ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 1.1
2gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome... 40 1.1
3ref|XM_637430.1| Dictyostelium discoideum hypothetical protein (... 38 4.5
4gb|AC120413.20| Mus musculus chromosome 5, clone RP24-458L16, co... 38 4.5
5gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 38 4.5
6gb|AC114657.8| Mus musculus chromosome 5, clone RP24-161C20, com... 38 4.5
7gb|AC010976.6| Homo sapiens BAC clone RP11-286H15 from 2, comple... 38 4.5
8gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complet... 38 4.5
9gb|AC105950.11| Mus musculus chromosome 12, clone RP24-386J17, c... 38 4.5
10gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete sequence 38 4.5
11emb|AL691515.9| Human DNA sequence from clone RP11-316I3 on chro... 38 4.5
12emb|BX045788.1|CNS097HS Single read from an extremity of a full-... 38 4.5
13emb|AL670769.3| Mouse DNA sequence from clone RP23-375J5 on chro... 38 4.5
14gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, comp... 38 4.5
15gb|AC154575.2| Mus musculus BAC clone RP23-248E1 from chromosome... 38 4.5
16gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, com... 38 4.5
17gb|AC093523.3| Homo sapiens chromosome 5 clone RP11-181E7, compl... 38 4.5
18gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 38 4.5
19gb|AC012500.7| Homo sapiens BAC clone RP11-434M17 from 2, comple... 38 4.5
20gb|AC116919.2| Dictyostelium discoideum chromosome 2 map complem... 38 4.5
21emb|BX248418.16| Zebrafish DNA sequence from clone DKEY-181I3 in... 38 4.5
22gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 38 4.5
23emb|AL606929.13| Mouse DNA sequence from clone RP23-139J21 on ch... 38 4.5
24emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chr... 38 4.5

>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acaatacaacacaatatacc 20
              ||||||||||||||||||||
Sbjct: 942936 acaatacaacacaatatacc 942955



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>gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome 12, complete sequence
          Length = 184821

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     taacaacaacaacactttct 68
              ||||||||||||||||||||
Sbjct: 104019 taacaacaacaacactttct 104000



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>ref|XM_637430.1| Dictyostelium discoideum hypothetical protein (DDB0218010), partial
            mRNA
          Length = 5757

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 51   acaacaacaacactttctacaac 73
            ||||||||||||| |||||||||
Sbjct: 3519 acaacaacaacaccttctacaac 3541



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>gb|AC120413.20| Mus musculus chromosome 5, clone RP24-458L16, complete sequence
          Length = 163011

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 125722 aacaacaacaacactttct 125704



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>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    aacaacaacaacactttct 68
             |||||||||||||||||||
Sbjct: 66988 aacaacaacaacactttct 67006



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>gb|AC114657.8| Mus musculus chromosome 5, clone RP24-161C20, complete sequence
          Length = 161173

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 142149 aacaacaacaacactttct 142167



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>gb|AC010976.6| Homo sapiens BAC clone RP11-286H15 from 2, complete sequence
          Length = 204142

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 153341 aacaacaacaacactttct 153359



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>gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complete sequence
          Length = 223068

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    gctgggctttcctttctta 95
             |||||||||||||||||||
Sbjct: 77394 gctgggctttcctttctta 77412



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>gb|AC105950.11| Mus musculus chromosome 12, clone RP24-386J17, complete sequence
          Length = 192207

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    aacaacaacaacactttct 68
             |||||||||||||||||||
Sbjct: 55660 aacaacaacaacactttct 55678



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>gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete sequence
          Length = 40014

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    ataacaacaacaacacttt 66
             |||||||||||||||||||
Sbjct: 23070 ataacaacaacaacacttt 23052



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>emb|AL691515.9| Human DNA sequence from clone RP11-316I3 on chromosome 1 Contains two
              novel genes, complete sequence
          Length = 199421

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 50     aacaacaacaacactttctacaa 72
              |||||||||||||||||| ||||
Sbjct: 132783 aacaacaacaacactttccacaa 132805



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>emb|BX045788.1|CNS097HS Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC2AD09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 187

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 50  aacaacaacaacactttct 68
           |||||||||||||||||||
Sbjct: 111 aacaacaacaacactttct 93



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>emb|AL670769.3| Mouse DNA sequence from clone RP23-375J5 on chromosome 4 Contains two
             novel genes and a nudix (nucleoside diphosphate linked
             moiety X)-type motif (Nudt) pseudogene, complete sequence
          Length = 180238

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    gtatgggagcaagtacaga 42
             |||||||||||||||||||
Sbjct: 56945 gtatgggagcaagtacaga 56963



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>gb|AC011146.10| Homo sapiens chromosome 8, clone RP11-2F15, complete sequence
          Length = 156951

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 50     aacaacaacaacactttctacaa 72
              ||||||||||||| |||||||||
Sbjct: 122151 aacaacaacaacattttctacaa 122173



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>gb|AC154575.2| Mus musculus BAC clone RP23-248E1 from chromosome 14, complete sequence
          Length = 210912

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    ataacaacaacaacacttt 66
             |||||||||||||||||||
Sbjct: 64304 ataacaacaacaacacttt 64286



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>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 50    aacaacaacaacactttctacaa 72
             ||||||||||||| |||||||||
Sbjct: 28324 aacaacaacaacattttctacaa 28346



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>gb|AC093523.3| Homo sapiens chromosome 5 clone RP11-181E7, complete sequence
          Length = 156592

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    ataacaacaacaacacttt 66
             |||||||||||||||||||
Sbjct: 38278 ataacaacaacaacacttt 38296



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>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23,
              complete sequence
          Length = 176610

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 109623 aacaacaacaacactttct 109605



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>gb|AC012500.7| Homo sapiens BAC clone RP11-434M17 from 2, complete sequence
          Length = 117763

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aacaacaacaacactttct 68
             |||||||||||||||||||
Sbjct: 78671 aacaacaacaacactttct 78653



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>gb|AC116919.2| Dictyostelium discoideum chromosome 2 map complement(6245035-6206343)
            strain AX4, complete sequence
          Length = 38692

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 51   acaacaacaacactttctacaac 73
            ||||||||||||| |||||||||
Sbjct: 7083 acaacaacaacaccttctacaac 7105



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>emb|BX248418.16| Zebrafish DNA sequence from clone DKEY-181I3 in linkage group 20,
             complete sequence
          Length = 152757

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 42    acaagnataacaacaacaacac 63
             ||||| ||||||||||||||||
Sbjct: 27835 acaagcataacaacaacaacac 27814



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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
             sequence
          Length = 271507

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aacaacaacaacactttct 68
             |||||||||||||||||||
Sbjct: 49824 aacaacaacaacactttct 49806



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>emb|AL606929.13| Mouse DNA sequence from clone RP23-139J21 on chromosome 4, complete
              sequence
          Length = 198728

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 181206 aacaacaacaacactttct 181188



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>emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chromosome 2, complete
              sequence
          Length = 251814

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     aacaacaacaacactttct 68
              |||||||||||||||||||
Sbjct: 130302 aacaacaacaacactttct 130320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,834,072
Number of Sequences: 3902068
Number of extensions: 1834072
Number of successful extensions: 561101
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 560825
Number of HSP's gapped (non-prelim): 276
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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