| Clone Name | rbags27d21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 573 bits (289), Expect = e-160 Identities = 432/475 (90%), Gaps = 5/475 (1%) Strand = Plus / Plus Query: 5 gagaaattctaacgagnattcggacttgctcagttgcagggatggctagcagatggggca 64 ||||||||||||||| ||||||||||||| || ||||| | ||||||||||||| || Sbjct: 37 gagaaattctaacga-aattcggacttgcttggtggcaggactagctagcagatgggaca 95 Query: 65 gagcgcgcaaagtgtcgaaggtacatggagaaatcaaggggaacgc--tac-acatttca 121 |||||| |||| |||| ||||||||||||||||| ||||| || | ||| || ||||| Sbjct: 96 gagcgcacaaactgtcaaaggtacatggagaaattaagggaaatacagtactacgtttca 155 Query: 122 agagctgctccgaatttctttagccctagccccacgctccatggcttagaatatgcctga 181 || | |||||| |||||||| |||||| |||||||| ||| |||||||||||||| || Sbjct: 156 agtgttgctccaaatttctt-agccctcgccccacgttccgctgcttagaatatgccgga 214 Query: 182 gagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatggacgacgtggtc 241 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 215 gagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatgaacgacgtggtc 274 Query: 242 ggagtgcccgttgtcccctgtcagcgcgacggctgctccggcgatcgcccctgctatcgc 301 |||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| Sbjct: 275 ggagtgcccgttgtccccggtcagggcgactgccgctccggcgatcgcccctgctatcgc 334 Query: 302 gctgttcttccagtcatggtgccctctggcctctctcaggccgtacgttatcccggagta 361 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 335 gctgttcttccagtcatggtgtcctctggcctctctcaggccgtacgttatcccagagta 394 Query: 362 caccccggctgccaatccccactggatggcctccttgcctgccgatttaaccactgcatc 421 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 395 gactccggctgccaatccccactggatggcctccttgcttgccgatttaaccactgaatc 454 Query: 422 gagcgacttctggccgtcatcccctctggcgctcgagaagttgctcctcttggcg 476 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 455 gagcgacttctggccgtcatcccctctggcgctcgagaaatggctcctcttggcg 509
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 337 bits (170), Expect = 2e-89 Identities = 275/310 (88%) Strand = Plus / Minus Query: 167 ttagaatatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaa 226 |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 595 ttagaatatgccggaaagcatggtcgccgcgcttgacagtgcggctccggtgatggcgaa 536 Query: 227 atggacgacgtggtcggagtgcccgttgtcccctgtcagcgcgacggctgctccggcgat 286 |||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| | Sbjct: 535 atggacgacgtggtcggaatgcccgttgtccccggtcagggcgaccgcggctccggctag 476 Query: 287 cgcccctgctatcgcgctgttcttccagtcatggtgccctctggcctctctcaggccgta 346 || || || || ||||||||||||||||||||| |||||||||||| ||||| ||||| Sbjct: 475 tgcaccagcgattgcgctgttcttccagtcatggcaccctctggcctccctcagaccgta 416 Query: 347 cgttatcccggagtacaccccggctgccaatccccactggatggcctccttgcctgccga 406 || | ||||||||||| |||||||| || |||||||||| |||||||||||| ||||| Sbjct: 415 ggtcaatccggagtacactccggctgctaacccccactggaaggcctccttgccggccga 356 Query: 407 tttaaccactgcatcgagcgacttctggccgtcatcccctctggcgctcgagaagttgct 466 ||| |||||| | |||| |||||||||||| ||||||||||||||||||||||| | ||| Sbjct: 355 tttgaccactacttcgaacgacttctggccatcatcccctctggcgctcgagaaatggct 296 Query: 467 cctcttggcg 476 |||||||||| Sbjct: 295 cctcttggcg 286
