ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26n09 |
|---|---|
| Clone Library Name | barley_pub |
>GOS11_ARATH (Q9LMP7) Golgi SNARE 11 protein (AtGOS11) (Golgi SNAP receptor| complex member 1-1) Length = 223 Score = 203 bits (516), Expect = 3e-52 Identities = 102/146 (69%), Positives = 124/146 (84%), Gaps = 1/146 (0%) Frame = -1 Query: 511 SHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLL-DLRDFDRAKFXVEESGDSEQALLR 335 SHTLTRH EILQDLTQEFYR RSSLR KQ+HASLL D R+FDR + +E+ SEQAL++ Sbjct: 78 SHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGSEQALIK 137 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E I+RN+ Q+D VISQAQATLG L+ QRSTFGGI +K+SNV+SR+PT+N IL +I+RK Sbjct: 138 EHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRK 197 Query: 154 KSMDTIILSLVASVCAFLMFIYWLSK 77 KSMDTIILSLVA+VC FL+FIYW++K Sbjct: 198 KSMDTIILSLVAAVCTFLIFIYWITK 223
>GOS12_ARATH (O22151) Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor| complex member 1-2) Length = 239 Score = 111 bits (277), Expect = 1e-24 Identities = 58/142 (40%), Positives = 84/142 (59%) Frame = -1 Query: 502 LTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEESGDSEQALLREQAA 323 L RH +IL + TQEF R++ ++ ++HA LL D +++ S +LRE+A+ Sbjct: 98 LARHRDILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERAS 157 Query: 322 ISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRKKSMD 143 I + +D VI QAQAT L SQRS F + K+ N+ + P I +L SI+RK+S D Sbjct: 158 IHGSISHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRD 217 Query: 142 TIILSLVASVCAFLMFIYWLSK 77 T+ILS V + C + IYWLSK Sbjct: 218 TLILSAVIAACTLFLIIYWLSK 239
>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 73.6 bits (179), Expect = 3e-13 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDL--RDFDRAKFXVEESGDSEQALLR 335 HTL RH +ILQD T EF++ +++ ++ +L+ +D + K + + L+ Sbjct: 106 HTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLK 165 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E + + ++ IS A AT + SQR I +K++ +++R P +N ++ I + Sbjct: 166 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLR 225 Query: 154 KSMDTIILSLVASVCAFLMFIY 89 K D++IL V +C L+ +Y Sbjct: 226 KRRDSLILGGVIGICTILLLLY 247
>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 73.6 bits (179), Expect = 3e-13 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDL--RDFDRAKFXVEESGDSEQALLR 335 HTL RH +ILQD T EF++ +++ ++ +L+ +D + K + + L+ Sbjct: 106 HTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLK 165 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E + + ++ IS A AT + SQR I +K++ +++R P +N ++ I + Sbjct: 166 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLR 225 Query: 154 KSMDTIILSLVASVCAFLMFIY 89 K D++IL V +C L+ +Y Sbjct: 226 KRRDSLILGGVIGICTILLLLY 247
>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 73.6 bits (179), Expect = 3e-13 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDL--RDFDRAKFXVEESGDSEQALLR 335 HTL RH +ILQD T EF++ +++ ++ +L+ +D + K + + L+ Sbjct: 106 HTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLK 165 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E + + ++ IS A AT + SQR I +K++ +++R P +N ++ I + Sbjct: 166 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLR 225 Query: 154 KSMDTIILSLVASVCAFLMFIY 89 K D++IL V +C L+ +Y Sbjct: 226 KRRDSLILGGVIGICTILLLLY 247
