| Clone Name | rbags27d22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507568.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1119_D01.18 mRNA Length = 1206 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 692 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 633 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 632 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 573 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 572 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 513 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 512 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 453 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 452 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 403
>ref|XM_507127.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1119_D01.18 mRNA Length = 1200 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 685 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 626 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 625 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 566 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 565 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 506 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 505 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 446 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 445 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 396
>ref|XM_480008.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1200 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 685 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 626 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 625 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 566 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 565 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 506 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 505 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 446 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 445 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 396
>dbj|AK104727.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B10, full insert sequence Length = 1200 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 685 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 626 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 625 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 566 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 565 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 506 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 505 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 446 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 445 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 396
>dbj|AK099590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043H11, full insert sequence Length = 1206 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 692 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 633 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 632 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 573 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 572 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 513 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 512 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 453 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 452 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 403
>dbj|AK061429.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H03, full insert sequence Length = 1200 Score = 377 bits (190), Expect = e-101 Identities = 265/290 (91%) Strand = Plus / Minus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 685 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 626 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 625 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 566 Query: 465 atgtatttatcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacc 524 |||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 565 atgtatttatcacccccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacc 506 Query: 525 cacaggacaccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactgg 584 ||||| || || || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 505 cacagaacgccgggtaaacccttgaacttctctgatgtttcctcgtcgacagtgcactgg 446 Query: 585 aacccagtgtaagtggttgtgctgaaggcatacatgttcttcttggcttc 634 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 445 aaaccagtgtaggtggttgtgctgaaggcatacatgttcttcttggcttc 396
>ref|NM_101016.2| Arabidopsis thaliana unknown protein AT1G11430 mRNA, complete cds Length = 946 Score = 172 bits (87), Expect = 9e-40 Identities = 183/215 (85%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 613 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 554 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 553 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 494 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 493 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 434 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||||||||||||||| Sbjct: 433 tatgtcgtggtactgaatgcatacatgttcttctt 399
