Clone Information

BLAST Search Result

Clone Name	rbags27d15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009646.1\| Triticum aestivum clone wrsu1.pk0006.a3:fis, full...	963	0.0
2	ref\|XM_464784.1\| Oryza sativa (japonica cultivar-group), mRNA	301	1e-78
3	gb\|AY568677.1\| Oryza sativa (japonica cultivar-group) proline- a...	281	1e-72
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
5	dbj\|AP005756.3\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
6	dbj\|AK058752.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	2e-56
7	ref\|NM_191846.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
9	dbj\|AP003343.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
10	dbj\|AK100192.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
11	gb\|AC010242.7\| Homo sapiens chromosome 5 clone CTC-359E10, compl...	46	0.14
12	gb\|AC008816.8\| Homo sapiens chromosome 5 clone CTD-2122K17, comp...	46	0.14
13	gb\|AC010280.7\| Homo sapiens chromosome 5 clone CTC-537E7, comple...	46	0.14
14	gb\|AC017093.3\|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,...	46	0.14
15	gb\|AC010157.12\| Homo sapiens chromosome 10 clone RP11-202D18, co...	44	0.53
16	gb\|AC118627.6\| Mus musculus chromosome 15, clone RP24-91E8, comp...	42	2.1
17	gb\|AY582740.1\| Chlamydomonas reinhardtii Fe-hydrogenase assembly...	42	2.1
18	ref\|XM_451567.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ...	42	2.1
19	gb\|AC129886.3\| Atelerix albiventris clone LB4-234A16, complete s...	42	2.1
20	emb\|CR382122.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	42	2.1
21	gb\|AC159301.2\| Mus musculus BAC clone RP23-213B1 from chromosome...	42	2.1
22	gb\|AC068992.31\| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Canc...	42	2.1
23	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	42	2.1
24	gb\|CP000082.1\| Psychrobacter arcticus 273-4, complete genome	40	8.3
25	gb\|AC102545.9\| Mus musculus chromosome 9, clone RP23-118J13, com...	40	8.3
26	gb\|AC007245.3\| Homo sapiens BAC clone RP11-273L18 from 7, comple...	40	8.3
27	gb\|AC099524.5\| Homo sapiens chromosome 16 clone RP11-960L18, com...	40	8.3
28	emb\|CT025841.2\| Medicago truncatula chromosome 5 clone mth2-131j...	40	8.3
29	ref\|XM_645152.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	8.3
30	gb\|AC010099.10\| Homo sapiens BAC clone RP11-420H19 from 7, compl...	40	8.3
31	emb\|AL161517.2\|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ...	40	8.3
32	emb\|AL049524.1\|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA...	40	8.3
33	gb\|AC159656.11\| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cance...	40	8.3
34	gb\|AY113188.1\| Mastigamoeba balamuthi aldehyde-alcohol dehydroge...	40	8.3
35	emb\|BX470154.5\| Zebrafish DNA sequence from clone CH211-81N22, c...	40	8.3
36	gb\|AC093597.3\| Homo sapiens BAC clone RP11-187O17 from 4, comple...	40	8.3
37	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.3
38	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
39	dbj\|AP004571.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
40	dbj\|AP004236.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
41	dbj\|AK120657.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.3
42	gb\|AF118222.1\|F3H7 Arabidopsis thaliana BAC F3H7	40	8.3
43	gb\|AF142686.1\| Cyclolobium nutans maturase-like protein (matK) g...	40	8.3
44	gb\|AC006120.1\|AC006120 Homo sapiens chromosome 17, clone hRPK.34...	40	8.3
45	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	40	8.3
46	gb\|AC155302.2\| Mus musculus BAC clone RP24-227A11 from chromosom...	40	8.3
47	gb\|AC140392.3\| Mus musculus BAC clone RP24-89F9 from chromosome ...	40	8.3

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  963 bits (486), Expect = 0.0
 Identities = 567/590 (96%), Gaps = 3/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 25  tagatagtgatat-acatgataaatcaacaaaaaatacgataaatatatcaagccacaag 83
           ||||||||||||| |||||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 69  tagatagtgatattacatgataaaacaacaaaaa-tacaagaaatatatcaagccacaag 127

                                                                       
Query: 84  atagcatcaatcaagaaaaatgcgtggtaggaagaaatttagccaagaaacacccatgac 143
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 128 atagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaatgac 187

