ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26n09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
2dbj|AK061283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
3gb|AY106351.1| Zea mays PCO100185 mRNA sequence 295 7e-77
4ref|XM_482607.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
5ref|XM_507241.1| PREDICTED Oryza sativa (japonica cultivar-group... 281 1e-72
6dbj|AK102539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
7dbj|AK060959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
9dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
10dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
12dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
13ref|XM_463968.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.44
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
15dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
16dbj|AK071820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.44
17gb|AC122053.3| Mus musculus BAC clone RP24-463C3 from 3, complet... 40 6.9
18gb|AE004385.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 6.9
19emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chro... 40 6.9
20gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 6.9
21gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.9
22gb|AC123769.5| Homo sapiens chromosome 17, clone RP11-1086I4, co... 40 6.9
23gb|AC024610.6| Homo sapiens chromosome 17, clone RP11-17M24, com... 40 6.9
24gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, comp... 40 6.9
25gb|AC093641.5| Homo sapiens BAC clone RP11-335N7 from 2, complet... 40 6.9
26emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chro... 40 6.9
27dbj|AB022197.1| Halocynthia roretzi mRNA for homologue of mammli... 40 6.9

>dbj|AK101300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033J17, full
           insert sequence
          Length = 1087

 Score =  375 bits (189), Expect = e-100
 Identities = 380/441 (86%), Gaps = 6/441 (1%)
 Strand = Plus / Minus

                                                                       
Query: 74  ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
           |||||||||||||||||||| ||  |||||||| ||||| || ||||| || || |||||
Sbjct: 834 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 775

                                                                       
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtggg 193
            ||||| ||||||||||| ||||| || || || |||| |||||| ||||| ||||| ||
Sbjct: 774 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgattgatcgtagg 715

                                                                       
Query: 194 gatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgaga 253
            | |||||| || || |||||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 714 aagccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtga 655

                                                                       
Query: 254 catgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaatt 313
           ||||||||  || || ||||||||||| |||||||||||| |||||| |||||| ||| |
Sbjct: 654 catgagagttcctagcgttgcttgagcatgtgatatcacattatccatctgtccagaact 595

                                                                       
Query: 314 cctgctgattgcagcttgttctctaagaagagcttgtt---ctgagtccccagactcttc 370
           ||| |||||||||||||||||||||||||||||||| |   ||||||| ||  |||| ||
Sbjct: 594 cctactgattgcagcttgttctctaagaagagcttgatcggctgagtctcc--actc-tc 538

                                                                       
Query: 371 cacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgctt 430
            || | |||||||||||||||||| ||||| | ||||||||| |||||||||||||||||
Sbjct: 537 aacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaagcatgttgttgctt 478

                                                                       
Query: 431 cactctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccat 490
           ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 477 cactctgaggcttgatcgaagccgatagaattcctgagtaagatcttgcaaaatctccat 418

                                
Query: 491 atgacgggttaatgtatgaga 511
           ||||||||| ||||| |||||
Sbjct: 417 atgacgggtcaatgtgtgaga 397



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 1   attatctgtactggcactgtgatccaaacttacaacac 38
           |||||||| |||| || |||||||||||||||||||||
Sbjct: 905 attatctgcactgacagtgtgatccaaacttacaacac 868



to top

>dbj|AK061283.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G01, full
           insert sequence
          Length = 1082

 Score =  375 bits (189), Expect = e-100
 Identities = 380/441 (86%), Gaps = 6/441 (1%)
 Strand = Plus / Minus

                                                                       
Query: 74  ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
           |||||||||||||||||||| ||  |||||||| ||||| || ||||| || || |||||
Sbjct: 841 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 782

                                                                       
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtggg 193
            ||||| ||||||||||| ||||| || || || |||| |||||| ||||| ||||| ||
Sbjct: 781 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgattgatcgtagg 722

                                                                       
Query: 194 gatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgaga 253
            | |||||| || || |||||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 721 aagccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtga 662

                                                                       
Query: 254 catgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaatt 313
           ||||||||  || || ||||||||||| |||||||||||| |||||| |||||| ||| |
Sbjct: 661 catgagagttcctagcgttgcttgagcatgtgatatcacattatccatctgtccagaact 602

                                                                       
Query: 314 cctgctgattgcagcttgttctctaagaagagcttgtt---ctgagtccccagactcttc 370
           ||| |||||||||||||||||||||||||||||||| |   ||||||| ||  |||| ||
Sbjct: 601 cctactgattgcagcttgttctctaagaagagcttgatcggctgagtctcc--actc-tc 545

