No.
Definition
Score (bits)
E Value
1 dbj|AK101300.1| Oryza sativa (japonica cultivar-group) cDNA clon...
375
e-100
2 dbj|AK061283.1| Oryza sativa (japonica cultivar-group) cDNA clon...
375
e-100
3 gb|AY106351.1| Zea mays PCO100185 mRNA sequence
295
7e-77
4 ref|XM_482607.1| Oryza sativa (japonica cultivar-group), mRNA
281
1e-72
5 ref|XM_507241.1| PREDICTED Oryza sativa (japonica cultivar-group...
281
1e-72
6 dbj|AK102539.1| Oryza sativa (japonica cultivar-group) cDNA clon...
281
1e-72
7 dbj|AK060959.1| Oryza sativa (japonica cultivar-group) cDNA clon...
281
1e-72
8 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
170
3e-39
9 dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D...
170
3e-39
10 dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D...
170
3e-39
11 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
12 dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
13 ref|XM_463968.1| Oryza sativa (japonica cultivar-group), mRNA
44
0.44
14 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.44
15 dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D...
44
0.44
16 dbj|AK071820.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.44
17 gb|AC122053.3| Mus musculus BAC clone RP24-463C3 from 3, complet...
40
6.9
18 gb|AE004385.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom...
40
6.9
19 emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chro...
40
6.9
20 gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl...
40
6.9
21 gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl...
40
6.9
22 gb|AC123769.5| Homo sapiens chromosome 17, clone RP11-1086I4, co...
40
6.9
23 gb|AC024610.6| Homo sapiens chromosome 17, clone RP11-17M24, com...
40
6.9
24 gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, comp...
40
6.9
25 gb|AC093641.5| Homo sapiens BAC clone RP11-335N7 from 2, complet...
40
6.9
26 emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chro...
40
6.9
27 dbj|AB022197.1| Halocynthia roretzi mRNA for homologue of mammli...
40
6.9
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 170 bits (86), Expect = 3e-39
Identities = 151/170 (88%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 300 acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
|||||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 14869847 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 14869906
Query: 357 tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
|| ||| |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 14869907 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 14869963
Query: 417 gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14869964 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 14870013
Score = 87.7 bits (44), Expect = 3e-14
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 197 ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
|||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 14867495 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 14867554
Query: 257 gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
||||| || || ||||||||||| |||||||||||| ||||||
Sbjct: 14867555 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 14867598
Score = 77.8 bits (39), Expect = 3e-11
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 74 ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
|||||||||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 14867284 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 14867343
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 14867344 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 14867394
Score = 65.9 bits (33), Expect = 1e-07
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 463 cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
|||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 14870258 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 14870306
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 attatctgtactggcactgtgatccaaacttacaacac 38
|||||||| |||| || |||||||||||||||||||||
Sbjct: 14867213 attatctgcactgacagtgtgatccaaacttacaacac 14867250
>dbj|AP005636.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0707C02
Length = 163609
Score = 170 bits (86), Expect = 3e-39
Identities = 151/170 (88%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 300 acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
|||||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 155236 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 155295
Query: 357 tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
|| ||| |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 155296 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 155352
Query: 417 gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 155353 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 155402
Score = 87.7 bits (44), Expect = 3e-14
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 197 ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
|||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 152884 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 152943
Query: 257 gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
||||| || || ||||||||||| |||||||||||| ||||||
Sbjct: 152944 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 152987
Score = 77.8 bits (39), Expect = 3e-11
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 74 ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
|||||||||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 152673 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 152732
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 152733 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 152783
Score = 65.9 bits (33), Expect = 1e-07
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 463 cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
|||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 155647 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 155695
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 attatctgtactggcactgtgatccaaacttacaacac 38
|||||||| |||| || |||||||||||||||||||||
Sbjct: 152602 attatctgcactgacagtgtgatccaaacttacaacac 152639
>dbj|AP005784.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0014G10
Length = 164147
Score = 170 bits (86), Expect = 3e-39