>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 73.6 bits (179), Expect = 3e-13 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDL--RDFDRAKFXVEESGDSEQALLR 335 HTL RH +ILQD T EF++ +++ ++ +L+ +D + K + + L+ Sbjct: 106 HTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLK 165 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E + + ++ IS A AT + SQR I +K++ +++R P +N ++ I + Sbjct: 166 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLR 225 Query: 154 KSMDTIILSLVASVCAFLMFIY 89 K D++IL V +C L+ +Y Sbjct: 226 KRRDSLILGGVIGICTILLLLY 247
>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1| Length = 248 Score = 72.8 bits (177), Expect = 5e-13 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDL--RDFDRAKFXVEESGDSEQALLR 335 HTL RH +ILQD T EF++ +++ ++ +L+ +D + K + + L+ Sbjct: 104 HTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRKDIESYKSGSGVNNRRTELFLK 163 Query: 334 EQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 E + + ++ IS A AT + SQR I +K++ +++R P +N ++ I + Sbjct: 164 EHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLR 223 Query: 154 KSMDTIILSLVASVCAFLMFIY 89 K D++IL V +C L+ +Y Sbjct: 224 KRRDSLILGGVIGICTILLLLY 245
>GOS1_YEAST (P38736) Protein transport protein GOS1 (Golgi SNARE protein 1)| (Golgi SNAP receptor complex member 1) Length = 223 Score = 69.7 bits (169), Expect = 4e-12 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Frame = -1 Query: 502 LTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEES---GDSEQALLRE 332 L RH EILQD + F +RSS++ ++ +LL D A + GD+++ + E Sbjct: 82 LHRHKEILQDHWKSFRNIRSSIQQERNRLNLLFSVKNDIANSTTDAPAPIGDADEYIQNE 141 Query: 331 QAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRKK 152 I +++ VD +ISQA T SQ + K+ RIP +N ++ I ++ Sbjct: 142 TRRIDQSNNVVDRLISQAWETRSQFHSQSNVLNTANNKVLQTLQRIPGVNQLIMKINTRR 201 Query: 151 SMDTIILSLVASVCAFLMFIYW 86 + +L+ + ++C +F W Sbjct: 202 KKNAFVLATITTLCILFLFFTW 223
>GOSR1_DROME (Q9VE50) Probable 28 kDa Golgi SNARE protein (Golgi SNAP receptor| complex member 1) Length = 232 Score = 65.9 bits (159), Expect = 6e-11 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 1/141 (0%) Frame = -1 Query: 508 HTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEESG-DSEQALLRE 332 HTL RH EILQ QEF ++ ++ ++ + LL + SG + + L+E Sbjct: 89 HTLQRHREILQGYRQEFNKICANHTMRIEREELLRGSGLATSSGSPSISGLNRREMYLKE 148 Query: 331 QAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRKK 152 ++ S V+ I+ A T L +QR F + T+ +++S+R P I+ ++ I KK Sbjct: 149 SGHLNSASHLVNDQINIAIETRDHLHAQRQAFKRLQTRFNDISNRFPLISSLIQRINIKK 208 Query: 151 SMDTIILSLVASVCAFLMFIY 89 D++IL V C L+ +Y Sbjct: 209 RRDSLILGAVIGFCVILLLLY 229
>BOS1_SCHPO (Q9P7G5) Vesicular transport protein bos1| Length = 235 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -1 Query: 352 EQALLREQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHIL 173 + LL+E + R QVD + + + LG L+ Q S TK+ N ++ + H L Sbjct: 143 QDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQGSVLKATKTKVLNAANTLGITRHTL 202 Query: 172 TSIRRKKSMDTIILSLVASVC-AFLMFI 92 + I R+ D II C AFL+F+ Sbjct: 203 SLINRRSKQDKIIF-----YCGAFLVFV 225
>GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2| Length = 216 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = -1 Query: 301 VDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRKKSMDTIIL--S 128 VD +I+ L +L+SQR T GG +I + S + NH + I R+ D I Sbjct: 140 VDDMIASGSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGG 199 Query: 127 LVASVCAFLMFIYWL 83 +V ++ + IY+L Sbjct: 200 VVVTLLIIALIIYFL 214