                                                                       
Query: 371 cacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgctt 430
            || | |||||||||||||||||| ||||| | ||||||||| |||||||||||||||||
Sbjct: 544 aacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaagcatgttgttgctt 485

                                                                       
Query: 431 cactctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccat 490
           ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 484 cactctgaggcttgatcgaagccgatagaattcctgagtaagatcttgcaaaatctccat 425

                                
Query: 491 atgacgggttaatgtatgaga 511
           ||||||||| ||||| |||||
Sbjct: 424 atgacgggtcaatgtgtgaga 404



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 1   attatctgtactggcactgtgatccaaacttacaacac 38
           |||||||| |||| || |||||||||||||||||||||
Sbjct: 912 attatctgcactgacagtgtgatccaaacttacaacac 875



to top

>gb|AY106351.1| Zea mays PCO100185 mRNA sequence
          Length = 1179

 Score =  295 bits (149), Expect = 7e-77
 Identities = 357/426 (83%), Gaps = 3/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 74  ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
           |||||| |||| |||||||||||| || ||||||| ||| || || || ||||| |||||
Sbjct: 811 ctacttcgacagccagtagatgaagatgagaaacgtgcagacagatgcaacgagcgaaag 752

                                                                       
Query: 134 gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtggg 193
            |||||||| ||||| ||||||||||| |||||||| | ||||| ||| ||||| || ||
Sbjct: 751 aatgatggtatccatggatttcttccttctgatcgatgagaggacgtggttaattgttgg 692

                                                                       
Query: 194 gatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgaga 253
            | | ||||||||||||||||||| || |||||||||||||| || ||||| || || | 
Sbjct: 691 aagctggctgctgacgttgcttatctttgtagtgatgccaccgaatgttgaccgttgggt 632

                                                                       
Query: 254 catgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaatt 313
           ||||||||  || |||||||| |||||||||||||||||  |||||| |||||| | | |
Sbjct: 631 catgagagaaccaagtgttgcctgagcttgtgatatcacgttatccatctgtccagtact 572

                                                                       
Query: 314 cctgctgattgcagcttgttctctaagaagagcttgtt---ctgagtccccagactcttc 370
           |||||  || ||||||||||| || |||||| |||| |   |||||||    | ||| ||
Sbjct: 571 cctgccaatcgcagcttgttccctgagaagaacttgatcagctgagtctgacggctcctc 512

                                                                       
Query: 371 cacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgctt 430
            || | |||||||||||||||||| ||||||||||||||||| |||| ||| ||||| ||
Sbjct: 511 aacatcaaactttgctctgtcaaaatctctcaagtcaaggagagaagtatgctgttgttt 452

                                                                       
Query: 431 cactctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccat 490
             | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 451 tgccctgagacttgatcgaagccgatagaattcctgagtaaggtcttgcaaaatctccat 392

                 
Query: 491 atgacg 496
           ||||||
Sbjct: 391 atgacg 386



to top

>ref|XM_482607.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1021

 Score =  281 bits (142), Expect = 1e-72
 Identities = 363/437 (83%)
 Strand = Plus / Minus

                                                                       
Query: 75  tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
           |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 824 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 765

                                                                       
Query: 135 atgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtgggg 194
           || |||||||||||||||||||| ||  |||| || |  || || ||||||||||| |||
Sbjct: 764 ataatggtgtccatcgatttctttcttttgatggatgaaagaatttgattaatcgtaggg 705

                                                                       
Query: 195 atccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagac 254
           | ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||  ||
Sbjct: 704 agccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgcaac 645

                                                                       
Query: 255 atgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaattc 314
           || || | ||| | ||| |||||||||||||||||||| ||||||| ||| || | | ||
Sbjct: 644 ataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgcccagtactc 585

                                                                       
Query: 315 ctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttccacg 374
           |||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| || 
Sbjct: 584 ctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaaca 525

                                                                       
Query: 375 tnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttcact 434
           | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  ||
Sbjct: 524 tcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttgct 465

                                                                       
Query: 435 ctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccatatga 494
           || || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 464 ctaaggcttgatcggaggcgatagaattcctgtgtaaggtcttgcaatatctccatatga 405

                            
Query: 495 cgggttaatgtatgaga 511
           || || |||||||||||
Sbjct: 404 cgagtcaatgtatgaga 388



to top

>ref|XM_507241.1| PREDICTED Oryza sativa (japonica cultivar-group), P0524F03.27 mRNA
          Length = 1088

 Score =  281 bits (142), Expect = 1e-72
 Identities = 363/437 (83%)
 Strand = Plus / Minus

                                                                       
Query: 75  tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
           |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 883 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 824

