ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27c15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 5e-81
2ref|NM_187359.1| Oryza sativa (japonica cultivar-group), mRNA 297 2e-77
3gb|AY103845.1| Zea mays PCO078224 mRNA sequence 262 1e-66
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
5dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
6gb|AY553366.1| Elaeis oleifera small-protein-like mRNA, partial ... 129 1e-26
7gb|BT013317.1| Lycopersicon esculentum clone 135002R, mRNA sequence 68 3e-08
8emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j2... 66 1e-07
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
10gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 62 2e-06
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12ref|NM_130025.2| Arabidopsis thaliana RAB6; GTP binding AT2G4461... 60 8e-06
13emb|BX820541.1|CNS0AACV Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
14emb|BX820517.1|CNS0A9YT Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
15gb|AY087904.1| Arabidopsis thaliana clone 39499 mRNA, complete s... 60 8e-06
16gb|L26984.1|ATHGTPBP Arabidopsis thaliana GTP-binding protein mRNA 60 8e-06
17ref|NM_120152.1| Arabidopsis thaliana GTP binding AT4G39890 mRNA... 56 1e-04
18gb|BT000043.1| Arabidopsis thaliana small GTP-binding protein-li... 56 1e-04
19gb|AF386952.1|AF386952 Arabidopsis thaliana small GTP-binding pr... 56 1e-04
20gb|AF325109.1|AF325109 Arabidopsis thaliana small GTP-binding pr... 56 1e-04
21ref|NM_121064.2| Arabidopsis thaliana GTP binding AT5G10260 mRNA... 54 5e-04
22gb|BT024829.1| Arabidopsis thaliana At5g10260 gene, complete cds 54 5e-04
23emb|BX833042.1|CNS09Z30 Arabidopsis thaliana Full-length cDNA Co... 54 5e-04
24gb|BT020541.1| Arabidopsis thaliana At5g10260 gene, complete cds 54 5e-04
25ref|NM_001032726.1| Homo sapiens RAB41, member RAS oncogene fami... 48 0.031
26emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chr... 48 0.031
27gb|L29273.1|TOBNTRAF Nicotiana tabacum SR1 Nt-rab6 mRNA, complet... 48 0.031
28ref|NM_125898.1| Arabidopsis thaliana GTP binding AT5G64990 mRNA... 46 0.12
29emb|AJ278660.1|ANI278660 Aspergillus niger partial mRNA for SrgC... 46 0.12
30dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.48
31ref|XM_417254.1| PREDICTED: Gallus gallus similar to RAB6A, memb... 42 1.9
32gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, com... 42 1.9
33ref|NM_026666.1| Mus musculus ubinuclein 1 (Ubn1), mRNA 42 1.9
34gb|DQ470138.1| Gallus gallus GTP-binding protein (Rab6) mRNA, co... 42 1.9
35gb|BC060723.1| Mus musculus ubinuclein 1, mRNA (cDNA clone IMAGE... 42 1.9
36gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome... 42 1.9
37gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosom... 42 1.9
38gb|AC024168.5| Homo sapiens chromosome 3 clone RP11-622P3 map 3p... 42 1.9
39gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p... 42 1.9
40gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 42 1.9
41gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, com... 42 1.9
42gb|BC098372.1| Mus musculus ubinuclein 1, mRNA (cDNA clone MGC:1... 42 1.9
43emb|Z99765.1|FPZ99765 Flaveria pringlei gdcsH gene 42 1.9
44emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, B... 42 1.9
45dbj|AK147571.1| Mus musculus 14 days pregnant adult female place... 42 1.9
46gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequ... 42 1.9
47emb|CR390639.1| Gallus gallus finished cDNA, clone ChEST98e10 42 1.9
48dbj|AK084046.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 1.9
49ref|XM_392533.2| PREDICTED: Apis mellifera similar to ENSANGP000... 42 1.9
50gb|AF540409.1| Meleagris gallopavo microsatellite MNT-106 mRNA s... 42 1.9
51gb|AC105036.14| Homo sapiens chromosome 15, clone CTD-2323K18, c... 42 1.9
52emb|AL512885.4| Human DNA sequence from clone RP11-183N22 on chr... 42 1.9
53gb|AC131718.5| Mus musculus BAC clone RP23-171B16 from 6, comple... 42 1.9
54gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 42 1.9
55emb|CT033198.1| Platynereis dumerilii EST IB0AAA25AA10EM1 42 1.9
56emb|CT032304.1| Platynereis dumerilii EST IB0AAA41AE10EM1 42 1.9
57gb|AC128625.4| Rattus norvegicus 1 BAC CH230-300K22 (Children's ... 40 7.5
58ref|XM_420156.1| PREDICTED: Gallus gallus similar to cone arrest... 40 7.5
59gb|AE004203.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 7.5
60emb|AL589674.9| Human DNA sequence from clone RP11-137J7 on chro... 40 7.5
61emb|AL356430.19| Human DNA sequence from clone RP11-467B13 on ch... 40 7.5
62emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chr... 40 7.5
63emb|AL138807.12| Human DNA sequence from clone RP5-827A12 on chr... 40 7.5
64emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, ... 40 7.5
65emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BA... 40 7.5
66gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Canc... 40 7.5
67emb|BX649301.3| Zebrafish DNA sequence from clone DKEY-208D13 in... 40 7.5
68emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in ... 40 7.5
69gb|AC021491.16| Homo sapiens chromosome 17, clone RP11-94C24, co... 40 7.5
70gb|AC019227.4| Homo sapiens BAC clone RP11-567O18 from 11, compl... 40 7.5
71dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
72dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
73gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaC... 40 7.5
74gb|BC084415.1| Xenopus laevis hypothetical LOC495188, mRNA (cDNA... 40 7.5
75gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.11... 40 7.5
76gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re... 40 7.5
77gb|AC171638.2| Rhesus Macaque BAC CH250-504D18 (Children's Hosp... 40 7.5
78dbj|AP002986.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.5 
>dbj|AK111986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G04, full
           insert sequence
          Length = 1249