                                                                       
Query: 144 taaaactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagca 203
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 taaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagcagca 247

                                                                       
Query: 204 ctatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaac 263
           | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 ccatcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgggaac 307

                                                                       
Query: 264 ttgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaata 323
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 308 ttcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgccaata 367

                                                                       
Query: 324 ccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatc 427

                                                                       
Query: 384 atactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaatt 443
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 428 atactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaact 487

                                                                       
Query: 444 atagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttgga 503
           ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 488 atagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctttgga 547

                                                                       
Query: 504 cttgcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggc 563
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cttgcagggacatcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggc 607

                                                             
Query: 564 gtcggtgtaatgccataaagatggcgtcggtgtagtgccgtaagatggcg 613
           ||||||||| |||| | ||||||||||||||||||||||||||| |||||
Sbjct: 608 gtcggtgtagtgccgt-aagatggcgtcggtgtagtgccgtaagttggcg 656



 Score =  105 bits (53), Expect = 2e-19
 Identities = 69/73 (94%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 541 tcggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtg 600
           |||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||
Sbjct: 609 tcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaa-gttggcgtcggtgtagtg 667

                        
Query: 601 ccgtaagatggcg 613
           |||||||||||||
Sbjct: 668 ccgtaagatggcg 680



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 541 tcggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtg 600
           |||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||
Sbjct: 633 tcggtgtagtgccgtaagttggcgtcggtgtagtgccgtaa-gatggcgtcggtgtagtg 691

                  
Query: 601 ccgtaag 607
           |||||||
Sbjct: 692 ccgtaag 698



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 541 tcggtgtagtgccgtaagatggcgtcggtgt 571
           |||||||||||||||||| ||| ||||||||
Sbjct: 681 tcggtgtagtgccgtaagttggtgtcggtgt 711

to top

>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  301 bits (152), Expect = 1e-78
 Identities = 386/463 (83%), Gaps = 7/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 149 ctagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcactatc 208
           |||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |||
Sbjct: 660 ctagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgccatc 601

                                                                       
Query: 209 agaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttgtt 268
           |||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 600 agaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttctt 541

                                                                       
Query: 269 gttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaataccatc 328
           |||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||||
Sbjct: 540 gttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtaccatc 481

                                                                       
Query: 329 agttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcatact 388
           ||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |||
Sbjct: 480 agttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaact 421

                                                                       
Query: 389 gcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattatagc 448
           ||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || ||| |
Sbjct: 420 gcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgataac 361

                                                                       
Query: 449 gtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggacttgc 508
            ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  | |
Sbjct: 360 atctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaacttc 301

                                                                       
Query: 509 agggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcgg 568
           |||||| |||      ||||| || |||||||| ||||| |||||||||||||| || ||
Sbjct: 300 agggacatca------ggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttgg 247

                                                      
Query: 569 tgtaatgccataaagatggcgtcggtgtagtgccgtaagatgg 611
           |||| |||| | ||||||| || ||||||||||| ||||||||
Sbjct: 246 tgtagtgccgt-aagatggtgttggtgtagtgccataagatgg 205



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 543 ggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtgcc 602
           |||||||||||||||||||| || |||||| |||||| ||||||| || ||||||| |||
Sbjct: 248 ggtgtagtgccgtaagatggtgttggtgtagtgccat-aagatggtgttggtgtagagcc 190

                
Query: 603 gtaag 607
           |||||
Sbjct: 189 gtaag 185

to top

>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  281 bits (142), Expect = 1e-72
 Identities = 385/465 (82%), Gaps = 7/465 (1%)
 Strand = Plus / Minus

                                                                       
Query: 147 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 206
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 726 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 667

                                                                       
Query: 207 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 266
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 666 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 607

                                                                       
Query: 267 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 326
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 606 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 547

                                                                       
Query: 327 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 386
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 546 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 487

                                                                       
Query: 387 ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 446
           ||||| |||| | | | |||| |||| |||| ||||||||||||||||||||  || |||
Sbjct: 486 ctgcaagcagtatcgagtgtcatgccaatgtcgccaagggacccaatagctgagatgata 427

                                                                       
Query: 447 gcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggactt 506
            | ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  |
Sbjct: 426 acatctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaact 367

                                                                       
Query: 507 gcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtc 566
            ||||||| |||      ||||| || |||| ||| ||||| |||||||||||||| || 
Sbjct: 366 tcagggacatca------ggtgtgctgggggagcttggtgtcgtgccgtaagatggtgtt 313

