ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full... 74 3e-10
2gb|AY491745.1| Trypanosoma rangeli isolate SC58 18S ribosomal RN... 42 1.0
3gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, com... 40 4.0
4emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in ... 40 4.0
5gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, comp... 40 4.0

>gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full insert mRNA
            sequence
          Length = 2298

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 225  tctgtctgtcatcatgtacaaaagagagctagaaattctgcaacgaggggctg 277
            |||||| |||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 2116 tctgtcggtcatcatgtacaaaagagagctaaaaattctgaaacgaggcgctg 2064



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>gb|AY491745.1| Trypanosoma rangeli isolate SC58 18S ribosomal RNA gene, partial
           sequence
          Length = 875

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cgtacaaacaaaacantacagcag 32
           ||||||||||||||| ||||||||
Sbjct: 414 cgtacaaacaaaacaatacagcag 391



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>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence
          Length = 275200

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 16     acaaaacantacagcaggatttagcac 42
              ||||| || ||||||||||||||||||
Sbjct: 119605 acaaatcaatacagcaggatttagcac 119579



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>emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in linkage group 5, complete
              sequence
          Length = 205281

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    ggactctgtctgtcatcatg 240
              ||||||||||||||||||||
Sbjct: 169143 ggactctgtctgtcatcatg 169124



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>gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, complete sequence
          Length = 128624

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    agctagaaattctgcaacgagggg 274
              |||||||||||||| |||||||||
Sbjct: 101989 agctagaaattctgaaacgagggg 102012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,563,220
Number of Sequences: 3902068
Number of extensions: 2563220
Number of successful extensions: 40906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40896
Number of HSP's gapped (non-prelim): 10
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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