 Score =  309 bits (156), Expect = 5e-81
 Identities = 225/248 (90%)
 Strand = Plus / Minus

                                                                       
Query: 304 gggactggagctaacaactgcatcccccggcctgtgcctgcgactgagatgagttagcat 363
           ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 863 gggactgaagctaacaactgcatcccccagcctgtgcctgagactgggatgagttggcgt 804

                                                                       
Query: 364 tgctggactttaagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctcca 423
           |||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 803 tgcttgacttcaagttcacatcaaccatgtcttcctgctttgctgatgagagggtctcca 744

                                                                       
Query: 424 ttccaggcagtgcagcagcaatcttgcggaacagagccttaatgttaaaaccagctttag 483
           ||||||| |||||||| |||||||| |||||||  |||||||||||||||||||||||||
Sbjct: 743 ttccaggaagtgcagccgcaatcttacggaacaacgccttaatgttaaaaccagctttag 684

                                                                       
Query: 484 cactggtctcaataaacatcacaccgaggtcctttgccttgccttctccttcctcaatgg 543
           ||||||| ||||| |||||||||||||| || || || ||||| ||||||||||| ||||
Sbjct: 683 cactggtttcaatgaacatcacaccgagatctttcgctttgccctctccttcctctatgg 624

                   
Query: 544 agacttgc 551
           ||||||||
Sbjct: 623 agacttgc 616



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                        
Query: 126  gataggagttcacagtgccaacccaactatacactgttgctagc-ttaggccactgacaa 184
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 1110 gatagaagttcacagtgccaacccaactatacactgttgctagctttaggccactgagaa 1051

               
Query: 185  aat 187
            |||
Sbjct: 1050 aat 1048
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>ref|NM_187359.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 627

 Score =  297 bits (150), Expect = 2e-77
 Identities = 216/238 (90%)
 Strand = Plus / Minus

                                                                       
Query: 314 ctaacaactgcatcccccggcctgtgcctgcgactgagatgagttagcattgctggactt 373
           |||||||||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||
Sbjct: 627 ctaacaactgcatcccccagcctgtgcctgagactgggatgagttggcgttgcttgactt 568

                                                                       
Query: 374 taagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcag 433
            ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 567 caagttcacatcaaccatgtcttcctgctttgctgatgagagggtctccattccaggaag 508

                                                                       
Query: 434 tgcagcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctc 493
           |||||| |||||||| |||||||  |||||||||||||||||||||||||||||||| ||
Sbjct: 507 tgcagccgcaatcttacggaacaacgccttaatgttaaaaccagctttagcactggtttc 448

                                                                     
Query: 494 aataaacatcacaccgaggtcctttgccttgccttctccttcctcaatggagacttgc 551
           ||| |||||||||||||| || || || ||||| ||||||||||| ||||||||||||
Sbjct: 447 aatgaacatcacaccgagatctttcgctttgccctctccttcctctatggagacttgc 390
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>gb|AY103845.1| Zea mays PCO078224 mRNA sequence
          Length = 1136

 Score =  262 bits (132), Expect = 1e-66
 Identities = 234/268 (87%)
 Strand = Plus / Minus

                                                                       
Query: 284 atcatgagctgccactgttagggactggagctaacaactgcatcccccggcctgtgcctg 343
           ||||||||| || | ||| || ||||| | |||||||||||||||||| ||||| |||||
Sbjct: 771 atcatgagcagcaagtgtcagagactgcaactaacaactgcatcccccagcctgagcctg 712

                                                                       
Query: 344 cgactgagatgagttagcattgctggactttaagttcacatcaaccatgtcttcctgctt 403
            ||||| || ||||| |||||||  ||| | |||||||||||||||||||||||||| ||
Sbjct: 711 agactgggacgagtttgcattgccagacctcaagttcacatcaaccatgtcttcctgttt 652

                                                                       
Query: 404 tgctgacgaaagggtctccattccaggcagtgcagcagcaatcttgcggaacagagcctt 463
            ||||| || || |||||||| ||||| || ||||||||||| || |||||||| |||||
Sbjct: 651 cgctgatgagagtgtctccataccaggaagggcagcagcaattttacggaacagcgcctt 592

