ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 42 1.1
2gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 42 1.1
3emb|CR730486.2|CNS0GQL7 Tetraodon nigroviridis full-length cDNA 40 4.5
4gb|AC073968.8| Homo sapiens BAC clone RP11-111G20 from 7, comple... 40 4.5
5emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in... 40 4.5
6emb|BX005423.9| Zebrafish DNA sequence from clone DKEY-243E1 in ... 40 4.5

>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 219     gatcatccatgcaaggacaccgtgg 243
               ||||||||||||||||||| |||||
Sbjct: 1266691 gatcatccatgcaaggacatcgtgg 1266667



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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 219     gatcatccatgcaaggacaccgtgg 243
               ||||||||||||||||||| |||||
Sbjct: 1260729 gatcatccatgcaaggacatcgtgg 1260705



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>emb|CR730486.2|CNS0GQL7 Tetraodon nigroviridis full-length cDNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 16  gatgctctacatttctgcctccaa 39
           ||||||| ||||||||||||||||
Sbjct: 742 gatgctccacatttctgcctccaa 719



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>gb|AC073968.8| Homo sapiens BAC clone RP11-111G20 from 7, complete sequence
          Length = 92245

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   aaagaactgcaattcttgtg 160
             ||||||||||||||||||||
Sbjct: 68196 aaagaactgcaattcttgtg 68215



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>emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in linkage group 17,
             complete sequence
          Length = 152463

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   atcattggttttgaacttat 204
             ||||||||||||||||||||
Sbjct: 18197 atcattggttttgaacttat 18216



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>emb|BX005423.9| Zebrafish DNA sequence from clone DKEY-243E1 in linkage group 8,
             complete sequence
          Length = 68421

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   acaatcactatgatcatcca 227
             ||||||||||||||||||||
Sbjct: 27483 acaatcactatgatcatcca 27502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,651,458
Number of Sequences: 3902068
Number of extensions: 2651458
Number of successful extensions: 43510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43501
Number of HSP's gapped (non-prelim): 9
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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