ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26o07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 250 4e-63
2gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 224 2e-55
3emb|Z48728.1|HVBPR1X1 H.vulgare Bpr1-1 gene for type-1 pathogene... 92 2e-15
4gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt... 68 3e-08
5ref|XM_476874.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
6ref|XM_506200.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
8dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10dbj|AK104002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
11dbj|AK102456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
12dbj|AK066734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
13gb|AY107255.1| Zea mays PCO145511 mRNA sequence 56 1e-04
14dbj|D26085.1|PETZFDB3 Petunia zinc-finger DNA binding protein gene 46 0.11
15emb|AL731850.7| Zebrafish DNA sequence from clone BUSM1-57I23 in... 44 0.45
16emb|BX510646.5| Zebrafish DNA sequence from clone CH211-221B16 i... 44 0.45
17gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, compl... 44 0.45
18emb|AL713959.16| Zebrafish DNA sequence from clone XX-158F24 in ... 44 0.45
19gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, com... 42 1.8
20emb|BX294660.18| Zebrafish DNA sequence from clone CH211-234D4 i... 42 1.8
21gb|AC013549.9| Homo sapiens chromosome 11, clone RP11-47J17, com... 42 1.8
22emb|BX465183.9| Zebrafish DNA sequence from clone CH211-250A23 i... 42 1.8
23emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 i... 42 1.8
24emb|BX511003.9| Zebrafish DNA sequence from clone CH211-69F16 in... 42 1.8
25emb|BX855591.11| Zebrafish DNA sequence from clone DKEY-237H21 i... 42 1.8
26emb|BX649374.3| Sminthopsis DNA sequence from clone RZPD668-106P... 42 1.8
27emb|BX470181.7| Zebrafish DNA sequence from clone CH211-91P22 in... 42 1.8
28emb|CR925755.8| Zebrafish DNA sequence from clone CH211-138M24 i... 42 1.8
29gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete... 40 7.0
30gb|AC131577.16| Mus musculus chromosome 1, clone RP23-23I4, comp... 40 7.0
31gb|AC109139.15| Mus musculus chromosome 8, clone RP23-47L13, com... 40 7.0
32gb|AC091465.7| Mus musculus chromosome 1, clone RP23-221K1, comp... 40 7.0
33gb|AC116996.3| Mus musculus BAC clone RP23-6B22 from 15, complet... 40 7.0
34gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, comple... 40 7.0
35emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, co... 40 7.0
36ref|XM_962569.1| PREDICTED: Tribolium castaneum similar to CG122... 40 7.0
37emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in ... 40 7.0
38emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 40 7.0
39ref|NM_132520.2| Drosophila melanogaster Karl CG4139-RB, transcr... 40 7.0
40gb|AY038185.1| Drosophila melanogaster Karl mRNA, complete cds 40 7.0
41gb|AC004470.2| Homo sapiens X BAC GS1-433O24 (Genome Systems Hum... 40 7.0
42gb|AC084599.1|CBRG42P09 Caenorhabditis briggsae cosmid G42P09, c... 40 7.0
43gb|AC125005.15| Mus musculus chromosome 5, clone RP23-370D2, com... 40 7.0
44dbj|BS000026.1| Pan troglodytes chromosome 22 clone:RP43-035C07,... 40 7.0
45dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, ... 40 7.0
46emb|CR759908.11| Zebrafish DNA sequence from clone DKEYP-38F5 in... 40 7.0
47emb|BX936317.16| Zebrafish DNA sequence from clone CH211-208C9 i... 40 7.0
48emb|AL929208.9| Zebrafish DNA sequence from clone DKEY-56P7 in l... 40 7.0
49gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 ... 40 7.0
50dbj|AP001667.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.0
51emb|CR555302.7| Zebrafish DNA sequence from clone CH211-212C19 i... 40 7.0
52gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, comp... 40 7.0
53emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 i... 40 7.0
54emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, ... 40 7.0
55gb|CP000166.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.0
56gb|U52952.1|DMU52952 Drosophila melanogaster CKII beta subunit (... 40 7.0
57gb|AC140299.2| Mus musculus BAC clone RP23-363J15 from 10, compl... 40 7.0
58gb|AC160934.2| Mus musculus BAC clone RP23-435H22 from chromosom... 40 7.0
59gb|M61157.1|DROEAG D.melanogaster putative potassium channel pro... 40 7.0
60dbj|AP001172.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 7.0 
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  250 bits (126), Expect = 4e-63
 Identities = 217/248 (87%)
 Strand = Plus / Minus