                                                                       
Query: 464 aatgttaaaaccagctttagcactggtctcaataaacatcacaccgaggtcctttgcctt 523
           ||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 591 aatgttaaacccagctttagcactggtttcaataaacatgacaccaaggtcctttgcctt 532

                                       
Query: 524 gccttctccttcctcaatggagacttgc 551
           ||||||||||||||| || |||||||||
Sbjct: 531 gccttctccttcctctatcgagacttgc 504



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 83/94 (88%), Gaps = 1/94 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacataaaccaatcactaactctaatactcagc-cgagcgataggagttcacagtgccaa 146
            ||||| ||||||| |||| ||||||||| || | ||| || ||| ||||  |||||||||
Sbjct: 1018 aacatgaaccaataactagctctaatacccaactcgaacggtagaagtttgcagtgccaa 959

                                              
Query: 147  cccaactatacactgttgctagcttaggccactg 180
            ||||||||||||||||||||||||||||||||||
Sbjct: 958  cccaactatacactgttgctagcttaggccactg 925
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  200 bits (101), Expect = 3e-48
 Identities = 140/153 (91%)
 Strand = Plus / Plus

                                                                            
Query: 304      gggactggagctaacaactgcatcccccggcctgtgcctgcgactgagatgagttagcat 363
                ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 18525702 gggactgaagctaacaactgcatcccccagcctgtgcctgagactgggatgagttggcgt 18525761

                                                                            
Query: 364      tgctggactttaagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctcca 423
                |||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 18525762 tgcttgacttcaagttcacatcaaccatgtcttcctgctttgctgatgagagggtctcca 18525821

                                                 
Query: 424      ttccaggcagtgcagcagcaatcttgcggaaca 456
                ||||||| |||||||| |||||||| |||||||
Sbjct: 18525822 ttccaggaagtgcagccgcaatcttacggaaca 18525854



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                            
Query: 460      ccttaatgttaaaaccagctttagcactggtctcaataaacatcacaccgaggtcctttg 519
                ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || |
Sbjct: 18526048 ccttaatgttaaaaccagctttagcactggtttcaatgaacatcacaccgagatctttcg 18526107

                                                
Query: 520      ccttgccttctccttcctcaatggagacttgc 551
                | ||||| ||||||||||| ||||||||||||
Sbjct: 18526108 ctttgccctctccttcctctatggagacttgc 18526139



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                            
Query: 126      gataggagttcacagtgccaacccaactatacactgttgctagc-ttaggccactgacaa 184
                ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 18525455 gatagaagttcacagtgccaacccaactatacactgttgctagctttaggccactgagaa 18525514

                   
Query: 185      aat 187
                |||
Sbjct: 18525515 aat 18525517
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  200 bits (101), Expect = 3e-48
 Identities = 140/153 (91%)
 Strand = Plus / Plus

                                                                         
Query: 304   gggactggagctaacaactgcatcccccggcctgtgcctgcgactgagatgagttagcat 363
             ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 54458 gggactgaagctaacaactgcatcccccagcctgtgcctgagactgggatgagttggcgt 54517

                                                                         
Query: 364   tgctggactttaagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctcca 423
             |||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 54518 tgcttgacttcaagttcacatcaaccatgtcttcctgctttgctgatgagagggtctcca 54577

                                              
Query: 424   ttccaggcagtgcagcagcaatcttgcggaaca 456
             ||||||| |||||||| |||||||| |||||||
Sbjct: 54578 ttccaggaagtgcagccgcaatcttacggaaca 54610



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                         
Query: 460   ccttaatgttaaaaccagctttagcactggtctcaataaacatcacaccgaggtcctttg 519
             ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || || |
Sbjct: 54804 ccttaatgttaaaaccagctttagcactggtttcaatgaacatcacaccgagatctttcg 54863

                                             
Query: 520   ccttgccttctccttcctcaatggagacttgc 551
             | ||||| ||||||||||| ||||||||||||
Sbjct: 54864 ctttgccctctccttcctctatggagacttgc 54895



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                         
Query: 126   gataggagttcacagtgccaacccaactatacactgttgctagc-ttaggccactgacaa 184
             ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 54211 gatagaagttcacagtgccaacccaactatacactgttgctagctttaggccactgagaa 54270

                
Query: 185   aat 187
             |||
Sbjct: 54271 aat 54273
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>gb|AY553366.1| Elaeis oleifera small-protein-like mRNA, partial sequence
          Length = 474

 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                       
Query: 375 aagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagt 434
           |||||||||| |||||||||||||||||| |  ||||| || |||||||| || ||||||
Sbjct: 472 aagttcacataaaccatgtcttcctgcttcgtagacgagagagtctccatccctggcagt 413

                                                                       
Query: 435 gcagcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctca 494
           |||||||||||||| |||||||  ||||| ||||| || |||||||| ||||| || |||
Sbjct: 412 gcagcagcaatcttacggaacaacgcctttatgttgaagccagctttggcacttgtttca 353

                            
Query: 495 ataaacatcacaccgag 511
           |||||||| ||||||||
Sbjct: 352 ataaacatgacaccgag 336
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>gb|BT013317.1| Lycopersicon esculentum clone 135002R, mRNA sequence
          Length = 1182