>ref|NM_189221.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 792 Score = 224 bits (113), Expect = 2e-55 Identities = 236/277 (85%) Strand = Plus / Minus Query: 172 atatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatgga 231 ||||||| ||||||| | ||||||| || || || ||||| ||||||||||||||||||| Sbjct: 787 atatgccggagagcaggctcgccgcactggaaagcgcggcgccggtgatggcgaaatgga 728 Query: 232 cgacgtggtcggagtgcccgttgtcccctgtcagcgcgacggctgctccggcgatcgccc 291 | | |||||||| || |||| ||||||| |||||||| || || | || |||||||| | Sbjct: 727 ccatgtggtcggcgttcccggtgtcccccgtcagcgccaccgccacgccagcgatcgcgc 668 Query: 292 ctgctatcgcgctgttcttccagtcatggtgccctctggcctctctcaggccgtacgtta 351 | || | ||| |||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct: 667 cggcgaccgcactgttcttccagtcatggcaccctctggcctctctcaggccgtacgtca 608 Query: 352 tcccggagtacaccccggctgccaatccccactggatggcctccttgcctgccgatttaa 411 || |||||||||||||| |||||||||||||||| |||||||| || || ||||| | Sbjct: 607 gtccagagtacaccccggccgccaatccccactggaaagcctccttcccagcggatttta 548 Query: 412 ccactgcatcgagcgacttctggccgtcatcccctct 448 |||| ||||| |||||||||||||| ||||||||||| Sbjct: 547 ccacggcatcaagcgacttctggccatcatcccctct 511
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 123 bits (62), Expect = 6e-25 Identities = 229/284 (80%), Gaps = 3/284 (1%) Strand = Plus / Minus Query: 169 agaatatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaat 228 |||||||||| ||||||| | || | ||||| || || ||||| |||||||||||||| | Sbjct: 626 agaatatgccggagagcaagctcccggcgctggagagcgcggcgccggtgatggcgaagt 567 Query: 229 ggacgacgtggtcggagtgcccgttg---tcccctgtcagcgcgacggctgctccggcga 285 ||||| | ||||||||| ||| | || || || ||||| || || || || |||| Sbjct: 566 tgacgagcttgtcggagtggccgccggcgtcacccgtgagcgccaccgccgccccagcga 507 Query: 286 tcgcccctgctatcgcgctgttcttccagtcatggtgccctctggcctctctcaggccgt 345 | || ||||| || ||||||||||||||||| ||| || |||||||| | ||| ||| Sbjct: 506 tggcgcctgcgatggcgctgttcttccagtcgtggcatcccctggcctcccgcagcgcgt 447 Query: 346 acgttatcccggagtacaccccggctgccaatccccactggatggcctccttgcctgccg 405 |||| | ||| ||||| || ||||||||||| |||||||||| |||||||||||| |||| Sbjct: 446 acgtgagccctgagtagactccggctgccaacccccactggaaggcctccttgccggccg 387 Query: 406 atttaaccactgcatcgagcgacttctggccgtcatcccctctg 449 ||| |||||||| ||||||||| |||||||||| || |||||| Sbjct: 386 tttttaccactgcgtcgagcgacctctggccgtcgtcacctctg 343
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 87.7 bits (44), Expect = 3e-14 Identities = 222/284 (78%), Gaps = 3/284 (1%) Strand = Plus / Plus Query: 169 agaatatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaat 228 |||||||||| ||||||| | || | ||||| || || ||||| |||||||||||||| | Sbjct: 192 agaatatgccggagagcaagctcccggcgctggagagcgcggcgccggtgatggcgaagt 251 Query: 229 ggacgacgtggtcggagtgcccgttg---tcccctgtcagcgcgacggctgctccggcga 285 ||||| | ||||||||| ||| | || || || ||||| || || || || |||| Sbjct: 252 tgacgagcttgtcggagtggccgccggcgtcacccgtgagcgctaccgccgccccagcga 311 Query: 286 tcgcccctgctatcgcgctgttcttccagtcatggtgccctctggcctctctcaggccgt 345 | || ||||| || ||||||||||||||||| ||| || |||||||| | ||| ||| Sbjct: 312 tggcgcctgcgatggcgctgttcttccagtcgtggcatcccctggcctcccgcagcgcgt 371 Query: 346 acgttatcccggagtacaccccggctgccaatccccactggatggcctccttgcctgccg 405 |||| | ||| ||||| || ||||||||||| |||||| |||||||||||| |||| Sbjct: 372 acgtgagccctgagtagactccggctgccaannnnnactggaaggcctccttgccggccg 431 Query: 406 atttaaccactgcatcgagcgacttctggccgtcatcccctctg 449 |||||||| ||||||||| |||||||||| || |||||| Sbjct: 432 nnnnnaccactgcgtcgagcgacctctggccgtcgtcacctctg 475