                                                        
Query: 567 ggtgtaatgccataaagatggcgtcggtgtagtgccgtaagatgg 611
           |||||| |||| | ||||||| || ||||||||||| ||||||||
Sbjct: 312 ggtgtagtgccgt-aagatggtgttggtgtagtgccataagatgg 269



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 543 ggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtgcc 602
           |||||||||||||||||||| || |||||| |||||| ||||||| || ||||||| |||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccat-aagatggtgttggtgtagagcc 254

                
Query: 603 gtaag 607
           |||||
Sbjct: 253 gtaag 249

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                           
Query: 147     aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 206
               |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 7323154 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 7323213

                                                                           
Query: 207     tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 266
               |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 7323214 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 7323273

                                                                           
Query: 267     ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 326
               |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 7323274 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 7323333

                                                                           
Query: 327     tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 386
               ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 7323334 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 7323393

                                                                           
Query: 387     ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 446
               ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 7323394 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 7323453

                                    
Query: 447     gcgtctgggtgattcttccag 467
                | ||||| || |||||||||
Sbjct: 7323454 acatctggatggttcttccag 7323474



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 76/88 (86%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                           
Query: 524     aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtaatgccataaag 583
               |||||| || |||||||| ||||| |||||||||||||| || |||||| |||| | |||
Sbjct: 7323610 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgt-aag 7323668

                                           
Query: 584     atggcgtcggtgtagtgccgtaagatgg 611
               |||| || ||||||||||| ||||||||
Sbjct: 7323669 atggtgttggtgtagtgccataagatgg 7323696



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                           
Query: 543     ggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtgcc 602
               |||||||||||||||||||| || |||||| |||||| ||||||| || ||||||| |||
Sbjct: 7323653 ggtgtagtgccgtaagatggtgttggtgtagtgccat-aagatggtgttggtgtagagcc 7323711

                    
Query: 603     gtaag 607
               |||||
Sbjct: 7323712 gtaag 7323716

to top

>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                         
Query: 147   aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 206
             |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 98962 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 99021

                                                                         
Query: 207   tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 266
             |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 99022 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 99081

                                                                         
Query: 267   ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 326
             |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 99082 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 99141

                                                                         
Query: 327   tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 386
             ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 99142 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 99201

                                                                         
Query: 387   ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 446
             ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 99202 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 99261

                                  
Query: 447   gcgtctgggtgattcttccag 467
              | ||||| || |||||||||
Sbjct: 99262 acatctggatggttcttccag 99282



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 76/88 (86%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                         
Query: 524   aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtaatgccataaag 583
             |||||| || |||||||| ||||| |||||||||||||| || |||||| |||| | |||
Sbjct: 99418 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgt-aag 99476

                                         
Query: 584   atggcgtcggtgtagtgccgtaagatgg 611
             |||| || ||||||||||| ||||||||
Sbjct: 99477 atggtgttggtgtagtgccataagatgg 99504



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 543   ggtgtagtgccgtaagatggcgtcggtgtaatgccataaagatggcgtcggtgtagtgcc 602
             |||||||||||||||||||| || |||||| |||||| ||||||| || ||||||| |||
Sbjct: 99461 ggtgtagtgccgtaagatggtgttggtgtagtgccat-aagatggtgttggtgtagagcc 99519

                  
Query: 603   gtaag 607
             |||||
Sbjct: 99520 gtaag 99524

to top

>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  228 bits (115), Expect = 2e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 147 aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 206
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 239 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 180

                                                                       
Query: 207 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 266
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 179 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 120

                                                                       
Query: 267 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 326
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 119 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 60

                                                              
Query: 327 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgcca 377
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 59  tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgcca 9

to top

>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 233  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 286
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 233      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 286
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314

to top

>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 233   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 286
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633

to top

>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 233  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 286
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884

to top

>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 481   caatgaatccatgcttctttgga 503
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

to top

>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 481   caatgaatccatgcttctttgga 503
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

to top

>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 481   caatgaatccatgcttctttgga 503
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691

to top

>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 481   caatgaatccatgcttctttgga 503
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385

to top

>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence
          Length = 160310

