Clone Information

BLAST Search Result

Clone Name	rbags26o18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL9_ORYSA (P49210) 60S ribosomal protein L9	62	3e-10
2	RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated...	57	8e-09
3	RL9_ARATH (P49209) 60S ribosomal protein L9	56	2e-08
4	RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A	48	7e-06
5	RL9B_SCHPO (O74905) 60S ribosomal protein L9-B	48	7e-06
6	RL9_RAT (P17077) 60S ribosomal protein L9	47	1e-05
7	RL9_MOUSE (P51410) 60S ribosomal protein L9	47	1e-05
8	RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9	47	1e-05
9	RL9_ICTPU (Q90YW0) 60S ribosomal protein L9	47	1e-05
10	RL9_HUMAN (P32969) 60S ribosomal protein L9	47	1e-05
11	RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9	47	1e-05
12	RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)	47	1e-05
13	RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)	46	2e-05
14	RL9_SPOFR (Q963B7) 60S ribosomal protein L9	42	3e-04
15	RL9_DROME (P50882) 60S ribosomal protein L9	42	4e-04
16	RL9_CAEEL (Q95Y90) 60S ribosomal protein L9	39	0.002
17	DNAJ1_CORGL (Q8NNB4) Chaperone protein dnaJ 1	33	0.22
18	RL6_AERPE (Q9YF91) 50S ribosomal protein L6P	30	1.4
19	SETBP_HUMAN (Q9Y6X0) SET-binding protein (SEB)	30	1.9
20	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	29	2.4
21	DPOE_CANGA (Q6FNY7) DNA polymerase epsilon, catalytic subunit A ...	29	2.4
22	THSB_ARCFU (O28821) Thermosome subunit beta (Thermosome subunit ...	29	3.2
23	THSA_ARCFU (O28045) Thermosome subunit alpha (Thermosome subunit...	29	3.2
24	PTPX_CANAL (P43078) Probable tyrosine-protein phosphatase (EC 3....	29	3.2
25	ELO3_CAEEL (P49191) Putative fatty acid elongation protein 3	28	4.2
26	MLO2_ARATH (Q9SXB6) MLO-like protein 2 (AtMlo2)	28	7.1
27	AGO2_DROME (Q9VUQ5) Argonaute 2 protein	28	7.1
28	H6ST2_BRARE (Q800H9) Heparan-sulfate 6-O-sulfotransferase 2 (EC ...	28	7.1
29	CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precurs...	28	7.1
30	CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precur...	28	7.1
31	THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit...	28	7.1
32	THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit...	28	7.1
33	RL6_HALMA (P14135) 50S ribosomal protein L6P (Hmal6) (Hl10)	28	7.1
34	THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit...	28	7.1
35	THSB_SULSO (Q9V2T8) Thermosome subunit beta (Thermosome subunit ...	27	9.3
36	EME1_CANGA (Q6FM02) Crossover junction endonuclease EME1 (EC 3.1...	27	9.3
37	THS_DESSY (Q53546) Thermosome subunit (Hyperthermophilic heat sh...	27	9.3
38	THSB_THEK8 (O24732) Thermosome subunit beta (Thermosome subunit ...	27	9.3
39	THS_PYRAB (Q9V2Q7) Thermosome subunit (Chaperonin subunit)	27	9.3
40	THSB_THEK1 (O24730) Thermosome subunit beta (Thermosome subunit ...	27	9.3
41	THSB_PYRKO (Q52500) Thermosome subunit beta (Thermosome subunit ...	27	9.3
42	PALF_DEBHA (Q6BY20) pH-response regulator protein palF/RIM8	27	9.3
43	RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)	27	9.3
44	THS_PYRHO (O57762) Thermosome subunit (Chaperonin subunit)	27	9.3