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 103/126 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||||||||| ||||| || || || || ||||||||||| |||| ||| || 
Sbjct: 758 acatcaaccatgtcttcttgcttagccgaagatagtgtctccattcctggcaatgctgct 699

                                                                       
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaataaac 500
           ||||| || |  || ||||  ||||| || || ||||| || |||||||| |||||||||
Sbjct: 698 gcaattttcctaaatagaggtttaatattgaagccagcctttgcactggtttcaataaac 639

                 
Query: 501 atcaca 506
           ||||||
Sbjct: 638 atcaca 633
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>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE
          Length = 126498

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                          
Query: 369    gactttaagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattcca 428
              ||||||||||| |||||||||| |||||| || ||||| || || || || |||||||||
Sbjct: 102856 gactttaagtttacatcaaccaagtcttcttgttttgcagaagatagtgtttccattcca 102797

                               
Query: 429    ggcagtgcagcagcaat 445
              || | ||||||||||||
Sbjct: 102796 ggtaatgcagcagcaat 102780



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 460    ccttaatgttaaaaccagctttagcactggtctcaataaacat 502
              ||||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 102382 ccttaatattaaatccagctttagcgctagtttcaataaacat 102340
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                           
Query: 387     accatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagcagcaatc 446
               |||||||||||||||||||| || || || | ||||||||||||||| |  ||||| |||
Sbjct: 4747763 accatgtcttcctgctttgccgatgagagcgcctccattccaggcagcgatgcagcgatc 4747704

                          
Query: 447     ttgcggaacag 457
               ||||| |||||
Sbjct: 4747703 ttgcgaaacag 4747693
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 387   accatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagcagcaatc 446
             |||||||||||||||||||| || || || | ||||||||||||||| |  ||||| |||
Sbjct: 87692 accatgtcttcctgctttgccgatgagagcgcctccattccaggcagcgatgcagcgatc 87751

                        
Query: 447   ttgcggaacag 457
             ||||| |||||
Sbjct: 87752 ttgcgaaacag 87762
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                           
Query: 387     accatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagcagcaatc 446
               |||||||||||||||||||| || || || | ||||||||||||||| |  ||||| |||
Sbjct: 4747878 accatgtcttcctgctttgccgatgagagcgcctccattccaggcagcgatgcagcgatc 4747819

                          
Query: 447     ttgcggaacag 457
               ||||| |||||
Sbjct: 4747818 ttgcgaaacag 4747808
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>ref|NM_130025.2| Arabidopsis thaliana RAB6; GTP binding AT2G44610 (RAB6) mRNA,
           complete cds
          Length = 1164

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||| || || ||||||| ||| || |  ||||||||||| ||||  || || 
Sbjct: 750 acatcaaccatatcctcttgctttgttgaagacaatgtctccattcccggcaaagctgct 691

                                                             
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggt 490
           || ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 690 gctatcttgcggaagagcgccttaatgttgaagcccgctttggcactggt 641
to top
>emb|BX820541.1|CNS0AACV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH45ZH05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 973

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||| || || ||||||| ||| || |  ||||||||||| ||||  || || 
Sbjct: 660 acatcaaccatatcctcttgctttgttgaagacaatgtctccattcccggcaaagctgct 601

                                                             
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggt 490
           || ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 600 gctatcttgcggaagagcgccttaatgttgaagcccgctttggcactggt 551
to top
>emb|BX820517.1|CNS0A9YT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH43ZC11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1049

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||| || || ||||||| ||| || |  ||||||||||| ||||  || || 
Sbjct: 668 acatcaaccatatcctcttgctttgttgaagacaatgtctccattcccggcaaagctgct 609

                                                             
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggt 490
           || ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 608 gctatcttgcggaagagcgccttaatgttgaagcccgctttggcactggt 559
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>gb|AY087904.1| Arabidopsis thaliana clone 39499 mRNA, complete sequence
          Length = 1074

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||| || || ||||||| ||| || |  ||||||||||| ||||  || || 
Sbjct: 750 acatcaaccatatcctcttgctttgttgaagacaatgtctccattcccggcaaagctgct 691

                                                             
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggt 490
           || ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 690 gctatcttgcggaagagcgccttaatgttgaagcccgctttggcactggt 641
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>gb|L26984.1|ATHGTPBP Arabidopsis thaliana GTP-binding protein mRNA
          Length = 1000

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 381 acatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgcagca 440
           ||||||||||| || || ||||||| ||| || |  ||||||||||| ||||  || || 
Sbjct: 664 acatcaaccatatcctcttgctttgttgaagacaatgtctccattcccggcaaagctgct 605

                                                             
Query: 441 gcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggt 490
           || ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 604 gctatcttgcggaagagcgccttaatgttgaagcccgctttggcactggt 555
to top
>ref|NM_120152.1| Arabidopsis thaliana GTP binding AT4G39890 mRNA, complete cds
          Length = 913

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaata 497
           ||||||||||| ||||||| |||||||||||| ||     |||| |||||||||||||| 
Sbjct: 649 gcagcaatcttccggaacaaagccttaatgttgaagttttctttggcactggtctcaatg 590