>emb|BX814887.1|CNS0ABHU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZC12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 910 Score = 172 bits (87), Expect = 9e-40 Identities = 183/215 (85%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 579 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 520 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 519 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 460 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 459 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 400 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||||||||||||||| Sbjct: 399 tatgtcgtggtactgaatgcatacatgttcttctt 365
>gb|BT005071.1| Arabidopsis thaliana clone U50263 putative DAG protein (At1g11430) mRNA, complete cds Length = 730 Score = 172 bits (87), Expect = 9e-40 Identities = 183/215 (85%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 590 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 531 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 530 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 471 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 470 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 411 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||||||||||||||| Sbjct: 410 tatgtcgtggtactgaatgcatacatgttcttctt 376
>gb|AY087455.1| Arabidopsis thaliana clone 35647 mRNA, complete sequence Length = 877 Score = 172 bits (87), Expect = 9e-40 Identities = 183/215 (85%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 613 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 554 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 553 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 494 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 493 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 434 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||||||||||||||| Sbjct: 433 tatgtcgtggtactgaatgcatacatgttcttctt 399
>dbj|AK117508.1| Arabidopsis thaliana At1g11430 mRNA for unknown protein, complete cds, clone: RAFL17-15-B11 Length = 860 Score = 172 bits (87), Expect = 9e-40 Identities = 183/215 (85%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 597 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 538 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 537 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 478 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 477 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 418 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||||||||||||||| Sbjct: 417 tatgtcgtggtactgaatgcatacatgttcttctt 383
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 2172406 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 2172465 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 2172466 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 2172525 Query: 465 atgtatttatcacct 479 ||||||||||||||| Sbjct: 2172526 atgtatttatcacct 2172540 Score = 153 bits (77), Expect = 8e-34 Identities = 89/93 (95%) Strand = Plus / Plus Query: 542 acccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtgtaagtggt 601 |||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 2172788 acccttgaacttctctgatgtttcctcgtcgacagtgcactggaaaccagtgtaggtggt 2172847 Query: 602 tgtgctgaaggcatacatgttcttcttggcttc 634 ||||||||||||||||||||||||||||||||| Sbjct: 2172848 tgtgctgaaggcatacatgttcttcttggcttc 2172880 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 480 ccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacag 529 |||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 2172634 ccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacccacag 2172683
>emb|BX814620.1|CNS0AC71 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 501 Score = 165 bits (83), Expect = 2e-37 Identities = 182/215 (84%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtattta 473 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct: 218 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgtacttg 159 Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 || ||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || Sbjct: 158 tcgcctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaact 99 Query: 534 ccaggcaaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtg 593 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct: 98 ccaggcaaacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagta 39 Query: 594 taagtggttgtgctgaaggcatacatgttcttctt 628 || || || || ||||| ||||| ||||||||||| Sbjct: 38 tatgtcgtggtactgaatgcataaatgttcttctt 4