>BOS1_YARLI (Q6BZQ6) Vesicular transport protein BOS1| Length = 226 Score = 36.6 bits (83), Expect = 0.041 Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 22/163 (13%) Frame = -1 Query: 502 LTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEESGDS---------- 353 L R E L D EF LRS+ K L + A F G+S Sbjct: 71 LARFREELADARSEFKNLRSAREEKT-------LEENKTALFGDNPYGESRNRNVNRDVP 123 Query: 352 ----------EQALLREQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVS 203 E+ + REQ+++++ Q+D+ I Q A LG L Q K+ +V+ Sbjct: 124 IQPTYTDLTREEGMQREQSSLNQVGQQLDSFIEQGMAALGDLQEQSDILRSTGKKMRSVA 183 Query: 202 SRIPTINHILTSIRRKKSMDTIIL--SLVASVCAFLMFIYWLS 80 + + + ++ D +V + F + W S Sbjct: 184 ETLGLSRETIKMVEKRARQDKRFFYGGIVFMLVCFYYILKWFS 226
>BOS1_YEAST (P25385) Vesicular transport protein BOS1| Length = 244 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = -1 Query: 349 QALLREQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILT 170 Q L +EQ+ R + Q+D ++ Q + ++ Q + ++SN + +T Sbjct: 153 QGLQKEQSVFERGNAQLDYILEMGQQSFENIVEQNKILSKVQDRMSNGLRTLGVSEQTIT 212 Query: 169 SIRRKKSMDTII--LSLVASVCAFLMFIYWL 83 SI ++ D ++ ++L+ + + WL Sbjct: 213 SINKRVFKDKLVFWIALILLIIGIYYVLKWL 243
>BOS1_CANGA (Q6FKA1) Vesicular transport protein BOS1| Length = 240 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/89 (21%), Positives = 42/89 (47%) Frame = -1 Query: 343 LLREQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSI 164 L +EQ+ R + Q+D ++ Q +L +M Q + ++S + + +I Sbjct: 151 LQKEQSIFQRGNAQLDMILEMGQQSLDDIMEQNQILLKVQDQMSRSLRTLGVSEETIQTI 210 Query: 163 RRKKSMDTIILSLVASVCAFLMFIYWLSK 77 ++ D +I L+ + FL+ +Y++ K Sbjct: 211 NKRVFKDKLIFILI--IFLFLVGVYYVLK 237
>CD72_HUMAN (P21854) B-cell differentiation antigen CD72 (Lyb-2)| Length = 359 Score = 32.3 bits (72), Expect = 0.77 Identities = 25/94 (26%), Positives = 41/94 (43%) Frame = -1 Query: 475 DLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEESGDSEQALLREQAAISRNSGQVD 296 ++T R + L++ Q S DL+ R E S++AL EQ A GQ+ Sbjct: 133 EVTNSSLRQQLRLKITQLGQSAEDLQGSRR------ELAQSQEALQVEQRAHQAAEGQLQ 186 Query: 295 TVISQAQATLGALMSQRSTFGGITTKISNVSSRI 194 + Q T L S+ + K+SN+ +R+ Sbjct: 187 ACQADRQKTKETLQSEEQQRRALEQKLSNMENRL 220
>COX18_KLULA (P78990) Inner membrane protein COX18, mitochondrial precursor| (Cytochrome c oxidase assembly protein 18) Length = 313 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = -1 Query: 232 GITTKISNVSSRIPTINHILTSIRRKKSMDTIILSLVASVCAFLMFIYWLS 80 GITT S T+N ILT+ R + TI L V++ + L+ +YW++ Sbjct: 247 GITTATDTQSRTSQTVNSILTATR----LSTIFLIGVSTQASVLLSLYWIT 293
>NIN_MOUSE (Q61043) Ninein| Length = 2035 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/59 (30%), Positives = 33/59 (55%) Frame = -1 Query: 475 DLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFXVEESGDSEQALLREQAAISRNSGQV 299 +++ E RL+++++ QQ ASLL L+ +A E GD +LL++ + +G V Sbjct: 1003 EMSTEICRLQNTVKDMQQAASLLMLQGGCQATAGEEAEGDGAMSLLQQGEQLLEENGDV 1061
>EMSY_BRARE (Q7ZUV7) Protein EMSY| Length = 1173 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 322 ISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNV 206 + SG + TV+ +A ATLG + S G TTKI+ + Sbjct: 511 VKTTSGSIITVVPKALATLGGKIITTSMVSGTTTKITTI 549