>RL9_ORYSA (P49210) 60S ribosomal protein L9|
          Length = 190

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKEE 276
           LINQKCHVKNKDIRKFLDGIYVSDKG I E+
Sbjct: 159 LINQKCHVKNKDIRKFLDGIYVSDKGTITED 189

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>RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated protein|
           GA)
          Length = 193

 Score = 57.4 bits (137), Expect = 8e-09
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKEE 276
           LINQKCHVK KDIRKFLDGIYVS+KGA+  E
Sbjct: 162 LINQKCHVKKKDIRKFLDGIYVSEKGAVVVE 192

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>RL9_ARATH (P49209) 60S ribosomal protein L9|
          Length = 194

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKEE 276
           LINQKCHVK KDIRKFLDGIYVS+K  I EE
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKSKIVEE 193

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>RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A|
          Length = 190

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           I Q C+V+NKDIRKFLDGIYVS++G I+E
Sbjct: 159 IKQICNVRNKDIRKFLDGIYVSERGNIEE 187

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>RL9B_SCHPO (O74905) 60S ribosomal protein L9-B|
          Length = 189

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           I Q C+V+NKDIRKFLDGIYVS++G I+E
Sbjct: 159 IKQICNVRNKDIRKFLDGIYVSERGNIEE 187

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>RL9_RAT (P17077) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG +++
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ 189

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>RL9_MOUSE (P51410) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG +++
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ 189

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>RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG +++
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ 189

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>RL9_ICTPU (Q90YW0) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG + E
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVVE 189

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>RL9_HUMAN (P32969) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG +++
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ 189

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>RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9|
          Length = 192

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIKE 279
           LI Q   VKNKDIRKFLDGIYVS+KG +++
Sbjct: 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ 189

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>RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)|
          Length = 191

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGAIKEE 276
           + Q C V+NKDIRKFLDGIYVS KG I E+
Sbjct: 161 LQQICRVRNKDIRKFLDGIYVSHKGFITED 190

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>RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)|
          Length = 191

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGAIKEE 276
           + Q C V+NKDIRKFLDGIYVS KG I E+
Sbjct: 161 LQQICRVRNKDIRKFLDGIYVSHKGFIVED 190

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>RL9_SPOFR (Q963B7) 60S ribosomal protein L9|
          Length = 190

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAIK 282
           LI Q   VKNKDIRKFLDG+YVS+K  ++
Sbjct: 158 LIQQSTTVKNKDIRKFLDGLYVSEKTTVE 186

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>RL9_DROME (P50882) 60S ribosomal protein L9|
          Length = 190

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 368 LINQKCHVKNKDIRKFLDGIYVSDKGAI 285
           LI Q   VKNKDIRKFLDG+YVS+K  +
Sbjct: 158 LIQQSTTVKNKDIRKFLDGLYVSEKTTV 185

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>RL9_CAEEL (Q95Y90) 60S ribosomal protein L9|
          Length = 189

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGAI 285
           I Q   VK KDIRKFLDGIYVS+K  I
Sbjct: 159 IQQSTAVKEKDIRKFLDGIYVSEKTTI 185

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>DNAJ1_CORGL (Q8NNB4) Chaperone protein dnaJ 1|
          Length = 382

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +2

Query: 47  SNTLSLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDNDNTKTM 226
           ++ ++L   G+ K R +  G+ M   +   +F  T L + T +  LEE++NH +DN    
Sbjct: 308 NDVITLDGEGMPKLRAEGHGNLMAHVD---LFVPTDLDDRTREL-LEEIRNHRSDNASVH 363

Query: 227 KHGRQKHSFWD 259
           + G ++  F+D
Sbjct: 364 REGGEESGFFD 374

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>RL6_AERPE (Q9YF91) 50S ribosomal protein L6P|
          Length = 182

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 347 VKNKDIRKFLDGIYVSDKGAI 285
           VK+KD RKF+DGIY+ ++  I
Sbjct: 161 VKDKDRRKFMDGIYIYEREVI 181

