>LEP4_MYXXA (O30387) Type 4 prepilin-like proteins leader peptide-processing|
           enzyme [Includes: Leader peptidase (EC 3.4.23.43)
           (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)]
          Length = 335

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 258 LIFAAMTMYSWLWLLVDGTXSVTCLAPKIFCYCSRWLLSLS 136
           L FA +  + W + LV     V+ L P  F     W+L LS
Sbjct: 95  LFFACLRRFGWTYELVPALVLVSLLVPLAFIDLDHWILPLS 135

>PALF_KLULA (Q6CTM7) pH-response regulator protein palF/RIM8|
          Length = 572

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 87  GGQKKAYFACLMXSSHLIETITICYNNKRFWVLNK*LXQXHPPI 218
           GG+ K  F+C +   +L+ +I     + R+WV  +   Q  PPI
Sbjct: 133 GGEHKFPFSCKINGKNLVSSIDFKKGSIRYWVQAELHAQKTPPI 176

>Y338_MYCGE (P47580) Hypothetical lipoprotein MG338 precursor|
          Length = 1271

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 20   WQNLRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNXFLSSDRDNNHLLQ*QKIL-GAKQVT 196
            W+N ++NSL + K I  S+ + +   +G   L    L  +    H  + Q+IL G K++ 
Sbjct: 1198 WKNNKANSLGLKKEIFMSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRLY 1257

Query: 197  DXVPST 214
            D +  T
Sbjct: 1258 DILGQT 1263

>M1_DHVI1 (Q01479) Matrix protein 1 (M1)|
          Length = 270

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 29  LRSNSLAVLKLIMSSIKLSRGAKKGLFRLLNXFLSSDRDNNHLLQ*QKILGAKQVTDXV 205
           L SN L   K  M+S+K    AK GL  + N   S DR+   +L    IL  + +   V
Sbjct: 73  LISNRLKGGKYDMNSVKKGYKAKDGLQEISNYISSLDREGKQVLACMLILSTQSIGKTV 131

>HDA4_CAEBR (Q613L4) Histone deacetylase 4|
          Length = 892

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 215 NNHNQEYIVIAAKINQADSSTGATGGA 295
           ++ +  + V+ A++ +A SSTG+TGGA
Sbjct: 5   SSSSSSFPVVFARMEEASSSTGSTGGA 31

>DAPD_BUCBP (Q89AP4) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate|
           N-succinyltransferase (EC 2.3.1.117)
           (Tetrahydrodipicolinate N-succinyltransferase) (THP
           succinyltransferase) (Tetrahydropicolinate succinylase)
          Length = 274

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 137 DRDNNHLLQ*QKILGAKQVTDXVPSTNNHNQEYIVIAAKIN-QADSSTG 280
           DR+N  +L  +   G+  V   +PS NN N   +VI  ++N Q  S TG
Sbjct: 216 DRNNKKILYGKVPSGSVVVPGSLPSKNNCNLYCVVIVKQVNAQTLSKTG 264

>YCZ2_SCHPO (O74556) Putative mannan endo-1,6-alpha-mannosidase C970.02|
           precursor (EC 3.2.1.101) (Endo-alpha-1->6-D-mannanase
           C970.02)
          Length = 442

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 164 IVADGYCLYQMRGTH*AGEIGLFLPP 87
           +VADG   Y   G H  G IG+FLPP
Sbjct: 36  LVADGLLNYYA-GQHKGGTIGMFLPP 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,203,424
Number of Sequences: 219361
Number of extensions: 728467
Number of successful extensions: 1321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)