ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27d14 |
|---|---|
| Clone Library Name | barley_pub |
>SPCS3_ARATH (Q9MA96) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 167 Score = 126 bits (316), Expect(2) = 2e-31 Identities = 55/71 (77%), Positives = 62/71 (87%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIV 399 +VSLWD IIPAKEHAKF I +NKYRFIDQG NL+ KDFNLT+HWH+MPKTGKMFADKIV Sbjct: 97 QVSLWDAIIPAKEHAKFRIQVSNKYRFIDQGQNLRGKDFNLTLHWHVMPKTGKMFADKIV 156 Query: 398 MTGYQLPEQYR 366 + GY LP+ YR Sbjct: 157 LPGYSLPDAYR 167 Score = 29.3 bits (64), Expect(2) = 2e-31 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -1 Query: 618 VAAEYETPQNALNQ 577 VAAEYETP+N+LNQ Sbjct: 84 VAAEYETPKNSLNQ 97
>SPCS3_ORYSA (Q9LGB4) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 147 Score = 78.2 bits (191), Expect(2) = 5e-15 Identities = 32/70 (45%), Positives = 46/70 (65%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIV 399 +VSLWD IIP K+ A + +KY IDQGS+L+ K L +HWH+MPK G M D++ Sbjct: 76 QVSLWDHIIPDKDKANLQVEVKSKYPLIDQGSSLRGKKVQLVLHWHVMPKAGVMIRDRMA 135 Query: 398 MTGYQLPEQY 369 ++ + LP+ Y Sbjct: 136 LSEFNLPDSY 145 Score = 22.3 bits (46), Expect(2) = 5e-15 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = -1 Query: 618 VAAEYETPQNALNQ-SLPLGWNH 553 + AEYE +N+LNQ SL W+H Sbjct: 63 LTAEYENSKNSLNQVSL---WDH 82
>SPCS3_CHICK (P28687) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) (gp23) Length = 180 Score = 38.1 bits (87), Expect(2) = 0.002 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAK-FLIHTTNKYRFIDQGSNLKA-KDFNLTMHWHIMPKTG 423 +V LWD II ++ + FL +KY F D G+ LK ++ LT+ W+++P G Sbjct: 102 QVVLWDKIILRGDNPRLFLKDMKSKYFFFDDGNGLKGNRNVTLTLSWNVVPNAG 155 Score = 22.7 bits (47), Expect(2) = 0.002 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -1 Query: 618 VAAEYETPQNALNQ 577 ++AEY T NALNQ Sbjct: 89 LSAEYSTKNNALNQ 102
>SCP3_KLULA (Q6CRY8) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 189 Score = 38.9 bits (89), Expect = 0.012 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLIHTTN-KYRFIDQGSNLKAKDFNLTMHWHIMPKTG 423 ++++WD IIP++++A F + + KY+ D S + + +HW+I P G Sbjct: 112 EITIWDKIIPSRDNATFTLSDIDAKYQLWDLESKITERPLTFKLHWNIQPWFG 164
>SPC3_YARLI (Q6C4R5) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 185 Score = 33.9 bits (76), Expect = 0.39 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLIHTTN-KYRFIDQGSNLKAKDFNLTMHWHIMPKTG 423 ++++WD II K+ + + N KY D + + ++ + +HW+I P G Sbjct: 113 EITIWDQIITDKDDSHIKLKGANSKYSLYDVEESFRNRNATVKLHWNIQPHVG 165
>SPC3_DEBHA (Q6BPD6) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 190 Score = 33.9 bits (76), Expect = 0.39 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLI-HTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKM 417 K++ WD II +KE A L+ + +KY D + + +D + + W++ P G + Sbjct: 112 KITYWDKIITSKEDAVLLLKNQKSKYSVWDIEPSFRQRDAVVKLEWNLQPHIGPL 166
>SPC3_SCHPO (Q10259) Probable microsomal signal peptidase subunit 3 (EC| 3.4.-.-) Length = 185 Score = 33.5 bits (75), Expect = 0.51 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKFLIHTT----NKYRFIDQGSNLKAKDFNLTMHWHIMPKTG 423 +V +WD I+ + E +K + T + F + + + K+ T+HW + PK G Sbjct: 107 QVVVWDKILSSPEESKMFMKDTLSNIQAHPFNEYSNQFEGKNATYTLHWTVSPKMG 162