                                                                         
Query: 19    cggtttaaaaggcacgattggaaaatctctgggatnaaggtaatnatcgattggttgtga 78
             ||||||| |||||||| |||||||||||||||||  |||||| | | | |||| ||||| 
Sbjct: 27075 cggtttagaaggcacgcttggaaaatctctgggaccaaggtattcaccaattgattgtgg 27016

                                                                         
Query: 79    gatgtagcaggtgtaaatgctaatgcgcctaatcaactaagaaaatactagtataaatgt 138
             ||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||  |||| 
Sbjct: 27015 gatttagtaggtgtagatgctaatgcgcctaatcaactgagaaaatactagtactaatgc 26956

                                                                         
Query: 139   gtgagcagcaaattgggagggcatatgcatgagtagtactagtactaattaataggaata 198
             |||||||||||||| | |||||  |||||||||||||||||||||||||||||  || ||
Sbjct: 26955 gtgagcagcaaattagtagggcgcatgcatgagtagtactagtactaattaatgagagta 26896

                                                                         
Query: 199   attgatttcgcgtcttaaaccttgtttattttcaaaacacacgcaagtttaactgtgcct 258
             |||| |||| || |||||| |||||||||||| ||||  |||||||||||||||||||||
Sbjct: 26895 attgctttcacgccttaaatcttgtttattttgaaaatgcacgcaagtttaactgtgcct 26836

                     
Query: 259   tctaaacc 266
             ||||||||
Sbjct: 26835 tctaaacc 26828



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 253   gtgccttctaaaccgtggtggagggagta 281
             |||||||||||||||||  ||||||||||
Sbjct: 27061 gtgccttctaaaccgtgacggagggagta 27089
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score =  224 bits (113), Expect = 2e-55
 Identities = 210/243 (86%)
 Strand = Plus / Plus

                                                                          
Query: 39     gaaaatctctgggatnaaggtaatnatcgattggttgtgagatgtagcaggtgtaaatgc 98
              ||||||||||| ||  |||||| | | |||||||||||||||||||| ||||||| ||||
Sbjct: 147673 gaaaatctctgagaccaaggtagtcaccgattggttgtgagatgtagtaggtgtagatgc 147732

                                                                          
Query: 99     taatgcgcctaatcaactaagaaaatactagtataaatgtgtgagcagcaaattgggagg 158
              ||||| |||||||||||| |||||||| || ||  |||| |||||||||||||| |||||
Sbjct: 147733 taatgtgcctaatcaactgagaaaatagtaatactaatgcgtgagcagcaaattaggagg 147792

                                                                          
Query: 159    gcatatgcatgagtagtactagtactaattaataggaataattgatttcgcgtcttaaac 218
               |  ||||||||||||||||| ||||||||||||||| |||||  |||||   |||||||
Sbjct: 147793 acgcatgcatgagtagtactaatactaattaataggagtaatttctttcgttccttaaac 147852

                                                                          
Query: 219    cttgtttattttcaaaacacacgcaagtttaactgtgccttctaaaccgtggtggaggga 278
              ||||| ||||||  ||||  |||||||||||||||||||||||||||||||  |||||||
Sbjct: 147853 cttgtctattttagaaacgtacgcaagtttaactgtgccttctaaaccgtgacggaggga 147912

                 
Query: 279    gta 281
              |||
Sbjct: 147913 gta 147915



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 253    gtgccttctaaaccgtggtggagggagta 281
              |||||||||||||||||  ||||||||||
Sbjct: 147668 gtgccttctaaaccgtgacggagggagta 147640
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>emb|Z48728.1|HVBPR1X1 H.vulgare Bpr1-1 gene for type-1 pathogenesis-related protein
          Length = 1444

