ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA 107 2e-20
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
3dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
4dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 2e-20
5dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for ... 107 2e-20
6gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence 52 0.001
7gb|AY104226.1| Zea mays PCO060710 mRNA sequence 52 0.001
8dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transp... 52 0.001
9dbj|AP001295.1| Mus musculus genomic DNA, chromosome 7, clone:B9... 44 0.25
10gb|AC012540.12| Mus musculus chromosome 7, clone RP23-101N20, co... 44 0.25
11gb|AC140448.3| Mus musculus BAC clone RP23-54G12 from chromosome... 42 0.99
12gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, com... 42 0.99
13emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chro... 42 0.99
14emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chro... 42 0.99
15gb|AC092290.3| Homo sapiens chromosome 5 clone CTD-2376K3, compl... 42 0.99
16gb|AC008610.7| Homo sapiens chromosome 5 clone CTB-129O4, comple... 42 0.99
17gb|DQ066599.1| Homo sapiens mitogen-activated protein kinase 9 (... 42 0.99
18gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 3.9
19gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, co... 40 3.9
20emb|BX901957.4| Zebrafish DNA sequence from clone CH211-150G5 in... 40 3.9
21gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosom... 40 3.9
22emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chr... 40 3.9
23emb|AL512655.17| Human DNA sequence from clone RP11-536C2 on chr... 40 3.9
24emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chr... 40 3.9
25dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 40 3.9
26gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, compl... 40 3.9
27gb|AC022203.4|AC022203 Homo sapiens BAC clone RP11-490K15 from 1... 40 3.9
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
29gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049... 40 3.9
30gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Can... 40 3.9
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
32emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.9 
>ref|XM_467970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1612

 Score =  107 bits (54), Expect = 2e-20
 Identities = 78/85 (91%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 9    agtacaggtgatggcagaacctgcgctctaacagccttgctgtcctaaaacttattatg- 67
            ||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||||| 
Sbjct: 1537 agtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttattatgt 1478

                                     
Query: 68   -tcaagcatcaaactttcccggggg 91
             ||||||||||||||||||||||||
Sbjct: 1477 atcaagcatcaaactttcccggggg 1453
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 2e-20
 Identities = 78/85 (91%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                            
Query: 9        agtacaggtgatggcagaacctgcgctctaacagccttgctgtcctaaaacttattatg- 67
                ||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||||| 
Sbjct: 32337955 agtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttattatgt 32338014

                                         
Query: 68       -tcaagcatcaaactttcccggggg 91
                 ||||||||||||||||||||||||
Sbjct: 32338015 atcaagcatcaaactttcccggggg 32338039
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>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A11
          Length = 132352

 Score =  107 bits (54), Expect = 2e-20
 Identities = 78/85 (91%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                          
Query: 9      agtacaggtgatggcagaacctgcgctctaacagccttgctgtcctaaaacttattatg- 67
              ||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||||| 
Sbjct: 113787 agtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttattatgt 113846

                                       
Query: 68     -tcaagcatcaaactttcccggggg 91
               ||||||||||||||||||||||||
Sbjct: 113847 atcaagcatcaaactttcccggggg 113871
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>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full
            insert sequence
          Length = 1612

 Score =  107 bits (54), Expect = 2e-20
 Identities = 78/85 (91%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 9    agtacaggtgatggcagaacctgcgctctaacagccttgctgtcctaaaacttattatg- 67
            ||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||||| 
Sbjct: 1537 agtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttattatgt 1478

                                     
Query: 68   -tcaagcatcaaactttcccggggg 91
             ||||||||||||||||||||||||
Sbjct: 1477 atcaagcatcaaactttcccggggg 1453
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>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial
            phosphate transporter, complete cds
          Length = 1552

 Score =  107 bits (54), Expect = 2e-20
 Identities = 78/85 (91%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 9    agtacaggtgatggcagaacctgcgctctaacagccttgctgtcctaaaacttattatg- 67
            ||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||||| 
Sbjct: 1502 agtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttattatgt 1443

                                     
Query: 68   -tcaagcatcaaactttcccggggg 91
             ||||||||||||||||||||||||
Sbjct: 1442 atcaagcatcaaactttcccggggg 1418
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>gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence
          Length = 958

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 103 cctatttcgcctgcttaatgngttcctctcatc 135
           ||||||||||||| |||||| ||||||||||||
Sbjct: 825 cctatttcgcctgtttaatgagttcctctcatc 793
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>gb|AY104226.1| Zea mays PCO060710 mRNA sequence
          Length = 1639

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 103  cctatttcgcctgcttaatgngttcctctcatc 135
            ||||||||||||| |||||| ||||||||||||
Sbjct: 1394 cctatttcgcctgtttaatgagttcctctcatc 1362



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 26   aacctgcgctctaacagccttgctgtcctaaaacttattatg 67
            |||||||||||||| ||| |||| |||||| || ||||||||
Sbjct: 1470 aacctgcgctctaagagcgttgccgtcctacaaattattatg 1429
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>dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transporter, complete cds
          Length = 1444

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 103  cctatttcgcctgcttaatgngttcctctcatc 135
            ||||||||||||| |||||| ||||||||||||
Sbjct: 1300 cctatttcgcctgtttaatgagttcctctcatc 1268
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>dbj|AP001295.1| Mus musculus genomic DNA, chromosome 7, clone:B96, complete sequence
          Length = 191373