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_D01 Length = 97862 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 345 ggtctcctgctggcaggggggccatctcttcgcctctcataccgtctgctttcatacttt 404 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 50668 ggtctcctgcttgctgggggtccatctcttcgcctttcataccgtctgctttcatatttg 50727 Query: 405 gaggtcctccgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccattt 464 || ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 50728 gatgtcctccgctcttttggttggtaggttgggtaagtgcatggaattatctctccgttt 50787 Query: 465 atgtatttatcacct 479 ||||||||||||||| Sbjct: 50788 atgtatttatcacct 50802 Score = 153 bits (77), Expect = 8e-34 Identities = 89/93 (95%) Strand = Plus / Plus Query: 542 acccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtgtaagtggt 601 |||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 51050 acccttgaacttctctgatgtttcctcgtcgacagtgcactggaaaccagtgtaggtggt 51109 Query: 602 tgtgctgaaggcatacatgttcttcttggcttc 634 ||||||||||||||||||||||||||||||||| Sbjct: 51110 tgtgctgaaggcatacatgttcttcttggcttc 51142 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 480 ccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacag 529 |||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 50896 ccgtagtctttgttcttgacatcgatgtaggaatcaggaagcacccacag 50945
>emb|X95753.1|AMDAGGENE A.majus mRNA for DAG protein Length = 1002 Score = 103 bits (52), Expect = 7e-19 Identities = 175/216 (81%) Strand = Plus / Minus Query: 419 ctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgtatttatcacc 478 ||||||||| || ||||||||| |||||||| ||||| ||||| | ||| |||||||| Sbjct: 601 ctttggttgataagttgggtattgacacggaattatctctccattgacgtacttatcacc 542 Query: 479 tccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggacaccagg 538 ||| || |||||||| || ||||| || || ||||| || | |||||| | || || || Sbjct: 541 tccataatctttgttcttaacatctatatatgaatctggcaacacccataatacgcctgg 482 Query: 539 caaacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtgtaagt 598 | |||||| ||||||||||||||||||||| ||||| || || ||||||||||| || Sbjct: 481 gagacccttaaacttctctgatgtttcttcagttacagtacattgaaacccagtgtatgt 422 Query: 599 ggttgtgctgaaggcatacatgttcttcttggcttc 634 || || ||||| |||||||| |||||||| ||||| Sbjct: 421 agtagtactgaatgcatacatattcttcttcgcttc 386
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence Length = 84797 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 541 aacccttgaacttctctgatgtttcttcatcgacagtgcactggaacccagtgtaagtgg 600 |||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| || || | Sbjct: 33095 aacccttgaacttctcagatgtttcttcgtcgatggtgcattggaatccagtatatgtcg 33036 Query: 601 ttgtgctgaaggcatacatgttcttctt 628 | || ||||| ||||||||||||||||| Sbjct: 33035 tggtactgaatgcatacatgttcttctt 33008 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 414 cgctcctttggttggtaggttgggtatgtgcacggaatgatctcaccatttatgta 469 |||| |||||||||||| ||||||||||||||||| || ||||| ||||| ||||| Sbjct: 33413 cgctgctttggttggtatgttgggtatgtgcacgggataatctctccattgatgta 33358 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Minus Query: 476 acctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggacacc 535 |||||| ||||||||||| || ||||| |||||||| ||||| | ||||| || || || Sbjct: 33257 acctccatagtctttgttcttgacatctatgtaggagtcaggcaagacccagagaactcc 33198 Query: 536 aggcaaacc 544 ||||||||| Sbjct: 33197 aggcaaacc 33189
>ref|NM_202514.1| Arabidopsis thaliana unknown protein AT3G06790 transcript variant AT3G06790.2 mRNA, complete cds Length = 1844 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 ||||||||||||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct: 581 tcacctccgtagtctttgtttggtacatcgagataggaatccggcagcacccagagaaca 522 Query: 534 ccaggcaa 541 |||||||| Sbjct: 521 ccaggcaa 514
>ref|NM_111559.2| Arabidopsis thaliana unknown protein AT3G06790 transcript variant AT3G06790.1 mRNA, complete cds Length = 1844 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 ||||||||||||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct: 581 tcacctccgtagtctttgtttggtacatcgagataggaatccggcagcacccagagaaca 522 Query: 534 ccaggcaa 541 |||||||| Sbjct: 521 ccaggcaa 514
>gb|BT004451.1| Arabidopsis thaliana clone U20451 putative DAG protein (At3g06790) mRNA, complete cds Length = 766 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 ||||||||||||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct: 548 tcacctccgtagtctttgtttggtacatcgagataggaatccggcagcacccagagaaca 489 Query: 534 ccaggcaa 541 |||||||| Sbjct: 488 ccaggcaa 481
>gb|BT002982.1| Arabidopsis thaliana clone RAFL15-15-B14 (R20451) putative DAG protein (At3g06790) mRNA, complete cds Length = 971 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggaca 533 ||||||||||||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct: 581 tcacctccgtagtctttgtttggtacatcgagataggaatccggcagcacccagagaaca 522 Query: 534 ccaggcaa 541 |||||||| Sbjct: 521 ccaggcaa 514
>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence, complete sequence Length = 63767 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 475 cacctccgtagtctttgttttttacatcgatgtaggaatcagggagcacccacaggacac 534 |||||||||||||||||||| |||||||| |||||||| || |||||||| || |||| Sbjct: 21594 cacctccgtagtctttgtttggtacatcgagataggaatccggcagcacccagagaacac 21535 Query: 535 caggcaa 541 ||||||| Sbjct: 21534 caggcaa 21528