                   
Query: 498 aacatcac 505
           ||||||||
Sbjct: 589 aacatcac 582
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>gb|BT000043.1| Arabidopsis thaliana small GTP-binding protein-like (At4g39890)
           mRNA, complete cds
          Length = 690

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaata 497
           ||||||||||| ||||||| |||||||||||| ||     |||| |||||||||||||| 
Sbjct: 506 gcagcaatcttccggaacaaagccttaatgttgaagttttctttggcactggtctcaatg 447

                   
Query: 498 aacatcac 505
           ||||||||
Sbjct: 446 aacatcac 439
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>gb|AF386952.1|AF386952 Arabidopsis thaliana small GTP-binding protein-like (T5J17.60)
           mRNA, complete cds
          Length = 913

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaata 497
           ||||||||||| ||||||| |||||||||||| ||     |||| |||||||||||||| 
Sbjct: 649 gcagcaatcttccggaacaaagccttaatgttgaagttttctttggcactggtctcaatg 590

                   
Query: 498 aacatcac 505
           ||||||||
Sbjct: 589 aacatcac 582
to top
>gb|AF325109.1|AF325109 Arabidopsis thaliana small GTP-binding protein-like (T5J17.60)
           mRNA, complete cds
          Length = 645

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaata 497
           ||||||||||| ||||||| |||||||||||| ||     |||| |||||||||||||| 
Sbjct: 506 gcagcaatcttccggaacaaagccttaatgttgaagttttctttggcactggtctcaatg 447

                   
Query: 498 aacatcac 505
           ||||||||
Sbjct: 446 aacatcac 439
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>ref|NM_121064.2| Arabidopsis thaliana GTP binding AT5G10260 mRNA, complete cds
          Length = 766

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                       
Query: 378 ttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgca 437
           |||||||||||||| || || || || | ||| ||||| || |||||||| || |  || 
Sbjct: 491 ttcacatcaaccatatcctcttgtttcgttgaagaaagtgtttccattcctggtaacgct 432

                                                                      
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaat 496
           || ||||||||||| || || | ||| |||||||| || ||||| ||||||||||||||
Sbjct: 431 gctgcaatcttgcgaaaaagtggcttgatgttaaatcctgcttttgcactggtctcaat 373
to top
>gb|BT024829.1| Arabidopsis thaliana At5g10260 gene, complete cds
          Length = 537

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                       
Query: 378 ttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgca 437
           |||||||||||||| || || || || | ||| ||||| || |||||||| || |  || 
Sbjct: 476 ttcacatcaaccatatcctcttgtttcgttgaagaaagtgtttccattcctggtaacgct 417

                                                                      
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaat 496
           || ||||||||||| || || | ||| |||||||| || ||||| ||||||||||||||
Sbjct: 416 gctgcaatcttgcgaaaaagtggcttgatgttaaatcctgcttttgcactggtctcaat 358
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>emb|BX833042.1|CNS09Z30 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL31ZB07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 766

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                       
Query: 378 ttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgca 437
           |||||||||||||| || || || || | ||| ||||| || |||||||| || |  || 
Sbjct: 491 ttcacatcaaccatatcctcttgtttcgttgaagaaagtgtttccattcctggtaacgct 432

                                                                      
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaat 496
           || ||||||||||| || || | ||| |||||||| || ||||| ||||||||||||||
Sbjct: 431 gctgcaatcttgcgaaaaagtggcttgatgttaaatcctgcttttgcactggtctcaat 373
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>gb|BT020541.1| Arabidopsis thaliana At5g10260 gene, complete cds
          Length = 765

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                       
Query: 378 ttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattccaggcagtgca 437
           |||||||||||||| || || || || | ||| ||||| || |||||||| || |  || 
Sbjct: 490 ttcacatcaaccatatcctcttgtttcgttgaagaaagtgtttccattcctggtaacgct 431

                                                                      
Query: 438 gcagcaatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctcaat 496
           || ||||||||||| || || | ||| |||||||| || ||||| ||||||||||||||
Sbjct: 430 gctgcaatcttgcgaaaaagtggcttgatgttaaatcctgcttttgcactggtctcaat 372
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>ref|NM_001032726.1| Homo sapiens RAB41, member RAS oncogene family (RAB41), mRNA
          Length = 1028

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 483 gcactggtctcaataaacatcaca 506
           ||||||||||||||||||||||||
Sbjct: 524 gcactggtctcaataaacatcaca 501
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>emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chromosome Xq13.2-21.1
             Contains the 5' end of the KIF4A gene for kinesin family
             member 4A, gene FLJ21093, a novel gene, the ARR3 gene for
             arrestin 3, retinal (x-arrestin), the P2RY4 gene for
             pyrimidinergic receptor P2Y, G-protein coupled, 4, the
             gene for a novel protein similar to diacylglycerol
             O-acyltransferase 2 like 1 (DGAT2L1), a novel pseudogene,
             the 3' end of the gene for a novel protein similar to
             diacylglycerol O-acyltransferase homolog 2 (mouse) (DGAT2)
             and two CpG islands, complete sequence
          Length = 178868