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>SETBP_HUMAN (Q9Y6X0) SET-binding protein (SEB)|
          Length = 1542

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
 Frame = +2

Query: 14   NTAAHSCPVLTSNTLSLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTK------ 175
            N+ +H C + +   ++L P+  + H  +++  +   G  +N     +  +S ++      
Sbjct: 783  NSPSHLCEIGSLKEITLSPVS-ESHSEETIPSDSGIGTDNNSTSDQAEKSSESRRRYSFD 841

Query: 176  -FSLEEVQNHDNDNTKTMKHG-RQKHSFWDNFL 268
              SL+  +   +D +   +HG RQKH   DNFL
Sbjct: 842  FCSLDNPEAIPSDTSTKNRHGHRQKHLIVDNFL 874

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>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 125  NRDNMFHSTSLINSTTK--FSLEEVQNHDNDNTKTMKHGRQKHSFWDNFLL 271
            N +N+    S I S     FSL++  NH  D  K MK GR+K    D+ L+
Sbjct: 3014 NPNNLDEIKSFIASEVLKLFSLKKEPNHKTDWQKMMKFGRKKRDRVDHILV 3064

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>DPOE_CANGA (Q6FNY7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
           (DNA polymerase II subunit A)
          Length = 2217

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 35  PVLTSNTLSLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHD 205
           P+L  N  + Q   V KH   S G+ ML  N +    S+       K  +E+++ +D
Sbjct: 190 PILAENESNKQQRNVFKHSNISNGNGMLSSNVNRFASSSVQDKKDAKQYIEDIREYD 246

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>THSB_ARCFU (O28821) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit)
          Length = 545

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  DN+
Sbjct: 42  TLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNE 92

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>THSA_ARCFU (O28045) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 545

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  DN+
Sbjct: 42  TLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNE 92

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>PTPX_CANAL (P43078) Probable tyrosine-protein phosphatase (EC 3.1.3.48)|
          Length = 597

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 29  SCPVLTSNTLSLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSL---INSTTKFSLEEVQN 199
           S P+ T   L   PLGVD+    S+    +Q + +  F++ +L   +NS+   + +E  N
Sbjct: 317 SSPLSTPPRLH-SPLGVDRGLPISMSP--IQSSLNQKFNNITLQTPLNSSFSINNDEATN 373

Query: 200 HDNDNTKTMKHGRQKHSFWDNFLLST 277
            +N N K   +     +   N +LST
Sbjct: 374 FNNKNNKNNNNNSTATTTITNTILST 399

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>ELO3_CAEEL (P49191) Putative fatty acid elongation protein 3|
          Length = 320

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
 Frame = -2

Query: 167 WS*LGMCYGTCYLYYPA-------TYCRRENRYDAYLPLKAE-----DLRYLRLKQDMN 27
           W  LG+C+G  + Y+          Y ++ NRY      K E     D   L  K+D+N
Sbjct: 239 WDNLGLCFGVYFTYFLLFANFFYHAYVKKNNRYTEVKKDKKEKEEPVDFEILEPKEDIN 297

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>MLO2_ARATH (Q9SXB6) MLO-like protein 2 (AtMlo2)|
          Length = 573

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 83  KHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND-NTKTMKHGRQKHSFWD 259
           KH   S  +           H +S I+    F+   V+N+ +  + +   HG  +H FWD
Sbjct: 468 KHGRHSGSNTPFSSRPTTPTHGSSPIHLLHNFNNRSVENYPSSPSPRYSGHGHHEHQFWD 527

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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 348 RQEQGYQEVLGWYLRQRQGRHQGG 277
           +++QG Q+V GW  + +QG HQ G
Sbjct: 102 QKKQGKQQVQGWTKQGQQGGHQQG 125

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>H6ST2_BRARE (Q800H9) Heparan-sulfate 6-O-sulfotransferase 2 (EC 2.8.2.-)|
           (HS6ST-2)
          Length = 468