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 157   gggattcatttgccttcttgaa 178
             ||||||||||||||||||||||
Sbjct: 91263 gggattcatttgccttcttgaa 91242

to top

>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 507    gcagggacttcatgggaaggt 527
              |||||||||||||||||||||
Sbjct: 115193 gcagggacttcatgggaaggt 115173

to top

>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 523 aaggtgtacttggggtgctcg 543
           |||||||||||||||||||||
Sbjct: 695 aaggtgtacttggggtgctcg 675

to top

>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 tgtaaatgggaacttgttgtt 271
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380

to top

>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   cagttctagtgtttgagagtgcatc 352
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 328   cagttctagtgtttgagagtgcatc 352
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278

to top

>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   tgtaaatgggaacttgttgtt 271
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663

to top

>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 351    tcatgcatatttcctagcttc 371
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440

to top

>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143611

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    tatacatgataaatcaacaaa 55
             |||||||||||||||||||||
Sbjct: 19797 tatacatgataaatcaacaaa 19777

to top

>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 328    cagttctagtgtttgagagtgcatc 352
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 328    cagttctagtgtttgagagtgcatc 352
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550

to top

>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tcaagccacaagatagcatc 91
             ||||||||||||||||||||
Sbjct: 42370 tcaagccacaagatagcatc 42351

to top

>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence
          Length = 241789

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    gccaagaaacacccatgact 144
              ||||||||||||||||||||
Sbjct: 212259 gccaagaaacacccatgact 212278

to top

>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    taggaagaaatttagccaag 130
              ||||||||||||||||||||
Sbjct: 108434 taggaagaaatttagccaag 108453

to top

>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence
          Length = 184518

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 44     taaatcaacaaaaaatacgataaa 67
              ||||||||||||||||| ||||||
Sbjct: 125995 taaatcaacaaaaaataagataaa 125972

to top

>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   ggttgtaaatgggaacttgt 267
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921

to top

>ref|XM_645152.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (233.t00005)
           partial mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  catgataaatcaacaaaaaa 58
           ||||||||||||||||||||
Sbjct: 156 catgataaatcaacaaaaaa 175

to top

>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    gaaatttagccaagaaacac 136
              ||||||||||||||||||||
Sbjct: 123891 gaaatttagccaagaaacac 123872

to top

>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    aagaaatttagccaagaaac 134
              ||||||||||||||||||||
Sbjct: 139883 aagaaatttagccaagaaac 139902

to top

>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aagaaatttagccaagaaac 134
             ||||||||||||||||||||
Sbjct: 79920 aagaaatttagccaagaaac 79939

to top

>gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205702

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     tatacatgataaatcaacaaaaaa 58
              ||||||||||||||||| ||||||
Sbjct: 135229 tatacatgataaatcaaaaaaaaa 135252

to top

>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  atgcagctgccccctcgcgt 308
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738

to top

>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tcatactgcatgcagcacca 401
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553

to top

>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   cagggacttcatgggaaggt 527
             ||||||||||||||||||||
Sbjct: 10827 cagggacttcatgggaaggt 10846

to top

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 213     gtcgcggccacgacgatgca 232
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 53       aaaaaatacgataaatatat 72
                ||||||||||||||||||||
Sbjct: 23056795 aaaaaatacgataaatatat 23056814

to top

>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aaaaaatacgataaatatat 72
              ||||||||||||||||||||
Sbjct: 123339 aaaaaatacgataaatatat 123358

to top

>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   aaaaaatacgataaatatat 72
            ||||||||||||||||||||
Sbjct: 7443 aaaaaatacgataaatatat 7462

to top

>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   aaaaaatacgataaatatat 72
            ||||||||||||||||||||
Sbjct: 1409 aaaaaatacgataaatatat 1428

to top

>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aagaaatttagccaagaaac 134
             ||||||||||||||||||||
Sbjct: 66743 aagaaatttagccaagaaac 66724

to top

>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 478 atccaatgaatccatgcttctttg 501
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701

to top

>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   taggaagaaatttagccaag 130
             ||||||||||||||||||||
Sbjct: 66335 taggaagaaatttagccaag 66354

to top

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     ccaatgaatccatgcttctt 499
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466

to top

>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gaagaccccagcttgggcag 195
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062

to top

>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   gccaagaaacacccatgact 144
             ||||||||||||||||||||
Sbjct: 26173 gccaagaaacacccatgact 26192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,434,871
Number of Sequences: 3902068
Number of extensions: 5434871
Number of successful extensions: 97984
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97734
Number of HSP's gapped (non-prelim): 229
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result