>SPCS3_CAEEL (P34525) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 180 Score = 32.7 bits (73), Expect = 0.87 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -2 Query: 578 KVSLWDGIIPAKEHAKF-LIHTTNKYRFIDQGSN-LKAKDFNLTMHWHIMPKTGKMFADK 405 +V LWD I+ + I +KY F+D G+N L K+ + ++++P +G + + Sbjct: 102 QVVLWDRIVERADRVVMDEIGVKSKYYFLDDGTNLLNHKNVTFVLRYNVIPNSGYL---R 158 Query: 404 IVMTGYQLPEQYR*TTTVPKRT 339 +V + Q+ + T T +R+ Sbjct: 159 LVQSSDQVVVPFPTTYTTTRRS 180
>LEPA_STRT2 (Q5M4M2) GTP-binding protein lepA| Length = 610 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +1 Query: 4 NSAEIQKRKEKVRKQSV-QHLNSGAAWIGIEIQQGF----ARTRAGQLLTSKFRIRQLTI 168 N E+++R+EK+R S+ H++ G + + I + +R QLL S R+ I Sbjct: 3 NIEELKQRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGI 62 Query: 169 RIRLAHIRLTYK 204 I+L I L YK Sbjct: 63 TIKLNAIELNYK 74
>LEPA_STRT1 (Q5M008) GTP-binding protein lepA| Length = 610 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +1 Query: 4 NSAEIQKRKEKVRKQSV-QHLNSGAAWIGIEIQQGF----ARTRAGQLLTSKFRIRQLTI 168 N E+++R+EK+R S+ H++ G + + I + +R QLL S R+ I Sbjct: 3 NIEELKQRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGI 62 Query: 169 RIRLAHIRLTYK 204 I+L I L YK Sbjct: 63 TIKLNAIELNYK 74
>HEMH_LISMO (Q8Y565) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 309 Score = 30.0 bits (66), Expect = 5.7 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = -2 Query: 557 IIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLP 378 I+ A ++ F + NK R + L N W+ PK +M+AD+I T Q+P Sbjct: 110 IVLAPHYSSFSVEAYNK-RAKEAADKLGGPRINAINDWYKQPKFIQMWADRINETAKQIP 168
>LEPA_LACLA (Q9CGI8) GTP-binding protein lepA| Length = 607 Score = 30.0 bits (66), Expect = 5.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +1 Query: 1 VNSAEIQKRKEKVRKQSV-QHLNSGAAWIGIEIQQGFA----RTRAGQLLTSKFRIRQLT 165 +N E+ RKEK+R S+ H++ G + + I + R QLL S R+ Sbjct: 1 MNLQEMNARKEKIRNFSIIAHIDHGKSTLADRILEQTETVSKREMQAQLLDSMDLERERG 60 Query: 166 IRIRLAHIRLTYK 204 I I+L I L YK Sbjct: 61 ITIKLNAIELNYK 73
>HEMH_LISIN (Q929G2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 309 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -2 Query: 557 IIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLP 378 I+ A ++ F + NK R D L W+ PK +M+AD+I T Q+P Sbjct: 110 IVLAPHYSSFSVEAYNK-RAKDAADKLGGIHIQAINDWYKQPKFIQMWADRINETAKQIP 168 Query: 377 EQ 372 + Sbjct: 169 AE 170
>SYE2_CAMJR (Q5HTB9) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 463 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = -1 Query: 597 PQNALNQSLPLGWNHTG------EGARQVFDPYH 514 PQ LN + LGW+H E +++FDPYH Sbjct: 260 PQALLNFLVRLGWSHGDDEVFSLEDLKKLFDPYH 293
>SYE1_CAMJE (O52914) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA| ligase 1) (GluRS 1) Length = 463 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = -1 Query: 597 PQNALNQSLPLGWNHTG------EGARQVFDPYH 514 PQ LN + LGW+H E +++FDPYH Sbjct: 260 PQALLNFLVRLGWSHGDDEVFSLEDLKKLFDPYH 293 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,061,530 Number of Sequences: 219361 Number of extensions: 1880855 Number of successful extensions: 5192 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5021 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5189 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