Identities = 151/170 (88%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 300 acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
|||||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 78186 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 78245
Query: 357 tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
|| ||| |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 78246 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 78302
Query: 417 gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 78303 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 78352
Score = 87.7 bits (44), Expect = 3e-14
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 197 ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
|||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 75834 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 75893
Query: 257 gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
||||| || || ||||||||||| |||||||||||| ||||||
Sbjct: 75894 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 75937
Score = 77.8 bits (39), Expect = 3e-11
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 74 ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
|||||||||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 75623 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 75682
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 75683 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 75733
Score = 65.9 bits (33), Expect = 1e-07
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 463 cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
|||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 78597 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 78645
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 attatctgtactggcactgtgatccaaacttacaacac 38
|||||||| |||| || |||||||||||||||||||||
Sbjct: 75552 attatctgcactgacagtgtgatccaaacttacaacac 75589
>dbj|AP008214.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 125 bits (63), Expect = 2e-25
Identities = 131/154 (85%)
Strand = Plus / Plus
Query: 313 tcctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttcca 372
|||||||||| |||||||||||| | || |||||||| || ||||| || |||||| |
Sbjct: 21394195 tcctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaa 21394254
Query: 373 cgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttca 432
| | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 21394255 catcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttg 21394314
Query: 433 ctctgagacttgatcgaagccgatagaattcctg 466
|||| || |||||||| || ||||||||||||||
Sbjct: 21394315 ctctaaggcttgatcggaggcgatagaattcctg 21394348
Score = 73.8 bits (37), Expect = 5e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 463 cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 21394568 cctgtgtaaggtcttgcaatatctccatatgacgagtcaatgtatgaga 21394616
Score = 67.9 bits (34), Expect = 3e-08
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 192 gggatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctga 251
|||| ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||
Sbjct: 21393254 gggagccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgc 21393313
Query: 252 gacatgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgt 305
|||| || | ||| | ||| |||||||||||||||||||| ||||||| ||||
Sbjct: 21393314 aacataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgt 21393367
Score = 54.0 bits (27), Expect = 5e-04
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 75 tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
|||||||||| ||| ||||| || |||||||| || || || || || || ||||| ||
Sbjct: 21393043 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 21393102
Query: 135 atgatggtgtccatcgatttctt 157
|| ||||||||||||||||||||
Sbjct: 21393103 ataatggtgtccatcgatttctt 21393125
>dbj|AP004702.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0524F03
Length = 167696
Score = 125 bits (63), Expect = 2e-25
Identities = 131/154 (85%)
Strand = Plus / Plus
Query: 313 tcctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttcca 372
|||||||||| |||||||||||| | || |||||||| || ||||| || |||||| |
Sbjct: 94120 tcctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaa 94179
Query: 373 cgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttca 432
| | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 94180 catcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttg 94239
Query: 433 ctctgagacttgatcgaagccgatagaattcctg 466
|||| || |||||||| || ||||||||||||||
Sbjct: 94240 ctctaaggcttgatcggaggcgatagaattcctg 94273
Score = 73.8 bits (37), Expect = 5e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 463 cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 94493 cctgtgtaaggtcttgcaatatctccatatgacgagtcaatgtatgaga 94541
Score = 67.9 bits (34), Expect = 3e-08
Identities = 94/114 (82%)
Strand = Plus / Plus
Query: 192 gggatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctga 251
|||| ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||
Sbjct: 93179 gggagccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgc 93238
Query: 252 gacatgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgt 305
|||| || | ||| | ||| |||||||||||||||||||| ||||||| ||||
Sbjct: 93239 aacataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgt 93292
Score = 54.0 bits (27), Expect = 5e-04
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 75 tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
|||||||||| ||| ||||| || |||||||| || || || || || || ||||| ||
Sbjct: 92968 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 93027
Query: 135 atgatggtgtccatcgatttctt 157
|| ||||||||||||||||||||
Sbjct: 93028 ataatggtgtccatcgatttctt 93050
>dbj|AB022197.1 | Halocynthia roretzi mRNA for homologue of mammlian thyroid
peroxidase, complete cds
Length = 3179
Score = 40.1 bits (20), Expect = 6.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 340 gaagagcttgttctgagtccccag 363
||||| ||||||||||||||||||
Sbjct: 2566 gaagaacttgttctgagtccccag 2589
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,067,636
Number of Sequences: 3902068
Number of extensions: 4067636
Number of successful extensions: 69601
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69451
Number of HSP's gapped (non-prelim): 140
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)