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 43     ccttgctgtcctaaaacttattatgt 68
              ||||||||||||||||||| ||||||
Sbjct: 168528 ccttgctgtcctaaaacttgttatgt 168503
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>gb|AC012540.12| Mus musculus chromosome 7, clone RP23-101N20, complete sequence
          Length = 211091

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 43     ccttgctgtcctaaaacttattatgt 68
              ||||||||||||||||||| ||||||
Sbjct: 124823 ccttgctgtcctaaaacttgttatgt 124848
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>gb|AC140448.3| Mus musculus BAC clone RP23-54G12 from chromosome 9, complete sequence
          Length = 213580

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     agccttgctgtcctaaaactt 61
              |||||||||||||||||||||
Sbjct: 129176 agccttgctgtcctaaaactt 129196
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>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence
          Length = 130895

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 47    gctgtcctaaaacttattatgtcaa 71
             ||||||||| |||||||||||||||
Sbjct: 91948 gctgtcctagaacttattatgtcaa 91972
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>emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 197322

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    tcatagcagcaaaaatcaatc 260
              |||||||||||||||||||||
Sbjct: 120427 tcatagcagcaaaaatcaatc 120447
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>emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chromosome 6, complete
             sequence
          Length = 112533

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   cagcaaaaatcaatcaagctg 266
             |||||||||||||||||||||
Sbjct: 95794 cagcaaaaatcaatcaagctg 95774
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>gb|AC092290.3| Homo sapiens chromosome 5 clone CTD-2376K3, complete sequence
          Length = 80527

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   caataaccacaaccaggaata 234
             |||||||||||||||||||||
Sbjct: 20038 caataaccacaaccaggaata 20058
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>gb|AC008610.7| Homo sapiens chromosome 5 clone CTB-129O4, complete sequence
          Length = 145242

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   caataaccacaaccaggaata 234
             |||||||||||||||||||||
Sbjct: 19800 caataaccacaaccaggaata 19780
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>gb|DQ066599.1| Homo sapiens mitogen-activated protein kinase 9 (MAPK9) gene, complete
             cds
          Length = 48787

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   caataaccacaaccaggaata 234
             |||||||||||||||||||||
Sbjct: 11277 caataaccacaaccaggaata 11297
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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2
             of 11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   aaaaatcaatcaagctgatt 269
             ||||||||||||||||||||
Sbjct: 52211 aaaaatcaatcaagctgatt 52192
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>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence
          Length = 209838

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     tgtcctaaaacttattatgt 68
              ||||||||||||||||||||
Sbjct: 156403 tgtcctaaaacttattatgt 156384
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>emb|BX901957.4| Zebrafish DNA sequence from clone CH211-150G5 in linkage group 15,
              complete sequence
          Length = 175019

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    caatcaagctgattcctcta 275
              ||||||||||||||||||||
Sbjct: 137202 caatcaagctgattcctcta 137183
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>gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosome 16, complete
             sequence
          Length = 150449

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    ccttgctgtcctaaaacttattat 66
             |||||||| |||||||||||||||
Sbjct: 60257 ccttgctgacctaaaacttattat 60280
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>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the
             gene for a novel protein, complete sequence
          Length = 86097

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   agattttgggtgctaaacaa 190
             ||||||||||||||||||||
Sbjct: 22615 agattttgggtgctaaacaa 22634
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>emb|AL512655.17| Human DNA sequence from clone RP11-536C2 on chromosome 13, complete
             sequence
          Length = 146002

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagcaaaaatcaatcaagct 265
             ||||||||||||||||||||
Sbjct: 78085 cagcaaaaatcaatcaagct 78104
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>emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chromosome 13, complete
              sequence
          Length = 164061

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    aaaaatcaatcaagctgatt 269
              ||||||||||||||||||||
Sbjct: 112320 aaaaatcaatcaagctgatt 112301
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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     acaggtgatggcagaacctg 31
              ||||||||||||||||||||
Sbjct: 478097 acaggtgatggcagaacctg 478078
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>gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, complete sequence
          Length = 141513

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      agtacaggtgatggcagaacctgc 32
              |||| |||||||||||||||||||
Sbjct: 134601 agtagaggtgatggcagaacctgc 134624
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>gb|AC022203.4|AC022203 Homo sapiens BAC clone RP11-490K15 from 13, complete sequence
          Length = 177088

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cagcaaaaatcaatcaagct 265
             ||||||||||||||||||||
Sbjct: 13776 cagcaaaaatcaatcaagct 13757
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     atctgctacaataacaaaag 172
               ||||||||||||||||||||
Sbjct: 2840215 atctgctacaataacaaaag 2840196
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>gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049, complete sequence
          Length = 42393

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     agtacaggtgatggcagaacctgc 32
             |||| |||||||||||||||||||
Sbjct: 12223 agtagaggtgatggcagaacctgc 12246
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>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204618

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tgtcctaaaacttattatgt 68
              ||||||||||||||||||||
Sbjct: 197720 tgtcctaaaacttattatgt 197739
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     atctgctacaataacaaaag 172
               ||||||||||||||||||||
Sbjct: 2840159 atctgctacaataacaaaag 2840140
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>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   atctgctacaataacaaaag 172
             ||||||||||||||||||||
Sbjct: 30232 atctgctacaataacaaaag 30251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,244,620
Number of Sequences: 3902068
Number of extensions: 2244620
Number of successful extensions: 41699
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41621
Number of HSP's gapped (non-prelim): 73
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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