ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191468.1| Oryza sativa (japonica cultivar-group), predic... 139 8e-30
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
3dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
4dbj|AK071643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
5dbj|AK060314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
6dbj|AK059025.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
9emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119... 109 7e-21
10dbj|AB066561.1| Oryza sativa ossap2 mRNA for secretory acid phos... 96 1e-16
11dbj|AK066273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
12dbj|AK058368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
13emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 46 0.092
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.092
15gb|AC132114.4| Mus musculus BAC clone RP24-112A6 from chromosome... 46 0.092
16gb|AC141646.4| Mus musculus BAC clone RP23-84E4 from chromosome ... 46 0.092
17gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.36
18dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.36
19gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.36
20ref|NM_183473.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
21gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.4
22gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.4
23gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.4
24emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.4
25emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 42 1.4
26dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
27dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
28dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
29dbj|AK121535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
30ref|XM_482324.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
31ref|XM_481229.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
32gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 5.7
33gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
34gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.7
35gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Canc... 40 5.7
36emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.7
37emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster fo... 40 5.7
38dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.7
39gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Ca... 40 5.7
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
42gb|AE009554.1| Brucella melitensis 16M chromosome I, section 111... 40 5.7
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
44gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 5.7
45emb|AL645926.16| Zebrafish DNA sequence from clone RP71-1G24, co... 40 5.7
46dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48tpe|BN000596.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 5.7
49emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 5.7 
>ref|NM_191468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1398

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 301  ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
            |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 1362 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 1303

                                                                        
Query: 361  gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
            |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 1302 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 1243

              
Query: 421  cg 422
            ||
Sbjct: 1242 cg 1241
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Plus

                                                                            
Query: 301      ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
                |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 32841916 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 32841975

                                                                            
Query: 361      gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
                |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 32841976 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 32842035

                  
Query: 421      cg 422
                ||
Sbjct: 32842036 cg 32842037



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 322    gagggcgtcggccgccacggcggcg 346
              |||||||||||| ||||||||||||
Sbjct: 282811 gagggcgtcggcggccacggcggcg 282835



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 322    gagggcgtcggccgccacggcggcg 346
              |||||||||||| ||||||||||||
Sbjct: 273781 gagggcgtcggcggccacggcggcg 273805
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>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Plus

                                                                         
Query: 301   ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
             |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 63321 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 63380

                                                                         
Query: 361   gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
             |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 63381 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 63440

               
Query: 421   cg 422
             ||
Sbjct: 63441 cg 63442
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>dbj|AK071643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105J09, full
            insert sequence
          Length = 2008

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 301  ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
            |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 1634 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 1575

                                                                        
Query: 361  gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
            |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 1574 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 1515

              
Query: 421  cg 422
            ||
Sbjct: 1514 cg 1513
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>dbj|AK060314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C12, full
           insert sequence
          Length = 1042

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                       
Query: 301 ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
           |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 675 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 616

                                                                       
Query: 361 gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
           |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 615 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 556

             
Query: 421 cg 422
           ||
Sbjct: 555 cg 554
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>dbj|AK059025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B09, full
            insert sequence
          Length = 1536

 Score =  139 bits (70), Expect = 8e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 301  ccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcg 360
            |||||| |||||||||||||| | || ||| |||||||| |||  |||||||||||||||
Sbjct: 1181 ccagtatctgttggtgaaccacatggagtcagccgccacagcgttgccgtcctggttgcg 1122

                                                                        
Query: 361  gtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
            |||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 1121 gtgccacgtgtagtacgcgtgcgtcctgttcttgatgtccaggatggcgtgcccgaagct 1062

              
Query: 421  cg 422
            ||
Sbjct: 1061 cg 1060
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                            
Query: 310      gttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcggtgccaggc 369
                |||||||||||||| ||||||||| || ||   ||||||||| | |||||||| ||||||
Sbjct: 27346380 gttggtgaaccagacggcgtcggcggcgaccttggcgccgtcgtcgttgcggtaccaggc 27346439

                                                                   
Query: 370      gtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
                |||||||||||||||||||||||||||||| || |  ||||| ||||||||
Sbjct: 27346440 gtagtaggcgtgcgtccggttcttgatgtccagcaccgcgtggccgaagct 27346490



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                            
Query: 293      gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
                |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 27340453 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 27340512

                                                                            
Query: 353      tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
                |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 27340513 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 27340572