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 166 catgagtagtactagtactaattaataggaataattgatttcgcgtcttaaaccttgttt 225
           |||||||||||||| ||||||||||||||| |||||| || | || ||||||| |||| |
Sbjct: 9   catgagtagtactaatactaattaataggagtaattgtttccacgccttaaactttgtct 68

                                         
Query: 226 attttcaaaacacacgcaagtttaactgtg 255
           ||||| ||||  ||||||||||||||||||
Sbjct: 69  attttaaaaatgcacgcaagtttaactgtg 98
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>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds
          Length = 3238

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 181 tactaattaataggaataattgatttcgcgtcttaaaccttgtttattttcaaaacacac 240
           |||||||||||| || |||||  ||||| |||||||||||||  |||||| ||||  |||
Sbjct: 49  tactaattaataagagtaattactttcgagtcttaaaccttgcctattttgaaaatgcac 108

                                     
Query: 241 gcaagtttaactgtgccttctaaacc 266
           |||||||||| | || ||||||||||
Sbjct: 109 gcaagtttaattttgtcttctaaacc 134
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>ref|XM_476874.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1160

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 1072 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 1013

               
Query: 519  ctt 521
            |||
Sbjct: 1012 ctt 1010
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>ref|XM_506200.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1506_G02.1
            patrial mRNA
          Length = 1161

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 1073 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 1014

               
Query: 519  ctt 521
            |||
Sbjct: 1013 ctt 1011
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                           
Query: 459     tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
               ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 4362839 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 4362898

                  
Query: 519     ctt 521
               |||
Sbjct: 4362899 ctt 4362901
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1506_G02
          Length = 106742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 2688 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 2747

               
Query: 519  ctt 521
            |||
Sbjct: 2748 ctt 2750
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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 459    tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
              ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 183893 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 183952

                 
Query: 519    ctt 521
              |||
Sbjct: 183953 ctt 183955
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>dbj|AK104002.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G11, full
            insert sequence
          Length = 1256

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 1072 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 1013

               
Query: 519  ctt 521
            |||
Sbjct: 1012 ctt 1010
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>dbj|AK102456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094B09, full
            insert sequence
          Length = 2873

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 2690 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 2631

               
Query: 519  ctt 521
            |||
Sbjct: 2630 ctt 2628
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>dbj|AK066734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013078I01, full
            insert sequence
          Length = 1257

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 459  tgtttcatggaaatgcggcctttaggctcttggctaattcttccagcttcttcaaccctt 518
            ||||||| || ||||| ||||| |||||||||||||  ||||| ||||||||||| ||||
Sbjct: 1073 tgtttcagggcaatgcagccttcaggctcttggctagctcttctagcttcttcaatcctt 1014

               
Query: 519  ctt 521
            |||
Sbjct: 1013 ctt 1011
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>gb|AY107255.1| Zea mays PCO145511 mRNA sequence
          Length = 769

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 470 aatgcggcctttaggctcttggctaattcttccagcttcttcaacccttctt 521
           ||||||||||| ||| ||||||| || ||||| ||||||||||| |||||||
Sbjct: 607 aatgcggccttcaggttcttggcgaactcttctagcttcttcaatccttctt 556
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>dbj|D26085.1|PETZFDB3 Petunia zinc-finger DNA binding protein gene
          Length = 3396

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 160  catatgcatgagtagtactagta 182
            |||||||||||||||||||||||
Sbjct: 1787 catatgcatgagtagtactagta 1809
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>emb|AL731850.7| Zebrafish DNA sequence from clone BUSM1-57I23 in linkage group 9
             Contains a novel gene for a protein similar to
             Oncorhynchus mykiss VHSV-induced protein and a CpG island,
             complete sequence
          Length = 57981

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   taattaataggaataattgatt 205
             ||||||||||||||||||||||
Sbjct: 55044 taattaataggaataattgatt 55065
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>emb|BX510646.5| Zebrafish DNA sequence from clone CH211-221B16 in linkage group 9,
             complete sequence
          Length = 200321

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 184   taattaataggaataattgatt 205
             ||||||||||||||||||||||
Sbjct: 92513 taattaataggaataattgatt 92492
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>gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, complete sequence
          Length = 76171