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 252 KLCFCLPCFIXXXXXXXXX*TSSRLNFVVELIRDVLWNMLS 130
           +L  C+P F+          T SR  + + ++RD +W  LS
Sbjct: 165 ELTNCVPSFMSNRESQERRMTPSRNYYYITILRDPVWRYLS 205

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>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +2

Query: 89  RTDSLGDNMLQGNRDNMFHSTSLINST------TKFSLEEVQNHDNDNTKT 223
           R +S   N+ + N  NM+   S+INST          +  + NHD D  KT
Sbjct: 318 RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQVTFIDNHDMDRFKT 368

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>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +2

Query: 89  RTDSLGDNMLQGNRDNMFHSTSLINST------TKFSLEEVQNHDNDNTKT 223
           R +S   N+ + N  NM+   S+INST          +  + NHD D  KT
Sbjct: 318 RFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQVTFIDNHDMDRFKT 368

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>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 548

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     L +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKE 92

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>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 548

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     L +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKE 92

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>RL6_HALMA (P14135) 50S ribosomal protein L6P (Hmal6) (Hl10)|
          Length = 177

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDK 294
           I Q   + +KD+R F DG+Y++ K
Sbjct: 148 IEQLTRINDKDVRVFQDGVYITRK 171

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>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 549

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     L +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKE 92

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>THSB_SULSO (Q9V2T8) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit) (Thermophilic factor 55 beta) (TF55-beta)
          Length = 554

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 68  PLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDN---DNTKT 223
           P G+DK   DSLGD  +  +   +     L + T K  ++  +  D    D TKT
Sbjct: 51  PRGMDKMLVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKT 105

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>EME1_CANGA (Q6FM02) Crossover junction endonuclease EME1 (EC 3.1.22.-)|
          Length = 580

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 95  DSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDNDNTKTMKHGRQKHS 250
           DSL + ++  N DN+ H T  I+ + + S+  V +   ++  T     QK S
Sbjct: 18  DSLIEEIISDNNDNVIHPTE-IDESIEISIPYVNDKTAESNSTSLGNSQKES 68

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>THS_DESSY (Q53546) Thermosome subunit (Hyperthermophilic heat shock protein)|
           (HHSP)
          Length = 545

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92

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>THSB_THEK8 (O24732) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit)
          Length = 545

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92

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>THS_PYRAB (Q9V2Q7) Thermosome subunit (Chaperonin subunit)|
          Length = 550

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92

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>THSB_THEK1 (O24730) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit)
          Length = 546

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92

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>THSB_PYRKO (Q52500) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin|
           beta subunit)
          Length = 546

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92

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>PALF_DEBHA (Q6BY20) pH-response regulator protein palF/RIM8|
          Length = 782

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
 Frame = +2

Query: 131 DNMFHSTSLINSTTKFSLE--------EVQNHD----NDNTKT---MKHGRQKHS 250
           DN++HS +L+NS  +   E        E  NHD    ND+  T   M  GR  +S
Sbjct: 717 DNLYHSNNLLNSHAEIDSESTDWVPNYETANHDILLENDHVSTGTNMHPGRNANS 771

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>RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)|
          Length = 177

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 365 INQKCHVKNKDIRKFLDGIYVSDKGA 288
           I Q   V +KD R F DG+Y+ +K A
Sbjct: 148 IEQLTRVTDKDTRVFQDGVYIVEKPA 173

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>THS_PYRHO (O57762) Thermosome subunit (Chaperonin subunit)|
          Length = 549

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 59  SLQPLGVDKHRTDSLGDNMLQGNRDNMFHSTSLINSTTKFSLEEVQNHDND 211
           +L P G+DK   DSLGD ++  +   +     + +   K  +E  +  D +
Sbjct: 42  TLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKE 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,451,308
Number of Sequences: 219361
Number of extensions: 714832
Number of successful extensions: 2158
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result