ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1g11 |
|---|---|
| Clone Library Name | barley_pub |
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 93.2 bits (230), Expect = 5e-19 Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 413 RWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------ 460 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SF Sbjct: 461 ---------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSF 499 Query: 209 DTKLACE 189 D+KLACE Sbjct: 500 DSKLACE 506
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 93.2 bits (230), Expect = 5e-19 Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 412 RWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------ 459 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SF Sbjct: 460 ---------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSF 498 Query: 209 DTKLACE 189 D+KLACE Sbjct: 499 DSKLACE 505
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 93.2 bits (230), Expect = 5e-19 Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 412 RWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG------------ 459 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 +D + +++QFG+V +D+FTMDY YPL A QAFAI L+SF Sbjct: 460 ---------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSF 498 Query: 209 DTKLACE 189 D+KLACE Sbjct: 499 DSKLACE 505
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 92.0 bits (227), Expect = 1e-18 Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW LV L NK P W+ Q + LNFRGRVT ASVKNFQL Sbjct: 349 RWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQLV-------------- 394 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 +D + +++QFG+V D+FT+DY YPL A QAFAI L+SF Sbjct: 395 -------------------HKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFAISLSSF 435 Query: 209 DTKLACE 189 D+KLACE Sbjct: 436 DSKLACE 442
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 91.7 bits (226), Expect = 1e-18 Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW L+ L NK P W+E + LNF+GRVT ASVKNFQ+ A Sbjct: 450 RWQNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHA------------ 497 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 D + ++LQFG+V +D FT+DYRYPL A QAFAI L+SF Sbjct: 498 ---------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF 536 Query: 209 DTKLACE 189 D KLACE Sbjct: 537 DGKLACE 543
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 90.5 bits (223), Expect = 3e-18 Identities = 53/127 (41%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Frame = -2 Query: 566 RWXGPKERPLV-LRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXX 390 RW L+ L NK P W++ + LNF+GRVT ASVKNFQ+ A Sbjct: 449 RWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA------------ 496 Query: 389 XXXXXXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSF 210 D + ++LQFG+V +D FT+DYRYPL A QAFAI L+SF Sbjct: 497 ---------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF 535 Query: 209 DTKLACE 189 D KLACE Sbjct: 536 DGKLACE 542
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 89.0 bits (219), Expect = 9e-18 Identities = 49/120 (40%), Positives = 64/120 (53%) Frame = -2 Query: 548 ERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXX 369 E + L NK P W++ Q + LNF GRVT ASVKNFQ+ Sbjct: 374 ENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHG------------------- 414 Query: 368 XXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 189 +D + +++QFG+V D+FT+DY YPL A QAFAI L+SFD+KLACE Sbjct: 415 --------------NDPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/117 (41%), Positives = 63/117 (53%) Frame = -2 Query: 539 LVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXX 360 L+L+NK P W ++ + LNF GRVT ASVKNFQ+ Sbjct: 481 LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHP---------------------- 518 Query: 359 XXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 189 + + ++LQFG+V ++FTMD+RYPL QAFAICL+SFD KLACE Sbjct: 519 -----------DEPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLACE 564
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/116 (41%), Positives = 63/116 (54%) Frame = -2 Query: 536 VLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXXX 357 +L NK P+W+++ Q + LNF GRVT ASVKNFQ+ Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQII------------------------- 378 Query: 356 XXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 189 S E +++QFG+++ D FTMD+RYPLSA QAF I +TSF KLACE Sbjct: 379 --------HQSSPEYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 74.7 bits (182), Expect = 2e-13 Identities = 44/117 (37%), Positives = 58/117 (49%) Frame = -2 Query: 557 GPKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXX 378 G K+ L+L NK P W ++ + LNF GRVT ASVKNFQ+ Q Sbjct: 437 GDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIVDPKHQ------------- 483 Query: 377 XXXXXXXXXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFD 207 E ++LQFG+V D FTMD+ +P S QAF+ICL+SF+ Sbjct: 484 --------------------EHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 55.1 bits (131), Expect = 1e-07 Identities = 34/113 (30%), Positives = 50/113 (44%) Frame = -2 Query: 536 VLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXXX 357 V+ NK P W+E Q + L+F GRVT S KNFQ+ QV Sbjct: 1470 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQV------------------- 1510 Query: 356 XXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKL 198 +QFG++ + + +D++YP SA QAFA+ L + +L Sbjct: 1511 -----------------MQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRL 1546
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 54.7 bits (130), Expect = 2e-07 Identities = 34/113 (30%), Positives = 49/113 (43%) Frame = -2 Query: 536 VLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLTAAMPQVTAAAVLXXXXXXXXXXXXX 357 V+ NK P W+E Q + L+F GRVT S KNFQ+ QV Sbjct: 1467 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQV------------------- 1507 Query: 356 XXXXXXXXXXSDHEKVILQFGKVTKDMFTMDYRYPLSAFQAFAICLTSFDTKL 198 +QFG++ + +D++YP SA QAFA+ L + +L Sbjct: 1508 -----------------MQFGRIDGSAYILDFQYPFSAVQAFAVALANVTQRL 1543
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 29.6 bits (65), Expect = 6.5 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 562 GXGPRRGPWSSATRCRDGTNSCSAGASTSEAG*RWPP 452 G G R PW+ T D + SAG +S WPP Sbjct: 533 GSGQSRSPWADLTNEVDMPGAGSAGGKSSPEPWLWPP 569
>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 29.6 bits (65), Expect = 6.5 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 562 GXGPRRGPWSSATRCRDGTNSCSAGASTSEAG*RWPP 452 G G R PW+ T D + SAG +S WPP Sbjct: 533 GSGQSRSPWADLTNEVDMPGAGSAGGKSSPEPWLWPP 569
>VC10A_BPT3 (P19693) Major capsid protein 10A| Length = 347 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 555 AQGEALGPPQQGA--EMARTAAVLVPQLPRPGDGGLREELPADSSHA 421 A +AL P++G + V VP L G G RE+ PAD HA Sbjct: 226 ANYQALLDPERGTIRNVMGFEVVEVPHLTAGGAGDTREDAPADQKHA 272
>VC10B_BPT3 (P19728) Minor capsid protein 10B| Length = 433 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 555 AQGEALGPPQQGA--EMARTAAVLVPQLPRPGDGGLREELPADSSHA 421 A +AL P++G + V VP L G G RE+ PAD HA Sbjct: 226 ANYQALLDPERGTIRNVMGFEVVEVPHLTAGGAGDTREDAPADQKHA 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,359,238 Number of Sequences: 219361 Number of extensions: 1163686 Number of successful extensions: 3526 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3523 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