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 185   aattaataggaataattgattt 206
             ||||||||||||||||||||||
Sbjct: 23685 aattaataggaataattgattt 23706
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>emb|AL713959.16| Zebrafish DNA sequence from clone XX-158F24 in linkage group 9,
             complete sequence
          Length = 26205

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   taattaataggaataattgatt 205
             ||||||||||||||||||||||
Sbjct: 23268 taattaataggaataattgatt 23289
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>gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, complete sequence
          Length = 172345

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   aactaagaaaatactagtata 133
             |||||||||||||||||||||
Sbjct: 10087 aactaagaaaatactagtata 10067
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>emb|BX294660.18| Zebrafish DNA sequence from clone CH211-234D4 in linkage group 23,
              complete sequence
          Length = 200676

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 220    ttgtttattttcaaaacacac 240
              |||||||||||||||||||||
Sbjct: 160000 ttgtttattttcaaaacacac 160020
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>gb|AC013549.9| Homo sapiens chromosome 11, clone RP11-47J17, complete sequence
          Length = 163180

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 113 aactaagaaaatactagtata 133
           |||||||||||||||||||||
Sbjct: 882 aactaagaaaatactagtata 902
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>emb|BX465183.9| Zebrafish DNA sequence from clone CH211-250A23 in linkage group 21,
              complete sequence
          Length = 119419

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 376    aatgtaatgctacactgtaaa 396
              |||||||||||||||||||||
Sbjct: 108879 aatgtaatgctacactgtaaa 108859
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>emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 in linkage group 1,
              complete sequence
          Length = 163978

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    ttgtttattttcaaaacacac 240
              |||||||||||||||||||||
Sbjct: 162519 ttgtttattttcaaaacacac 162499
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>emb|BX511003.9| Zebrafish DNA sequence from clone CH211-69F16 in linkage group 1,
             complete sequence
          Length = 151271

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   ttgtttattttcaaaacacac 240
             |||||||||||||||||||||
Sbjct: 24913 ttgtttattttcaaaacacac 24893
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>emb|BX855591.11| Zebrafish DNA sequence from clone DKEY-237H21 in linkage group 1,
           complete sequence
          Length = 131858

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 220 ttgtttattttcaaaacacac 240
           |||||||||||||||||||||
Sbjct: 541 ttgtttattttcaaaacacac 521
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>emb|BX649374.3| Sminthopsis DNA sequence from clone RZPD668-106P8, complete sequence
          Length = 112071

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 213   ttaaaccttgtttattttcaaaaca 237
             ||||||||| |||||||||||||||
Sbjct: 63544 ttaaaccttttttattttcaaaaca 63520
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>emb|BX470181.7| Zebrafish DNA sequence from clone CH211-91P22 in linkage group 18,
              complete sequence
          Length = 186084

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 377    atgtaatgctacactgtaaaa 397
              |||||||||||||||||||||
Sbjct: 133587 atgtaatgctacactgtaaaa 133607
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>emb|CR925755.8| Zebrafish DNA sequence from clone CH211-138M24 in linkage group 17,
             complete sequence
          Length = 107536

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   ttgtttattttcaaaacacac 240
             |||||||||||||||||||||
Sbjct: 80500 ttgtttattttcaaaacacac 80520
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>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence
          Length = 181148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gtttattttcaaaacacacg 241
             ||||||||||||||||||||
Sbjct: 83399 gtttattttcaaaacacacg 83380
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>gb|AC131577.16| Mus musculus chromosome 1, clone RP23-23I4, complete sequence
          Length = 234224

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 170    agtagtactagtactaattaatag 193
              ||||||| ||||||||||||||||
Sbjct: 167159 agtagtagtagtactaattaatag 167182
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>gb|AC109139.15| Mus musculus chromosome 8, clone RP23-47L13, complete sequence
          Length = 268904

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 442    caaaagataaaaatgcatgtttca 465
              |||||||||||||| |||||||||
Sbjct: 185661 caaaagataaaaatccatgtttca 185684
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>gb|AC091465.7| Mus musculus chromosome 1, clone RP23-221K1, complete sequence
          Length = 199109

