ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late en... 30 2.6
2VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa... 28 7.6

>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein|
           18) (Small proline-rich-like epidermal differentiation
           complex protein 5A)
          Length = 118

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 65  QKSVPEKKCTPTCSPVLTPSC 127
           Q+  P  KCTP C P  TP C
Sbjct: 8   QQCQPPPKCTPKCPPKCTPKC 28



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>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton
           translocating ATPase 116 kDa subunit a kidney isoform)
          Length = 833

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 439 RLISWLGRASLIIFILAFMIFVSAISLGGVGISNMIHKIEQHEYMGFEN 293
           RL  W G   + I    F +   AI L   G+S  +H +  H ++ F+N
Sbjct: 761 RLQGWAGLVGVFIIFAVFAVLTVAILLVMEGLSAFLHALRLH-WVEFQN 808


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,361,014
Number of Sequences: 219361
Number of extensions: 1005608
Number of successful extensions: 2532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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