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 483   gcactggtctcaataaacatcaca 506
             ||||||||||||||||||||||||
Sbjct: 95571 gcactggtctcaataaacatcaca 95594
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>gb|L29273.1|TOBNTRAF Nicotiana tabacum SR1 Nt-rab6 mRNA, complete cds
          Length = 760

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 111/140 (79%)
 Strand = Plus / Minus

                                                                       
Query: 363 ttgctggactttaagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctcc 422
           ||||| ||||| | ||| ||||| ||||||||||| ||||| || || || |  ||||||
Sbjct: 698 ttgcttgacttgaggttgacatcgaccatgtcttcttgcttagcagaagataatgtctcc 639

                                                                       
Query: 423 attccaggcagtgcagcagcaatcttgcggaacagagccttaatgttaaaaccagcttta 482
           ||||| |||| ||| || ||||| || |  || || |  || || ||||| ||||| |||
Sbjct: 638 attcctggcaatgccgcggcaatttttctaaataggggttttatattaaagccagcctta 579

                               
Query: 483 gcactggtctcaataaacat 502
           |||||||| |||||||||||
Sbjct: 578 gcactggtttcaataaacat 559
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>ref|NM_125898.1| Arabidopsis thaliana GTP binding AT5G64990 mRNA, complete cds
          Length = 621

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 443 aatcttgcggaacagagccttaatgttaaaaccagctttagcactggtctc 493
           |||||| | ||||| || ||||||||| || |||||||||||||| |||||
Sbjct: 492 aatcttacagaacaaaggcttaatgttgaatccagctttagcactagtctc 442
to top
>emb|AJ278660.1|ANI278660 Aspergillus niger partial mRNA for SrgC protein for secretion
           related GTPase of the YPT/RAB family, 3'UTR
          Length = 615

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 478 ctttagcactggtctcaataaacatca 504
           ||||||||||||||||||| |||||||
Sbjct: 277 ctttagcactggtctcaatgaacatca 251
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>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3
          Length = 81494

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 460   ccttaatgttaaaaccagctttagcactggtctc 493
             |||||||||| || |||||||||||||| |||||
Sbjct: 61124 ccttaatgttgaatccagctttagcactagtctc 61157
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>ref|XM_417254.1| PREDICTED: Gallus gallus similar to RAB6A, member RAS oncogene
           family isoform a; Oncogene RAB6; RAB6, member RAS
           oncogene family; Rab GTPase (LOC419063), mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 527 ttctccttcctcaatggagacttgc 551
           |||||||||||||||||| ||||||
Sbjct: 786 ttctccttcctcaatggacacttgc 762
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>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence
          Length = 160709

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   aaatactaagaacacataaaa 204
             |||||||||||||||||||||
Sbjct: 84895 aaatactaagaacacataaaa 84915
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>ref|NM_026666.1| Mus musculus ubinuclein 1 (Ubn1), mRNA
          Length = 5656

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  caaaatactaagaacacataa 202
            |||||||||||||||||||||
Sbjct: 3936 caaaatactaagaacacataa 3956
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>gb|DQ470138.1| Gallus gallus GTP-binding protein (Rab6) mRNA, complete cds
          Length = 774

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 527 ttctccttcctcaatggagacttgc 551
           |||||||||||||||||| ||||||
Sbjct: 441 ttctccttcctcaatggacacttgc 417
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>gb|BC060723.1| Mus musculus ubinuclein 1, mRNA (cDNA clone IMAGE:6406329), partial
            cds
          Length = 5314

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  caaaatactaagaacacataa 202
            |||||||||||||||||||||
Sbjct: 3614 caaaatactaagaacacataa 3634
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>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence
          Length = 233527

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    caaaatactaagaacacataa 202
              |||||||||||||||||||||
Sbjct: 216412 caaaatactaagaacacataa 216392
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>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete
             sequence
          Length = 181475

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   caaaatactaagaacacataa 202
             |||||||||||||||||||||
Sbjct: 86219 caaaatactaagaacacataa 86239
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>gb|AC024168.5| Homo sapiens chromosome 3 clone RP11-622P3 map 3p, complete sequence
          Length = 186276

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 173  ggccactgacaaaatactaagaaca 197
            ||||||||| |||||||||||||||
Sbjct: 3228 ggccactgaaaaaatactaagaaca 3252
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>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 173    ggccactgacaaaatactaagaaca 197
              ||||||||| |||||||||||||||
Sbjct: 156716 ggccactgaaaaaatactaagaaca 156740
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence
          Length = 181338

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    caaaatactaagaacacataa 202
              |||||||||||||||||||||
Sbjct: 134417 caaaatactaagaacacataa 134437
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>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence
          Length = 168622

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   aaatactaagaacacataaaa 204
             |||||||||||||||||||||
Sbjct: 96377 aaatactaagaacacataaaa 96357
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>gb|BC098372.1| Mus musculus ubinuclein 1, mRNA (cDNA clone MGC:102206
            IMAGE:30363389), complete cds
          Length = 5656

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  caaaatactaagaacacataa 202
            |||||||||||||||||||||
Sbjct: 3936 caaaatactaagaacacataa 3956
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>emb|Z99765.1|FPZ99765 Flaveria pringlei gdcsH gene
          Length = 3611

