ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YFGH_ECOLI (P65290) Hypothetical lipoprotein yfgH precursor 32 1.1
2YFGH_ECO57 (P65291) Hypothetical lipoprotein yfgH precursor 32 1.1
3ELTD1_MOUSE (Q923X1) EGF, latrophilin seven transmembrane domain... 30 5.6
4ACDB1_METJA (Q57616) Acetyl-CoA decarbonylase/synthase complex b... 30 7.2
5NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 prec... 29 9.5

>YFGH_ECOLI (P65290) Hypothetical lipoprotein yfgH precursor|
          Length = 172

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 433 IGSLGNIGKTFGAACSMIGGKKLGNMHDALSNTRT--DGIGALIREGAAAYLNSIVNNKF 260
           +GS  N G T GA    +GG  +G    ++ N +T  +G+    +EG   Y ++ V  + 
Sbjct: 88  VGSGSNSGTTAGA----VGGGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQVGKEC 143

Query: 259 PFTT 248
            FTT
Sbjct: 144 QFTT 147



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>YFGH_ECO57 (P65291) Hypothetical lipoprotein yfgH precursor|
          Length = 172

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 433 IGSLGNIGKTFGAACSMIGGKKLGNMHDALSNTRT--DGIGALIREGAAAYLNSIVNNKF 260
           +GS  N G T GA    +GG  +G    ++ N +T  +G+    +EG   Y ++ V  + 
Sbjct: 88  VGSGSNSGTTAGA----VGGGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQVGKEC 143

Query: 259 PFTT 248
            FTT
Sbjct: 144 QFTT 147



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>ELTD1_MOUSE (Q923X1) EGF, latrophilin seven transmembrane domain-containing|
           protein 1 precursor
          Length = 739

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 269 VHNGVEVCSCPLAYQGAN-TISSSV*EC 349
           VHNGVE C C   Y G   TI   + EC
Sbjct: 35  VHNGVEACFCSQGYSGNGVTICEDIDEC 62



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>ACDB1_METJA (Q57616) Acetyl-CoA decarbonylase/synthase complex beta subunit 1|
           (EC 2.3.1.-) (ACDS complex beta subunit 1) (ACDS complex
           acyltransferase 1)
          Length = 748

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 472 DFWKNHPDAIIAAIGSLGNIGKTFGAACSMIG 377
           D+ KN   A++ A+G L NI    GA C   G
Sbjct: 224 DYLKNRVPAVVVALGELDNITLAAGAGCIKAG 255



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>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) [Contains: Notch 2 extracellular truncation; Notch 2
           intracellular domain]
          Length = 2471

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 275 NGVEVCSCPLAYQGANTISSSV*ECIM 355
           NG  +C+CP AY+GA+  +  V EC M
Sbjct: 396 NGQYICTCPQAYKGAD-CTEDVDECAM 421


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,478,778
Number of Sequences: 219361
Number of extensions: 1707251
Number of successful extensions: 4610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4610
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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