                        
Query: 413      ccgaagct 420
                ||||||||
Sbjct: 27340573 ccgaagct 27340580



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 355      gttgcggtgccaggcgtagtaggcgtgcgtccggtt 390
                ||||||||||||  ||||| ||||||||||||||||
Sbjct: 27337510 gttgcggtgccactcgtagaaggcgtgcgtccggtt 27337545
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                            
Query: 310      gttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcggtgccaggc 369
                |||||||||||||| ||||||||| || ||   ||||||||| | |||||||| ||||||
Sbjct: 27271980 gttggtgaaccagacggcgtcggcggcgaccttggcgccgtcgtcgttgcggtaccaggc 27272039

                                                                   
Query: 370      gtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
                |||||||||||||||||||||||||||||| || |  ||||| ||||||||
Sbjct: 27272040 gtagtaggcgtgcgtccggttcttgatgtccagcaccgcgtggccgaagct 27272090



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                            
Query: 293      gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
                |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 27266053 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 27266112

                                                                            
Query: 353      tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
                |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 27266113 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 27266172

                        
Query: 413      ccgaagct 420
                ||||||||
Sbjct: 27266173 ccgaagct 27266180



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 355      gttgcggtgccaggcgtagtaggcgtgcgtccggtt 390
                ||||||||||||  ||||| ||||||||||||||||
Sbjct: 27263110 gttgcggtgccactcgtagaaggcgtgcgtccggtt 27263145
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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score =  109 bits (55), Expect = 7e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                         
Query: 310   gttggtgaaccagagggcgtcggccgccacggcggcgccgtcctggttgcggtgccaggc 369
             |||||||||||||| ||||||||| || ||   ||||||||| | |||||||| ||||||
Sbjct: 14700 gttggtgaaccagacggcgtcggcggcgaccttggcgccgtcgtcgttgcggtaccaggc 14759

                                                                
Query: 370   gtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgcccgaagct 420
             |||||||||||||||||||||||||||||| || |  ||||| ||||||||
Sbjct: 14760 gtagtaggcgtgcgtccggttcttgatgtccagcaccgcgtggccgaagct 14810



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Plus

                                                                        
Query: 293  gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
            |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 8773 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 8832

                                                                        
Query: 353  tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
            |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 8833 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 8892

                    
Query: 413  ccgaagct 420
            ||||||||
Sbjct: 8893 ccgaagct 8900



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 355  gttgcggtgccaggcgtagtaggcgtgcgtccggtt 390
            ||||||||||||  ||||| ||||||||||||||||
Sbjct: 5830 gttgcggtgccactcgtagaaggcgtgcgtccggtt 5865
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>dbj|AB066561.1| Oryza sativa ossap2 mRNA for secretory acid phosphatase precursor,
            complete cds
          Length = 1836

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
            |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 1406 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 1347

                                                                        
Query: 353  tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
            |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 1346 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 1287

                    
Query: 413  ccgaagct 420
            ||||||||
Sbjct: 1286 ccgaagct 1279
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>dbj|AK066273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061L15, full
            insert sequence
          Length = 1853

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
            |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 1427 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 1368

                                                                        
Query: 353  tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
            |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 1367 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 1308

                    
Query: 413  ccgaagct 420
            ||||||||
Sbjct: 1307 ccgaagct 1300
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>dbj|AK058368.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G03, full
            insert sequence
          Length = 1475

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  gtgggcatccagtacctgttggtgaaccagagggcgtcggccgccacggcggcgccgtcc 352
            |||||||||||||| | |||||||| ||||| |||||||||  |  |   ||||||||| 
Sbjct: 1426 gtgggcatccagtagcggttggtgagccagacggcgtcggcgacggccttggcgccgtcg 1367

                                                                        
Query: 353  tggttgcggtgccaggcgtagtaggcgtgcgtccggttcttgatgtcgaggatggcgtgc 412
            |||||||||||||| |||||||  |||||||||||||||||||| || ||  ||||||| 
Sbjct: 1366 tggttgcggtgccacgcgtagtgcgcgtgcgtccggttcttgatctccagcgtggcgtgg 1307

                    
Query: 413  ccgaagct 420
            ||||||||
Sbjct: 1306 ccgaagct 1299
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>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
             sequence
          Length = 207434

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 71252 ccgccacggcggcgccgtcctgg 71274