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 311 ccagtcatggtgccctctggcctctctcaggccgtacgttatcccggagtacaccccggc 370 |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 11220430 ccagtcatggcaccctctggcctctctcaggccgtacgtcagtccagagtacaccccggc 11220489 Query: 371 tgccaatcc 379 |||||||| Sbjct: 11220490 cgccaatcc 11220498 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 172 atatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatgga 231 ||||||| ||||||| | ||||||| || || || ||||| ||||||||||||||||||| Sbjct: 11220184 atatgccggagagcaggctcgccgcactggaaagcgcggcgccggtgatggcgaaatgga 11220243 Query: 232 cgacgtggtcggagtgcccgttgtcccctgtcagcgc 268 | | |||||||| || |||| ||||||| |||||||| Sbjct: 11220244 ccatgtggtcggcgttcccggtgtcccccgtcagcgc 11220280 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 411 accactgcatcgagcgacttctggccgtcatcccct 446 ||||| ||||| |||||||||||||| ||||||||| Sbjct: 11220733 accacggcatcaagcgacttctggccatcatcccct 11220768
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146F03 Length = 137047 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 311 ccagtcatggtgccctctggcctctctcaggccgtacgttatcccggagtacaccccggc 370 |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 112223 ccagtcatggcaccctctggcctctctcaggccgtacgtcagtccagagtacaccccggc 112282 Query: 371 tgccaatcc 379 |||||||| Sbjct: 112283 cgccaatcc 112291 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 172 atatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatgga 231 ||||||| ||||||| | ||||||| || || || ||||| ||||||||||||||||||| Sbjct: 111977 atatgccggagagcaggctcgccgcactggaaagcgcggcgccggtgatggcgaaatgga 112036 Query: 232 cgacgtggtcggagtgcccgttgtcccctgtcagcgc 268 | | |||||||| || |||| ||||||| |||||||| Sbjct: 112037 ccatgtggtcggcgttcccggtgtcccccgtcagcgc 112073 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 411 accactgcatcgagcgacttctggccgtcatcccct 446 ||||| ||||| |||||||||||||| ||||||||| Sbjct: 112526 accacggcatcaagcgacttctggccatcatcccct 112561
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 311 ccagtcatggtgccctctggcctctctcaggccgtacgttatcccggagtacaccccggc 370 |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||| Sbjct: 7835 ccagtcatggcaccctctggcctctctcaggccgtacgtcagtccagagtacaccccggc 7894 Query: 371 tgccaatcc 379 |||||||| Sbjct: 7895 cgccaatcc 7903 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 172 atatgcctgagagcatggtcgccgcgctcgacagtgcggctccggtgatggcgaaatgga 231 ||||||| ||||||| | ||||||| || || || ||||| ||||||||||||||||||| Sbjct: 7589 atatgccggagagcaggctcgccgcactggaaagcgcggcgccggtgatggcgaaatgga 7648 Query: 232 cgacgtggtcggagtgcccgttgtcccctgtcagcgc 268 | | |||||||| || |||| ||||||| |||||||| Sbjct: 7649 ccatgtggtcggcgttcccggtgtcccccgtcagcgc 7685 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 411 accactgcatcgagcgacttctggccgtcatcccct 446 ||||| ||||| |||||||||||||| ||||||||| Sbjct: 8138 accacggcatcaagcgacttctggccatcatcccct 8173
>gb|AC144384.4| Pan troglodytes BAC clone CH251-456K17 from X, complete sequence Length = 220712 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 ggtgccctctggcctctctcaggcc 343 ||||||||| ||||||||||||||| Sbjct: 122590 ggtgccctcaggcctctctcaggcc 122566
>gb|AC145689.4| Pan troglodytes BAC clone CH251-184I22 from X, complete sequence Length = 181915 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 ggtgccctctggcctctctcaggcc 343 ||||||||| ||||||||||||||| Sbjct: 75851 ggtgccctcaggcctctctcaggcc 75875
>ref|NG_002382.2| Homo sapiens melanoma antigen pseudogene, family A (psMAGEA) on chromosome X Length = 5314 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 ggtgccctctggcctctctcaggcc 343 ||||||||| ||||||||||||||| Sbjct: 1324 ggtgccctcgggcctctctcaggcc 1300