>YDGH_BACSU (P96706) Putative membrane protein ydgH| Length = 885 Score = 30.0 bits (66), Expect = 3.8 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = -1 Query: 373 VEESGDSEQALLREQAAISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRI 194 + ++G++ Q + ++ AIS GQ+ T + QA L Q++ G +T + +S + Sbjct: 535 ISQTGNTAQTV-QQLTAISGQLGQIQTGLEQANQQLS---GQQAQAGTLTESLKKLSEGV 590 Query: 193 PTINHILTSI 164 + N LT + Sbjct: 591 KSANEGLTKV 600
>PLB1_PENCH (P39457) Lysophospholipase precursor (EC 3.1.1.5) (Phospholipase B)| (Fragment) Length = 612 Score = 30.0 bits (66), Expect = 3.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 116 GRHEGKDDGVHRFLPPDRREDVINRGDPAADVAYFGSDAT 235 G +G++ +H + P+R DVI D +AD YF + T Sbjct: 390 GGEDGQNVPLHPLIQPERHVDVIFAVDSSADTDYFWPNGT 429
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 322 ISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNV 206 + SG + TV+ ++ ATLG + + G TTKI+ + Sbjct: 496 VKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTI 534
>EMSY_HUMAN (Q7Z589) Protein EMSY| Length = 1322 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 322 ISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNV 206 + SG + TV+ ++ ATLG + + G TTKI+ + Sbjct: 532 VKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTI 570
>FTSY_NEIMC (O30391) Cell division protein ftsY homolog| Length = 421 Score = 29.3 bits (64), Expect = 6.5 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = -1 Query: 364 SGDSEQALLREQAAISRNSGQVDTVISQAQATLGALMS---QRSTFGGITTKISNVSSRI 194 +GD+ +A REQ V TVISQ A+ Q + GI +++ + R+ Sbjct: 256 AGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 314 Query: 193 PTINHILTSIRRKK 152 PT H++ I++ K Sbjct: 315 PTQLHLMEEIKKVK 328
>FTSY_NEIMB (P57011) Cell division protein ftsY homolog| Length = 421 Score = 29.3 bits (64), Expect = 6.5 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = -1 Query: 364 SGDSEQALLREQAAISRNSGQVDTVISQAQATLGALMS---QRSTFGGITTKISNVSSRI 194 +GD+ +A REQ V TVISQ A+ Q + GI +++ + R+ Sbjct: 256 AGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 314 Query: 193 PTINHILTSIRRKK 152 PT H++ I++ K Sbjct: 315 PTQLHLMEEIKKVK 328
>FTSY_NEIMA (P57010) Cell division protein ftsY homolog| Length = 421 Score = 29.3 bits (64), Expect = 6.5 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = -1 Query: 364 SGDSEQALLREQAAISRNSGQVDTVISQAQATLGALMS---QRSTFGGITTKISNVSSRI 194 +GD+ +A REQ V TVISQ A+ Q + GI +++ + R+ Sbjct: 256 AGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 314 Query: 193 PTINHILTSIRRKK 152 PT H++ I++ K Sbjct: 315 PTQLHLMEEIKKVK 328
>CCHCR_MOUSE (Q8K2I2) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 770 Score = 29.3 bits (64), Expect = 6.5 Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Frame = -1 Query: 496 RHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDR-AKFXVEESGDSEQALLREQA-- 326 +H + L + L+ + + Q ++L D+ A+ VE + +QA Sbjct: 354 QHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQE 413 Query: 325 AISRNSGQVDTVISQAQATLGALMSQRSTFGGITTKISNVSSRIPTINHILTSIRRK 155 A R Q+ + Q + +GA+ S ++ T++ +RIP++++ L+ RK Sbjct: 414 ARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRK 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,523,183 Number of Sequences: 219361 Number of extensions: 1257246 Number of successful extensions: 3329 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3321 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