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 66857 ccgccacggcggcgccgtcctgg 66879



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 62462 ccgccacggcggcgccgtcctgg 62484



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 58067 ccgccacggcggcgccgtcctgg 58089



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 53672 ccgccacggcggcgccgtcctgg 53694



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 49277 ccgccacggcggcgccgtcctgg 49299



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 44882 ccgccacggcggcgccgtcctgg 44904



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 40487 ccgccacggcggcgccgtcctgg 40509



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 36092 ccgccacggcggcgccgtcctgg 36114



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 31697 ccgccacggcggcgccgtcctgg 31719



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 27302 ccgccacggcggcgccgtcctgg 27324



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 22907 ccgccacggcggcgccgtcctgg 22929



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 333   ccgccacggcggcgccgtcctgg 355
             |||||||||||||||||||||||
Sbjct: 18505 ccgccacggcggcgccgtcctgg 18527
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 332     gccgccacggcggcgccgtcctg 354
               |||||||||||||||||||||||
Sbjct: 1368861 gccgccacggcggcgccgtcctg 1368839
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>gb|AC132114.4| Mus musculus BAC clone RP24-112A6 from chromosome 9, complete sequence
          Length = 192639

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 137    ctgctctctacacacagttttggggta 163
              ||||||||||| |||||||||||||||
Sbjct: 135113 ctgctctctactcacagttttggggta 135139
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>gb|AC141646.4| Mus musculus BAC clone RP23-84E4 from chromosome 9, complete sequence
          Length = 193235

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 137   ctgctctctacacacagttttggggta 163
             ||||||||||| |||||||||||||||
Sbjct: 56508 ctgctctctactcacagttttggggta 56534
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 294     tgggcatccagtacctgttggt 315
               ||||||||||||||||||||||
Sbjct: 6003801 tgggcatccagtacctgttggt 6003780
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 391     cttgatgtcgaggatggcgtgc 412
               ||||||||||||||||||||||
Sbjct: 7170732 cttgatgtcgaggatggcgtgc 7170753



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 390     tcttgatgtcgaggatggcg 409
               ||||||||||||||||||||
Sbjct: 8942148 tcttgatgtcgaggatggcg 8942129
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 325     ggcgtcggccgccacggcggcgccgt 350
               ||||||||||||||| ||||||||||
Sbjct: 2700199 ggcgtcggccgccaccgcggcgccgt 2700224
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>ref|NM_183473.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 322 gagggcgtcggccgccacggcggcg 346
           |||||||||||| ||||||||||||
Sbjct: 305 gagggcgtcggcggccacggcggcg 281
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 328     gtcggccgccacggcggcgcc 348
               |||||||||||||||||||||
Sbjct: 2969807 gtcggccgccacggcggcgcc 2969827
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    cgtcggccgccacggcggcgc 347
              |||||||||||||||||||||
Sbjct: 346088 cgtcggccgccacggcggcgc 346108
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 327     cgtcggccgccacggcggcgc 347
               |||||||||||||||||||||
Sbjct: 1076633 cgtcggccgccacggcggcgc 1076653
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    cgtcggccgccacggcggcgc 347
              |||||||||||||||||||||
Sbjct: 957625 cgtcggccgccacggcggcgc 957645
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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 323    agggcgtcggccgccacggcggcgc 347
              |||||||||||||| ||||||||||
Sbjct: 134541 agggcgtcggccgcgacggcggcgc 134517
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  ggcgtcggccgccacggcggc 345
            |||||||||||||||||||||
Sbjct: 5106 ggcgtcggccgccacggcggc 5086
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0005A05
          Length = 190834

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 322   gagggcgtcggccgccacggcggcg 346
             |||||||||||| ||||||||||||
Sbjct: 34649 gagggcgtcggcggccacggcggcg 34673



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 322   gagggcgtcggccgccacggcggcg 346
             |||||||||||| ||||||||||||
Sbjct: 25619 gagggcgtcggcggccacggcggcg 25643
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0436E04
          Length = 144644

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 322    gagggcgtcggccgccacggcggcg 346
              |||||||||||| ||||||||||||
Sbjct: 124481 gagggcgtcggcggccacggcggcg 124505