>gb|AY108928.1| Zea mays PCO124033 mRNA sequence Length = 592 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 366 ccatctcttcgcctctcataccgtctgctttcatactttgaggtcctccgctcctttggt 425 |||||||| |||||||| ||||| ||||| || ||||| || |||||||||||||| || Sbjct: 248 ccatctctccgcctctcgtaccgcctgctctcgtacttggacgtcctccgctccttcggc 189 Query: 426 tggtaggttgggtatgtgca 445 ||||| || ||||| ||||| Sbjct: 188 tggtacgtcgggtacgtgca 169 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 474 tcacctccgtagtctttgttttttacatcgatgtaggaatcagg 517 |||||||||||||| ||||| || || ||||||||||||||||| Sbjct: 51 tcacctccgtagtccttgttcttcacgtcgatgtaggaatcagg 8
>gb|BT019231.1| Zea mays clone Contig904.F mRNA sequence Length = 762 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 502 cgatgtaggaatcagggagcacccacaggacaccaggcaaacccttgaacttctc 556 |||||||||||||||||||||||| | | || || || | ||||||||||||||| Sbjct: 662 cgatgtaggaatcagggagcaccccccgcacccccgggagacccttgaacttctc 716
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 537 ggcaaacccttgaacttctctg 558 |||||||||||||||||||||| Sbjct: 132635 ggcaaacccttgaacttctctg 132614
>gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosome 13, complete sequence Length = 145213 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tcctgctggcaggggggccat 369 ||||||||||||||||||||| Sbjct: 97636 tcctgctggcaggggggccat 97616
>gb|AC134322.25| Medicago truncatula clone mth2-17i21, complete sequence Length = 136954 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 588 ccagtgtaagtggttgtgctgaaggcatacatgttcttctt 628 ||||||||||||||||| ||| | ||||| || |||||||| Sbjct: 94751 ccagtgtaagtggttgtactgcaagcataaatcttcttctt 94711
>gb|AF477157.1| HIV-1 isolate SM25c from Australia envelope glycoprotein (env) gene, partial cds Length = 525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 aacattacagaaaatatcaca 57 ||||||||||||||||||||| Sbjct: 451 aacattacagaaaatatcaca 471
>gb|AC016723.11| Homo sapiens BAC clone RP11-334N15 from 2, complete sequence Length = 202001 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 544 ccttgaacttctctgatgttt 564 ||||||||||||||||||||| Sbjct: 26935 ccttgaacttctctgatgttt 26915
>emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on chromosome 4, complete sequence Length = 223059 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 catcatatcttgggctctgga 210 ||||||||||||||||||||| Sbjct: 191170 catcatatcttgggctctgga 191150
>emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chromosome 13, complete sequence Length = 229171 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 tcctgctggcaggggggccat 369 ||||||||||||||||||||| Sbjct: 67298 tcctgctggcaggggggccat 67318
>gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complete sequence Length = 195922 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 ccatttatgtatttatcacct 479 ||||||||||||||||||||| Sbjct: 56017 ccatttatgtatttatcacct 56037
>gb|BC032159.1| Mus musculus scavenger receptor class A, member 5 (putative), mRNA (cDNA clone MGC:38582 IMAGE:5354657), complete cds Length = 3779 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 2416 gtgctacatcatatcttggg 2435
>gb|BC023907.1| Mus musculus scavenger receptor class A, member 5 (putative), mRNA (cDNA clone MGC:38173 IMAGE:5321978), complete cds Length = 3724 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 2376 gtgctacatcatatcttggg 2395
>gb|BC016096.1| Mus musculus scavenger receptor class A, member 5 (putative), mRNA (cDNA clone MGC:27633 IMAGE:4506472), complete cds Length = 3785 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 2436 gtgctacatcatatcttggg 2455
>gb|BC026758.1| Mus musculus scavenger receptor class A, member 5 (putative), mRNA (cDNA clone IMAGE:4011932), partial cds Length = 2839 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 1484 gtgctacatcatatcttggg 1503
>gb|U41036.1| Caenorhabditis elegans cosmid T14E8, complete sequence Length = 37245 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 36 aaacattacagaaaatatcacaagatac 63 |||||||||| |||||||||||| |||| Sbjct: 26788 aaacattacaaaaaatatcacaatatac 26761
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 3549 gtgctacatcatatcttggg 3530
>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence Length = 195696 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 164079 gtgctacatcatatcttggg 164060
>gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, complete sequence Length = 163882 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ttggttggtaggttgggtat 440 |||||||||||||||||||| Sbjct: 13374 ttggttggtaggttgggtat 13355
>gb|AC158778.4| Mus musculus chromosome 19, clone RP24-90P13, complete sequence Length = 167819 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 ttggttggtaggttgggtat 440 |||||||||||||||||||| Sbjct: 90820 ttggttggtaggttgggtat 90839
>emb|AL591885.11| Human DNA sequence from clone RP11-655L13 on chromosome 1 Contains the 5' end of a novel gene (LOC339529) and a CpG island, complete sequence Length = 128312 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 586 acccagtgtaagtggttgtgctga 609 ||||||||||||| |||||||||| Sbjct: 63823 acccagtgtaagttgttgtgctga 63846