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 375 aagttcacatcaaccatgtcttcctgctttgctgacgaaagggtctccattcc 427
           ||||||||||||||||  ||||| || |||| ||| ||||| || ||||||||
Sbjct: 622 aagttcacatcaaccagctcttcatgttttgttgaggaaagtgtttccattcc 570
to top
>emb|AL360334.1|ATF18D22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18D22 (ESSA project)
          Length = 57180

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 460   ccttaatgttaaaaccagctttagcactggtctcaat 496
             |||| |||||||| || ||||| ||||||||||||||
Sbjct: 25855 ccttgatgttaaatcctgcttttgcactggtctcaat 25819
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>dbj|AK147571.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1080L16
            product:ubinuclein 1, full insert sequence
          Length = 6456

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  caaaatactaagaacacataa 202
            |||||||||||||||||||||
Sbjct: 4777 caaaatactaagaacacataa 4797
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>gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequence
          Length = 108847

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 483   gcactggtctcaataaacatcacac 507
             |||||||||||||||||||| ||||
Sbjct: 75871 gcactggtctcaataaacattacac 75895
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>emb|CR390639.1| Gallus gallus finished cDNA, clone ChEST98e10
          Length = 1170

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 527 ttctccttcctcaatggagacttgc 551
           |||||||||||||||||| ||||||
Sbjct: 667 ttctccttcctcaatggacacttgc 643
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>dbj|AK084046.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130079H02 product:ubinuclein 1,
            full insert sequence
          Length = 3820

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 182  caaaatactaagaacacataa 202
            |||||||||||||||||||||
Sbjct: 2138 caaaatactaagaacacataa 2158
to top
>ref|XM_392533.2| PREDICTED: Apis mellifera similar to ENSANGP00000020507
           (LOC409004), mRNA
          Length = 784

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 474 ccagctttagcactggtctcaataaacat 502
           |||||||||||||| || |||||||||||
Sbjct: 633 ccagctttagcactagtttcaataaacat 605
to top
>gb|AF540409.1| Meleagris gallopavo microsatellite MNT-106 mRNA sequence
          Length = 844

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 527 ttctccttcctcaatggagacttgc 551
           |||||||||||||||||| ||||||
Sbjct: 399 ttctccttcctcaatggacacttgc 375
to top
>gb|AC105036.14| Homo sapiens chromosome 15, clone CTD-2323K18, complete sequence
          Length = 144333

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   accagctttagcactggtctc 493
             |||||||||||||||||||||
Sbjct: 24891 accagctttagcactggtctc 24911
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>emb|AL512885.4| Human DNA sequence from clone RP11-183N22 on chromosome 1, complete
              sequence
          Length = 165590

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 173    ggccactgacaaaatactaagaaca 197
              ||||||||| |||||||||||||||
Sbjct: 113960 ggccactgaaaaaatactaagaaca 113936
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>gb|AC131718.5| Mus musculus BAC clone RP23-171B16 from 6, complete sequence
          Length = 199299

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    ggcctgtgcctgcgactgaga 352
              |||||||||||||||||||||
Sbjct: 173944 ggcctgtgcctgcgactgaga 173964
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   ggcctgtgcctgcgactgaga 352
             |||||||||||||||||||||
Sbjct: 88420 ggcctgtgcctgcgactgaga 88440
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>emb|CT033198.1| Platynereis dumerilii EST IB0AAA25AA10EM1
          Length = 938

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 474 ccagctttagcactggtctcaataaacatcaca 506
           |||||||| ||||| || |||||||||||||||
Sbjct: 588 ccagctttcgcactagtttcaataaacatcaca 556
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>emb|CT032304.1| Platynereis dumerilii EST IB0AAA41AE10EM1
          Length = 918

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 474 ccagctttagcactggtctcaataaacatcaca 506
           |||||||| ||||| || |||||||||||||||
Sbjct: 607 ccagctttcgcactagtttcaataaacatcaca 575
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>gb|AC128625.4| Rattus norvegicus 1 BAC CH230-300K22 (Children's Hospital Oakland
           Research Institute) complete sequence
          Length = 3519

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 aaaaccagctttagcactgg 489
           ||||||||||||||||||||
Sbjct: 487 aaaaccagctttagcactgg 506
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>ref|XM_420156.1| PREDICTED: Gallus gallus similar to cone arrestin (LOC422155), mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 477  gctttagcactggtctcaataaacatca 504
            |||||||||||||| |||||| ||||||
Sbjct: 2129 gctttagcactggtttcaatatacatca 2102
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>gb|AE004203.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 111
            of 251 of the complete chromosome
          Length = 10088

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  gcagtgcagcagcaatcttg 449
            ||||||||||||||||||||
Sbjct: 3406 gcagtgcagcagcaatcttg 3425
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>emb|AL589674.9| Human DNA sequence from clone RP11-137J7 on chromosome 6 Contains the
              NMBR gene for neuromedin B receptor, a novel gene and a CpG
              island, complete sequence
          Length = 110764