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 322    gagggcgtcggccgccacggcggcg 346
              |||||||||||| ||||||||||||
Sbjct: 115451 gagggcgtcggcggccacggcggcg 115475
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>dbj|AK121535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031D14, full
           insert sequence
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 322 gagggcgtcggccgccacggcggcg 346
           |||||||||||| ||||||||||||
Sbjct: 305 gagggcgtcggcggccacggcggcg 281
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>ref|XM_482324.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 cggccgccacggcggcgccg 349
           ||||||||||||||||||||
Sbjct: 396 cggccgccacggcggcgccg 377
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>ref|XM_481229.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 cggccgccacggcggcgccg 349
           ||||||||||||||||||||
Sbjct: 433 cggccgccacggcggcgccg 414
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 385    ccggttcttgatgtcgaggatggc 408
              |||||||||||||||||| |||||
Sbjct: 796194 ccggttcttgatgtcgagaatggc 796171
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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
             complete sequence
          Length = 151399

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   cgccacggcggcgccgtcct 353
             ||||||||||||||||||||
Sbjct: 78444 cgccacggcggcgccgtcct 78425
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 332     gccgccacggcggcgccgtc 351
               ||||||||||||||||||||
Sbjct: 3509978 gccgccacggcggcgccgtc 3509997
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>gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 215077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   acacagttttggggtacaga 167
             ||||||||||||||||||||
Sbjct: 75451 acacagttttggggtacaga 75470
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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   tcttgatgtcgaggatggcg 409
             ||||||||||||||||||||
Sbjct: 39218 tcttgatgtcgaggatggcg 39237
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>emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster for borrelidin biosynthesis
          Length = 74787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   ggcgtcggccgccacggcgg 344
             ||||||||||||||||||||
Sbjct: 26775 ggcgtcggccgccacggcgg 26794
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    tggggtacagattgagcggc 176
              ||||||||||||||||||||
Sbjct: 580649 tggggtacagattgagcggc 580668
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>gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165414

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    gtgggcatccagtacctgtt 312
              ||||||||||||||||||||
Sbjct: 121130 gtgggcatccagtacctgtt 121111
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 330      cggccgccacggcggcgccg 349
                ||||||||||||||||||||
Sbjct: 19449591 cggccgccacggcggcgccg 19449572



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 330      cggccgccacggcggcgccg 349
                ||||||||||||||||||||
Sbjct: 10775631 cggccgccacggcggcgccg 10775650
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 334     cgccacggcggcgccgtcct 353
               ||||||||||||||||||||
Sbjct: 1985567 cgccacggcggcgccgtcct 1985548
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>gb|AE009554.1| Brucella melitensis 16M chromosome I, section 111 of 195 of the
            complete sequence
          Length = 11477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  ccggttcttgatgtcgaggatggc 408
            |||||||||||||||||| |||||
Sbjct: 1790 ccggttcttgatgtcgagaatggc 1813
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 327     cgtcggccgccacggcggcg 346
               ||||||||||||||||||||
Sbjct: 5331799 cgtcggccgccacggcggcg 5331818
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 385    ccggttcttgatgtcgaggatggc 408
              |||||||||||||||||| |||||
Sbjct: 817874 ccggttcttgatgtcgagaatggc 817851
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>emb|AL645926.16| Zebrafish DNA sequence from clone RP71-1G24, complete sequence
          Length = 141213

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   cttctgctctctacacacag 153
             ||||||||||||||||||||
Sbjct: 25801 cttctgctctctacacacag 25782
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>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091M20
          Length = 132976

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   cggccgccacggcggcgccg 349
             ||||||||||||||||||||
Sbjct: 72763 cggccgccacggcggcgccg 72782
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>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0453D01
          Length = 147461

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   cggccgccacggcggcgccg 349
             ||||||||||||||||||||
Sbjct: 44348 cggccgccacggcggcgccg 44329
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>tpe|BN000596.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx67 gene for
           class III peroxidase 67 precursor, exons 1-2
          Length = 1187

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 cgccacggcggcgccgtcct 353
           ||||||||||||||||||||
Sbjct: 902 cgccacggcggcgccgtcct 883
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 385    ccggttcttgatgtcgaggatggc 408
              |||||||||||||||||| |||||
Sbjct: 814152 ccggttcttgatgtcgagaatggc 814129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,376,964
Number of Sequences: 3902068
Number of extensions: 2376964
Number of successful extensions: 44956
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44060
Number of HSP's gapped (non-prelim): 896
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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