>emb|AL358176.22| Human DNA sequence from clone RP11-467I20 on chromosome 1 Contains the gene for protein related to DAN and cerberus (FLJ21195), two novel genes, a pseudogene similar to part of cytochrome c oxidase I (MTCOI1), a ribosomal protein S11 (RPS11) pseudogene, a ferredoxin pseudogene and a CpG island, complete sequence Length = 184311 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ttctctgatgtttcttcatc 571 |||||||||||||||||||| Sbjct: 8136 ttctctgatgtttcttcatc 8155
>emb|AL355587.14| Human DNA sequence from clone RP11-561H23 on chromosome 10 Contains the 3' end of a novel gene (KIAA1136) (FLJ37801) and a CpG island, complete sequence Length = 130039 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 acagaaaatatcacaagata 62 |||||||||||||||||||| Sbjct: 65652 acagaaaatatcacaagata 65633
>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete sequence Length = 226730 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 agttattctcatggttcaaa 149 |||||||||||||||||||| Sbjct: 201970 agttattctcatggttcaaa 201951
>dbj|AK133176.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4931418E21 product:hypothetical protein, full insert sequence Length = 3795 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 2461 gtgctacatcatatcttggg 2480
>dbj|AK084591.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330018F04 product:unclassifiable, full insert sequence Length = 2284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 287 gtgctacatcatatcttggg 306
>gb|AC148708.1| Macaca mulatta Major Histocompatibility Complex BAC MMU387P10, complete sequence Length = 176807 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ttcatcgacagtgcactgga 585 |||||||||||||||||||| Sbjct: 113898 ttcatcgacagtgcactgga 113879
>gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex BAC MMU065H09, complete sequence Length = 177726 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ttcatcgacagtgcactgga 585 |||||||||||||||||||| Sbjct: 99000 ttcatcgacagtgcactgga 98981
>gb|AC148668.1| Macaca mulatta Major Histocompatibility Complex BAC MMU038L02, complete sequence Length = 168263 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ttcatcgacagtgcactgga 585 |||||||||||||||||||| Sbjct: 10416 ttcatcgacagtgcactgga 10397
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tccactcaagttattctcat 141 |||||||||||||||||||| Sbjct: 22557141 tccactcaagttattctcat 22557122
>gb|AF242295.1|AF242295 Bacillus firmus surface layer protein (slpA) gene, complete cds Length = 4000 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ttctctgatgtttcttcatc 571 |||||||||||||||||||| Sbjct: 876 ttctctgatgtttcttcatc 895
>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0035K09 Length = 124866 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tccactcaagttattctcat 141 |||||||||||||||||||| Sbjct: 41093 tccactcaagttattctcat 41074
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tccactcaagttattctcat 141 |||||||||||||||||||| Sbjct: 22550 tccactcaagttattctcat 22531
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gtctttgttttttacatcga 504 |||||||||||||||||||| Sbjct: 4547777 gtctttgttttttacatcga 4547758
>ref|NM_028903.1| Mus musculus scavenger receptor class A, member 5 (putative) (Scara5), mRNA Length = 3785 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gtgctacatcatatcttggg 203 |||||||||||||||||||| Sbjct: 2436 gtgctacatcatatcttggg 2455
>emb|AL355052.3|CNS05TC4 Human chromosome 14 DNA sequence BAC R-1070A8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179712 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 accatttatgtatttatcac 477 |||||||||||||||||||| Sbjct: 147089 accatttatgtatttatcac 147070
>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence Length = 174174 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 catatcttgggctctggatg 212 |||||||||||||||||||| Sbjct: 120150 catatcttgggctctggatg 120131
>emb|BX000460.5| Zebrafish DNA sequence from clone CH211-15E22 in linkage group 1, complete sequence Length = 173084 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 cttgaacttctctgatgttt 564 |||||||||||||||||||| Sbjct: 76089 cttgaacttctctgatgttt 76070
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 attgagcagtctgttgtttc 286 |||||||||||||||||||| Sbjct: 223279 attgagcagtctgttgtttc 223260
>emb|AL117191.6|CNS01DRG Human chromosome 14 DNA sequence BAC C-2303G14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155307 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 accatttatgtatttatcac 477 |||||||||||||||||||| Sbjct: 143359 accatttatgtatttatcac 143378 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,048,110 Number of Sequences: 3902068 Number of extensions: 6048110 Number of successful extensions: 122452 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122269 Number of HSP's gapped (non-prelim): 181 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)