  119 bits (60), Expect = 1e-23
 Identities = 71/75 (94%)
 Strand = Plus / Minus

                                                                         
Query: 396   tactctgctttggagaaccacatttgctggaacgacccaagggatgcaaggatgctccct 455
             ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 80221 tactctgctttggagaaccacatttgctggaacgacccaagggatgctagaatgctccct 80162

                            
Query: 456   ncaatccagacactg 470
              ||||||| ||||||
Sbjct: 80161 ccaatccaaacactg 80147



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 468   ctgaatcgcctctctattgagtttccacttgccaaaaccttcacacgag 516
             |||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 79931 ctgaatcgcctctctactgaatttccacttgccaaaacctttacacgag 79883
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>gb|AY729844.1| Mallomonas rasilis actin gene, partial cds
          Length = 891

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 393 tcgtactctgctttggagaaccacatttgctggaa 427
           ||||||||||| ||||||| |||||||||||||||
Sbjct: 854 tcgtactctgccttggagatccacatttgctggaa 820
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>tpg|BK000424.1| TPA: TPA_exp: Arabidopsis thaliana actin-related protein 4a (ARP4a)
            gene, complete cds
          Length = 1980

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 405  ttggagaaccacatttgctggaa 427
            |||||||||||||||||||||||
Sbjct: 1151 ttggagaaccacatttgctggaa 1129
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>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete
             sequence
          Length = 108387

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 405   ttggagaaccacatttgctggaa 427
             |||||||||||||||||||||||
Sbjct: 82850 ttggagaaccacatttgctggaa 82872
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>gb|AC154463.2| Mus musculus BAC clone RP24-144A20 from chromosome 9, complete sequence
          Length = 147232

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 232   gcaatataaatatccccaggta 253
             ||||||||||||||||||||||
Sbjct: 24718 gcaatataaatatccccaggta 24739
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>gb|AF288226.1|AF288226 Setaria italica actin mRNA, complete cds
          Length = 1134

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 434  aagggatgcaaggatgctccctncaatccagacactg 470
            |||||| |||||||||  |||| ||||||||||||||
Sbjct: 1053 aagggaggcaaggatggaccctccaatccagacactg 1017
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>emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in linkage group 8, complete
              sequence
          Length = 213777

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tggctaaagaattcatttccg 79
              |||||||||||||||||||||
Sbjct: 107322 tggctaaagaattcatttccg 107342
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>ref|XM_625012.1| PREDICTED: Apis mellifera similar to actin (LOC552637), mRNA
          Length = 1131

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 393  tcgtactctgctttggagaaccacatttgctggaacg 429
            |||||||||  ||| |||| |||||||||||||||||
Sbjct: 1091 tcgtactcttgtttcgagatccacatttgctggaacg 1055
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>gb|AF025457.2| Caenorhabditis elegans cosmid C08E3, complete sequence
          Length = 31445

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 507  ttcacacgagcattttgagg 526
            ||||||||||||||||||||
Sbjct: 8039 ttcacacgagcattttgagg 8020
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>ref|XM_414415.1| PREDICTED: Gallus gallus similar to ataxin 7 (LOC416078), mRNA
          Length = 5810

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 278  cttcctgcatctaactgttgctca 301
            |||||||||||| |||||||||||
Sbjct: 2488 cttcctgcatctgactgttgctca 2511
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>gb|BC074427.1| Xenopus laevis cDNA clone IMAGE:6944941, partial cds
          Length = 2596

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 408  gagaaccacatttgctggaacgacccaaggga 439
            |||| ||||||||||||||||| ||| |||||
Sbjct: 1266 gagatccacatttgctggaacgtccccaggga 1235
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>emb|AL499602.6| Human DNA sequence from clone RP11-158H18 on chromosome 9 Contains a
             novel gene and two CpG islands, complete sequence
          Length = 175560

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   taactcagtcatgagagcaa 235
             ||||||||||||||||||||
Sbjct: 46821 taactcagtcatgagagcaa 46802
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>emb|AL157696.27| Human DNA sequence from clone RP11-454P4 on chromosome 13, complete
            sequence
          Length = 84231

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   cttcaagaaccagctgtgta 52
            ||||||||||||||||||||
Sbjct: 4131 cttcaagaaccagctgtgta 4112
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>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
          Length = 89517

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tctaccatcaatgacaagta 173
             ||||||||||||||||||||
Sbjct: 51877 tctaccatcaatgacaagta 51896
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>gb|M87280.1|ERWCRTS Pantoea agglomerans pyrophosphate synthase (crtE), zeaxanthin
            glucosyl transferase (crtX), and lycopene cyclase (crtY)
            genes, complete cds; phytoene dehydrogenase (crtI) gene,
            partial cds; phytoene synthase (crtB) and beta-carotene
            hydroxylase (crtZ) genes, complete cds; and unknown genes
          Length = 12753

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  ccaggtaacaaaggtggcga 266
            ||||||||||||||||||||
Sbjct: 3311 ccaggtaacaaaggtggcga 3330
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 132    acgagaaaaatcatcacatgtatctacc 159
              ||||||||||||| || |||||||||||
Sbjct: 272114 acgagaaaaatcaacatatgtatctacc 272141
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 341      tgctccaccatttcatgggc 360
                ||||||||||||||||||||
Sbjct: 19523407 tgctccaccatttcatgggc 19523388
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476H10
          Length = 151703

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    tgctccaccatttcatgggc 360
              ||||||||||||||||||||
Sbjct: 140934 tgctccaccatttcatgggc 140915
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>dbj|AP000940.8| Homo sapiens genomic DNA, chromosome 18 clone:RP11-855E1, complete
             sequence
          Length = 159082

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    gtgtacgtaaatggctaaagaatt 71
             ||||| ||||||||||||||||||
Sbjct: 65318 gtgtaagtaaatggctaaagaatt 65295
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 132    acgagaaaaatcatcacatgtatctacc 159
              ||||||||||||| || |||||||||||
Sbjct: 272114 acgagaaaaatcaacatatgtatctacc 272141
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 132   acgagaaaaatcatcacatgtatctacc 159
             ||||||||||||| || |||||||||||
Sbjct: 32879 acgagaaaaatcaacatatgtatctacc 32852
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>dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-870F11, complete
              sequences
          Length = 216975

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     gtgtacgtaaatggctaaagaatt 71
              ||||| ||||||||||||||||||
Sbjct: 214001 gtgtaagtaaatggctaaagaatt 213978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,331,183
Number of Sequences: 3902068
Number of extensions: 4331183
Number of successful extensions: 78085
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77948
Number of HSP's gapped (non-prelim): 137
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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