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   agtagtactagtactaattaatag 193
             ||||||| ||||||||||||||||
Sbjct: 42180 agtagtagtagtactaattaatag 42203
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>gb|AC116996.3| Mus musculus BAC clone RP23-6B22 from 15, complete sequence
          Length = 229669

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   ttccagcttcttcaaccctt 518
             ||||||||||||||||||||
Sbjct: 24883 ttccagcttcttcaaccctt 24864
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>gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, complete sequence
          Length = 182372

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 221   tgtttattttcaaaacacacgcaa 244
             |||||||||||||||| |||||||
Sbjct: 28190 tgtttattttcaaaactcacgcaa 28167
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>emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, complete sequence
          Length = 177966

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    taacctcaattcatttattcaccc 309
              ||||||||||||||||| ||||||
Sbjct: 163090 taacctcaattcatttactcaccc 163067
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>ref|XM_962569.1| PREDICTED: Tribolium castaneum similar to CG12238-PA (LOC656013),
            mRNA
          Length = 4938

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  ccttgtttattttcaaaaca 237
            ||||||||||||||||||||
Sbjct: 3097 ccttgtttattttcaaaaca 3078
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>emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in linkage group 13,
              complete sequence
          Length = 172918

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    cttaaaccttgtttattttc 231
              ||||||||||||||||||||
Sbjct: 141614 cttaaaccttgtttattttc 141633
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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete
              sequence
          Length = 226730

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    taatgctacactgtaaaaca 399
              ||||||||||||||||||||
Sbjct: 212375 taatgctacactgtaaaaca 212356
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>ref|NM_132520.2| Drosophila melanogaster Karl CG4139-RB, transcript variant B (Karl),
            mRNA
          Length = 1417

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtttattttcaaaacacacg 241
            ||||||||||||||||||||
Sbjct: 1151 gtttattttcaaaacacacg 1132
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>gb|AY038185.1| Drosophila melanogaster Karl mRNA, complete cds
          Length = 1444

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtttattttcaaaacacacg 241
            ||||||||||||||||||||
Sbjct: 1150 gtttattttcaaaacacacg 1131
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>gb|AC004470.2| Homo sapiens X BAC GS1-433O24 (Genome Systems Human BAC Library)
             complete sequence
          Length = 206809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   cttaaaccttgtttattttc 231
             ||||||||||||||||||||
Sbjct: 72275 cttaaaccttgtttattttc 72294
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>gb|AC084599.1|CBRG42P09 Caenorhabditis briggsae cosmid G42P09, complete sequence
          Length = 44251

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 346  caacatgatccttcgaaatctaaa 369
            ||||| ||||||||||||||||||
Sbjct: 2140 caacaagatccttcgaaatctaaa 2117
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>gb|AC125005.15| Mus musculus chromosome 5, clone RP23-370D2, complete sequence
          Length = 176900

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    aatgcatgtttcatggaaat 472
              ||||||||||||||||||||
Sbjct: 148745 aatgcatgtttcatggaaat 148764
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>dbj|BS000026.1| Pan troglodytes chromosome 22 clone:RP43-035C07, map 22, complete
            sequences
          Length = 20681

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 371  ccaggaatg-taatgctacactgtaaaacaga 401
            ||||||||| |||||||||||||||| |||||
Sbjct: 2257 ccaggaatgataatgctacactgtaacacaga 2288
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>dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, map 22, complete
              sequences
          Length = 144566

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 371    ccaggaatg-taatgctacactgtaaaacaga 401
              ||||||||| |||||||||||||||| |||||
Sbjct: 143920 ccaggaatgataatgctacactgtaacacaga 143951
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>emb|CR759908.11| Zebrafish DNA sequence from clone DKEYP-38F5 in linkage group 20,
             complete sequence
          Length = 164351

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 375   gaatgtaatgctacactgtaaaac 398
             |||||||| |||||||||||||||
Sbjct: 51592 gaatgtaaagctacactgtaaaac 51615
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>emb|BX936317.16| Zebrafish DNA sequence from clone CH211-208C9 in linkage group 20,
              complete sequence
          Length = 208051

