ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26n15 |
|---|---|
| Clone Library Name | barley_pub |
>GDF1_MOUSE (P20863) Embryonic growth/differentiation factor 1 precursor| (GDF-1) Length = 357 Score = 31.2 bits (69), Expect = 1.1 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = +2 Query: 107 ACGDAEAPSLLFLGASIFSCPLGRLRR*AEPYGESQRTHGPCSGRKRHI 253 ACG SLL + CPL RLRR EP E G C R+ H+ Sbjct: 211 ACGRLAEASLLLVTLDPRLCPLPRLRRHTEPRVEVGPV-GTCRTRRLHV 258
>TPMT_LEGPL (Q5WSX9) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 221 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 222 CVRWLSPYGSAHLRNLPRGQEKMEAP 145 C++WL P GS L+ L QEK++ P Sbjct: 143 CLKWLKPGGSILLKTLQYNQEKVQGP 168
>TPMT_LEGPH (Q5ZRP5) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 221 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 222 CVRWLSPYGSAHLRNLPRGQEKMEAP 145 C++WL P GS L+ L QEK++ P Sbjct: 143 CLKWLKPGGSILLKTLQYNQEKVQGP 168
>TPMT_LEGPA (Q5X154) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 221 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 222 CVRWLSPYGSAHLRNLPRGQEKMEAP 145 C++WL P GS L+ L QEK++ P Sbjct: 143 CLKWLKPGGSILLKTLQYNQEKVQGP 168
>GRP1_CAEEL (P34512) GTP exchange factor for ARFs 1| Length = 393 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = -2 Query: 245 ACGLSRDHACAGSHHMALLICAICQGDKRKWRHRGKGAMVPLRHHMHRP 99 AC +D H ICA+ D R W + M P +H + RP Sbjct: 341 ACKTEQDGRLVEGRHSIYKICAVNDEDMRSWINAISRMMAPQQHLLARP 389
>LRC56_HUMAN (Q8IYG6) Leucine-rich repeat-containing protein 56| Length = 542 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -2 Query: 227 DHACAGSHHMALLICAICQGDKRKWRHRGKGAMVPLRHHMHRPGRPAASTMVNR*RPPLS 48 D+ + +H ++C R+ RH+ + P + HRPG PAAST P S Sbjct: 317 DNTSSLTHGAGQVLCGNPTKGLRERRHQCQAREPPEQLPQHRPGDPAASTSTPEPDPADS 376 Query: 47 ---LAFAG 33 LA AG Sbjct: 377 SDFLALAG 384
>PRTT_SERMA (P29805) Extracellular serine protease precursor (EC 3.4.21.-)| Length = 1045 Score = 28.9 bits (63), Expect = 5.3 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%) Frame = +1 Query: 220 AWSLLRPQAAYSS--ENATGVS*GLFG---------FFTHRVSLCLNFTRTSLLKGLKSE 366 AW+ L ++S +NATG +G F R+ + +TRTSL+ GL+S Sbjct: 776 AWAKLLGNWGHASGNDNATGYQTSTYGVLLGLDSELFDDGRLGVMTGYTRTSLVGGLQSV 835 Query: 367 PRSSRSSVAGLHDTRKHG 420 S + + GL+ ++ G Sbjct: 836 VHSDTTHL-GLYGDKRFG 852
>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)| (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24 (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 605 Score = 28.9 bits (63), Expect = 5.3 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Frame = -1 Query: 237 PEQGPCVRWLSPYGSAHLRN--LPRGQEKMEAPRKRSDGASASPHAPTRQASS*H 79 P+QGPC PYG ++ +PR P A A P P QA H Sbjct: 473 PQQGPCYTHSGPYGFQPHQSYEVPRYVPHPPPPPTSHQAAQAQPPPPGTQAPEAH 527
>MMP20_BOVIN (O18767) Matrix metalloproteinase-20 precursor (EC 3.4.24.-)| (MMP-20) (Enamel metalloproteinase) (Enamelysin) Length = 481 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -1 Query: 225 PCVRWLSPYGSAHLRNLPRGQEKMEAPRKRSDGASASPHAPTRQAS 88 P ++ +PYG ++ +G + + PR+ G +PH P S Sbjct: 244 PTYKYQNPYGFRLPKDDVKGIQALYGPRRAFSGKPTAPHGPPHNPS 289
>MMP20_HUMAN (O60882) Matrix metalloproteinase-20 precursor (EC 3.4.24.-)| (MMP-20) (Enamel metalloproteinase) (Enamelysin) Length = 483 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = -1 Query: 225 PCVRWLSPYGSAHLRNLPRGQEKMEAPRKRSDGASASPHAPTRQASS*HNGKQVKASFIV 46 P ++ +PYG ++ +G + + PRK G PHAP + S I Sbjct: 246 PTYKYKNPYGFHLPKDDVKGIQALYGPRKVFLGKPTLPHAPHHKPS------------IP 293 Query: 45 GLCXSCSCF 19 LC S S F Sbjct: 294 DLCDSSSSF 302
>ORYC_ORYSA (P25778) Oryzain gamma chain precursor (EC 3.4.22.-)| Length = 362 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/67 (26%), Positives = 28/67 (41%) Frame = +3 Query: 75 HCASCWPAGSVHVVTQRHHRXXXXXXXXXXXXXADCADEQSHMVRASARMVPAQAASGIF 254 HC SCWP + + R+ + ADCA ++ + +P+QA I Sbjct: 165 HCGSCWPFSTTGSLEARYTQATGPPVSLSEQQLADCATRYNNF--GCSGGLPSQAFEYI- 221 Query: 255 F*KCDGG 275 K +GG Sbjct: 222 --KYNGG 226
>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2300 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/39 (30%), Positives = 17/39 (43%) Frame = -1 Query: 345 QGSPGEVQTETHSVSEESKQSSTHPXXXXXXXXXXRPEQ 229 Q P QT +HS+S+ + QS + P P Q Sbjct: 96 QSQPSHTQTRSHSLSQATLQSCSQPQLSLNSQQSQSPSQ 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,453,098 Number of Sequences: 219361 Number of extensions: 1316456 Number of successful extensions: 3198 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3197 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