>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 324604 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 ggtgccctctggcctctctcaggcc 343 ||||||||| ||||||||||||||| Sbjct: 76952 ggtgccctcgggcctctctcaggcc 76976
>gb|AF002997.4| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 245179 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 ggtgccctctggcctctctcaggcc 343 ||||||||| ||||||||||||||| Sbjct: 143202 ggtgccctcgggcctctctcaggcc 143178
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tagccctagccccacgctcc 161 |||||||||||||||||||| Sbjct: 58154 tagccctagccccacgctcc 58173
>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence Length = 232416 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tttctttagccctagcccca 155 |||||||||||||||||||| Sbjct: 17827 tttctttagccctagcccca 17846
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence Length = 208416 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tttctttagccctagcccca 155 |||||||||||||||||||| Sbjct: 164111 tttctttagccctagcccca 164130
>emb|AL442123.12| Human DNA sequence from clone RP11-175O19 on chromosome 10 Contains the 3' end of the MLR2 gene for a novel protein (likely ortholog of mouse transcription factor MLR2), the gene for a novel protein novel protein (DKFZP564P1916)(FLJ13022), the 3' end of the SLIT1 gene for slit homolog 1 (Drosophila) and a CpG island, complete sequence Length = 96660 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ggctagcagatggggcagag 67 |||||||||||||||||||| Sbjct: 69332 ggctagcagatggggcagag 69351
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ggacgacgtggtcggagtgcccgt 252 |||||| ||||||||||||||||| Sbjct: 57274 ggacgaggtggtcggagtgcccgt 57251
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ggacgacgtggtcggagtgcccgt 252 |||||| ||||||||||||||||| Sbjct: 63897 ggacgaggtggtcggagtgcccgt 63874
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ctctggcctctctcaggccg 344 |||||||||||||||||||| Sbjct: 3009064 ctctggcctctctcaggccg 3009083
>emb|BX548047.12| Zebrafish DNA sequence from clone CH211-77G15 in linkage group 2, complete sequence Length = 179092 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 agatggggcagagcgcgcaaagtg 78 |||||||||||| ||||||||||| Sbjct: 158865 agatggggcagaccgcgcaaagtg 158888
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tagccctagccccacgctcc 161 |||||||||||||||||||| Sbjct: 20059829 tagccctagccccacgctcc 20059848
>ref|XM_230571.3| PREDICTED: Rattus norvegicus similar to Adapter-related protein complex 4 epsilon 1 subunit (Epsilon subunit of AP-4) (AP-4 adapter complex epsilon subunit) (LOC311404), mRNA Length = 3402 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tgctcctcttggcgctggtg 482 |||||||||||||||||||| Sbjct: 1955 tgctcctcttggcgctggtg 1936
>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195835 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gatggctagcagatggggca 64 |||||||||||||||||||| Sbjct: 27474 gatggctagcagatggggca 27493 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,997,463 Number of Sequences: 3902068 Number of extensions: 2997463 Number of successful extensions: 50217 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50089 Number of HSP's gapped (non-prelim): 126 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)