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    ctttgccttgccttctcctt 534
              ||||||||||||||||||||
Sbjct: 100885 ctttgccttgccttctcctt 100866
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>emb|AL356430.19| Human DNA sequence from clone RP11-467B13 on chromosome 13 Contains
            part of the NBEA gene for neurobeachin (BCL8B FLJ10197
            KIAA1544) and a pseudogene similar to part og a noveln
            proteon (KIAA1925), complete sequence
          Length = 170885

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  cccaactatacactgttgct 166
            ||||||||||||||||||||
Sbjct: 1569 cccaactatacactgttgct 1550
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>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2
             Contains the 5' end of a novel gene, complete sequence
          Length = 94056

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   actgacaaaatactaagaacacataaaa 204
             |||||||||||| |||||||||| ||||
Sbjct: 34541 actgacaaaatagtaagaacacagaaaa 34514



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   actgacaaaatactaagaacacataaaa 204
             |||||||||||| |||||||||| ||||
Sbjct: 34464 actgacaaaatagtaagaacacagaaaa 34437
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>emb|AL138807.12| Human DNA sequence from clone RP5-827A12 on chromosome 20 Contains part
             of the ATP9A (KIAA0611) gene for ATPase class II type 9A
             and a ribosomal protein L29 (RPL29) pseudogene, complete
             sequence
          Length = 67895

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   ccttgccttctccttcctca 539
             ||||||||||||||||||||
Sbjct: 61196 ccttgccttctccttcctca 61215
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>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92
          Length = 112067

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 478   ctttagcactggtctcaataaacatcac 505
             |||| |||||||||||||| ||||||||
Sbjct: 34203 ctttggcactggtctcaatgaacatcac 34176
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>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project)
          Length = 118267

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 478   ctttagcactggtctcaataaacatcac 505
             |||| |||||||||||||| ||||||||
Sbjct: 44770 ctttggcactggtctcaatgaacatcac 44743
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>gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 175087

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    ctaagaacacataaaaaacg 208
              ||||||||||||||||||||
Sbjct: 138206 ctaagaacacataaaaaacg 138187
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>emb|BX649301.3| Zebrafish DNA sequence from clone DKEY-208D13 in linkage group 10,
            complete sequence
          Length = 149467

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  aaaatactaagaacacataa 202
            ||||||||||||||||||||
Sbjct: 9484 aaaatactaagaacacataa 9465
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>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7, complete
              sequence
          Length = 187890

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 423    attccaggcagtgcagcagcaatcttgc 450
              |||||||||| ||||| |||||||||||
Sbjct: 176647 attccaggcattgcagtagcaatcttgc 176620
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>gb|AC021491.16| Homo sapiens chromosome 17, clone RP11-94C24, complete sequence
          Length = 175262

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ttagcattgctggactttaa 376
              ||||||||||||||||||||
Sbjct: 171040 ttagcattgctggactttaa 171021



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ttagcattgctggactttaa 376
              ||||||||||||||||||||
Sbjct: 169850 ttagcattgctggactttaa 169831
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>gb|AC019227.4| Homo sapiens BAC clone RP11-567O18 from 11, complete sequence
          Length = 190314

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    taatgttaaaaccagcttta 482
              ||||||||||||||||||||
Sbjct: 172359 taatgttaaaaccagcttta 172378
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 280      tgatatcatgagctgccact 299
                ||||||||||||||||||||
Sbjct: 16509929 tgatatcatgagctgccact 16509948
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>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tgatatcatgagctgccact 299
             ||||||||||||||||||||
Sbjct: 30599 tgatatcatgagctgccact 30618
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>gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-10 noaCRR1
            retrotransposon, partial sequence
          Length = 4140

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  tgatatcatgagctgccact 299
            ||||||||||||||||||||
Sbjct: 2119 tgatatcatgagctgccact 2138
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>gb|BC084415.1| Xenopus laevis hypothetical LOC495188, mRNA (cDNA clone
           IMAGE:7009749), partial cds
          Length = 1356

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 450 cggaacagagccttaatgtt 469
           ||||||||||||||||||||
Sbjct: 806 cggaacagagccttaatgtt 787
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>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence
          Length = 123585

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  ttagcattgctggactttaa 376
            ||||||||||||||||||||
Sbjct: 3215 ttagcattgctggactttaa 3196



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  ttagcattgctggactttaa 376
            ||||||||||||||||||||
Sbjct: 2025 ttagcattgctggactttaa 2006
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>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
             RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
             U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   attgctggactttaagttca 381
             ||||||||||||||||||||
Sbjct: 93308 attgctggactttaagttca 93327
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>gb|AC171638.2| Rhesus Macaque  BAC CH250-504D18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 160646

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   actaagaacacataaaaaac 207
             ||||||||||||||||||||
Sbjct: 65046 actaagaacacataaaaaac 65027
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>dbj|AP002986.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-121M22, complete
             sequence
          Length = 157963

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   taatgttaaaaccagcttta 482
             ||||||||||||||||||||
Sbjct: 20256 taatgttaaaaccagcttta 20275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,331,213
Number of Sequences: 3902068
Number of extensions: 5331213
Number of successful extensions: 89007
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88785
Number of HSP's gapped (non-prelim): 218
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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