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    tgtaatgctacactgtaaaa 397
              ||||||||||||||||||||
Sbjct: 124180 tgtaatgctacactgtaaaa 124161
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>emb|AL929208.9| Zebrafish DNA sequence from clone DKEY-56P7 in linkage group 7, complete
              sequence
          Length = 189608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    tgtaatgctacactgtaaaa 397
              ||||||||||||||||||||
Sbjct: 132370 tgtaatgctacactgtaaaa 132389
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>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
             sequence
          Length = 308317

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gtttattttcaaaacacacg 241
             ||||||||||||||||||||
Sbjct: 83102 gtttattttcaaaacacacg 83083
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>dbj|AP001667.1| Homo sapiens genomic DNA, chromosome 21q, section 11/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 371   ccaggaatg-taatgctacactgtaaaacaga 401
             ||||||||| |||||||||||||||| |||||
Sbjct: 37690 ccaggaatgataatgctacactgtaacacaga 37721
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>emb|CR555302.7| Zebrafish DNA sequence from clone CH211-212C19 in linkage group 10,
              complete sequence
          Length = 202469

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    aatgtaatgctacactgtaaaaca 399
              |||||| |||||||||||||||||
Sbjct: 160678 aatgtattgctacactgtaaaaca 160655
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>gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, complete sequence
          Length = 208136

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    aatgcatgtttcatggaaat 472
              ||||||||||||||||||||
Sbjct: 137529 aatgcatgtttcatggaaat 137510



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   aatgcatgtttcatggaaat 472
             ||||||||||||||||||||
Sbjct: 89987 aatgcatgtttcatggaaat 89968



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  aatgcatgtttcatggaaat 472
            ||||||||||||||||||||
Sbjct: 2953 aatgcatgtttcatggaaat 2972
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>emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 in linkage group 5,
             complete sequence
          Length = 124886

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tgtttattttcaaaacacac 240
             ||||||||||||||||||||
Sbjct: 41804 tgtttattttcaaaacacac 41785
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>emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, complete sequence
          Length = 187939

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   aatgtaatgctacactgtaaaaca 399
             |||||| |||||||||||||||||
Sbjct: 65415 aatgtattgctacactgtaaaaca 65392
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>gb|CP000166.1| Drosophila melanogaster genomic scaffold 211000022278912
          Length = 97193

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   gtttattttcaaaacacacg 241
             ||||||||||||||||||||
Sbjct: 44370 gtttattttcaaaacacacg 44389
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>gb|U52952.1|DMU52952 Drosophila melanogaster CKII beta subunit (CKII-beta1) gene,
           complete cds
          Length = 6009

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 gtttattttcaaaacacacg 241
           ||||||||||||||||||||
Sbjct: 896 gtttattttcaaaacacacg 877
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>gb|AC140299.2| Mus musculus BAC clone RP23-363J15 from 10, complete sequence
          Length = 201657

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tcaattcatttattcacccg 310
             ||||||||||||||||||||
Sbjct: 20783 tcaattcatttattcacccg 20764
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>gb|AC160934.2| Mus musculus BAC clone RP23-435H22 from chromosome 15, complete sequence
          Length = 183147

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    ttccagcttcttcaaccctt 518
              ||||||||||||||||||||
Sbjct: 113963 ttccagcttcttcaaccctt 113982
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>gb|M61157.1|DROEAG D.melanogaster putative potassium channel protein (eag) mRNA,
           complete cds
          Length = 4061

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 353 atccttcgaaatctaaagccagga 376
           ||||||||||||| ||||||||||
Sbjct: 157 atccttcgaaatcaaaagccagga 180
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>dbj|AP001172.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B812E1, LL56-APP
              region, complete sequence
          Length = 149114

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 371    ccaggaatg-taatgctacactgtaaaacaga 401
              ||||||||| |||||||||||||||| |||||
Sbjct: 117770 ccaggaatgataatgctacactgtaacacaga 117801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,353,238
Number of Sequences: 3902068
Number of extensions: 5353238
Number of successful extensions: 132050
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 131873
Number of HSP's gapped (non-prelim): 181
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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