                                                                       
Query: 135 atgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtgggg 194
           || |||||||||||||||||||| ||  |||| || |  || || ||||||||||| |||
Sbjct: 823 ataatggtgtccatcgatttctttcttttgatggatgaaagaatttgattaatcgtaggg 764

                                                                       
Query: 195 atccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagac 254
           | ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||  ||
Sbjct: 763 agccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgcaac 704

                                                                       
Query: 255 atgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaattc 314
           || || | ||| | ||| |||||||||||||||||||| ||||||| ||| || | | ||
Sbjct: 703 ataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgcccagtactc 644

                                                                       
Query: 315 ctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttccacg 374
           |||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| || 
Sbjct: 643 ctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaaca 584

                                                                       
Query: 375 tnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttcact 434
           | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  ||
Sbjct: 583 tcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttgct 524

                                                                       
Query: 435 ctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccatatga 494
           || || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 ctaaggcttgatcggaggcgatagaattcctgtgtaaggtcttgcaatatctccatatga 464

                            
Query: 495 cgggttaatgtatgaga 511
           || || |||||||||||
Sbjct: 463 cgagtcaatgtatgaga 447



to top

>dbj|AK102539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096J21, full
           insert sequence
          Length = 1088

 Score =  281 bits (142), Expect = 1e-72
 Identities = 363/437 (83%)
 Strand = Plus / Minus

                                                                       
Query: 75  tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
           |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 883 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 824

                                                                       
Query: 135 atgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtgggg 194
           || |||||||||||||||||||| ||  |||| || |  || || ||||||||||| |||
Sbjct: 823 ataatggtgtccatcgatttctttcttttgatggatgaaagaatttgattaatcgtaggg 764

                                                                       
Query: 195 atccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagac 254
           | ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||  ||
Sbjct: 763 agccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgcaac 704

                                                                       
Query: 255 atgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaattc 314
           || || | ||| | ||| |||||||||||||||||||| ||||||| ||| || | | ||
Sbjct: 703 ataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgcccagtactc 644

                                                                       
Query: 315 ctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttccacg 374
           |||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| || 
Sbjct: 643 ctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaaca 584

                                                                       
Query: 375 tnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttcact 434
           | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  ||
Sbjct: 583 tcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttgct 524

                                                                       
Query: 435 ctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccatatga 494
           || || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 ctaaggcttgatcggaggcgatagaattcctgtgtaaggtcttgcaatatctccatatga 464

                            
Query: 495 cgggttaatgtatgaga 511
           || || |||||||||||
Sbjct: 463 cgagtcaatgtatgaga 447



to top

>dbj|AK060959.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H08, full
           insert sequence
          Length = 1021

 Score =  281 bits (142), Expect = 1e-72
 Identities = 363/437 (83%)
 Strand = Plus / Minus

                                                                       
Query: 75  tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
           |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 824 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 765

                                                                       
Query: 135 atgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgattaatcgtgggg 194
           || |||||||||||||||||||| ||  |||| || |  || || ||||||||||| |||
Sbjct: 764 ataatggtgtccatcgatttctttcttttgatggatgaaagaatttgattaatcgtaggg 705

                                                                       
Query: 195 atccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagac 254
           | ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || ||  ||
Sbjct: 704 agccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgcaac 645

                                                                       
Query: 255 atgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgtccggaattc 314
           || || | ||| | ||| |||||||||||||||||||| ||||||| ||| || | | ||
Sbjct: 644 ataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgcccagtactc 585

                                                                       
Query: 315 ctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttccacg 374
           |||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| || 
Sbjct: 584 ctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaaca 525

                                                                       
Query: 375 tnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttcact 434
           | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  ||
Sbjct: 524 tcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttgct 465

                                                                       
Query: 435 ctgagacttgatcgaagccgatagaattcctgtgtaaggtcttgcaaaatctccatatga 494
           || || |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 464 ctaaggcttgatcggaggcgatagaattcctgtgtaaggtcttgcaatatctccatatga 405

                            
Query: 495 cgggttaatgtatgaga 511
           || || |||||||||||
Sbjct: 404 cgagtcaatgtatgaga 388



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  170 bits (86), Expect = 3e-39
 Identities = 151/170 (88%), Gaps = 6/170 (3%)
 Strand = Plus / Plus

                                                                            
Query: 300      acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
                |||||||| ||| |||| |||||||||||||||||||||||||||||||| ||   ||||
Sbjct: 14869847 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 14869906

                                                                            
Query: 357      tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
                || |||  |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 14869907 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 14869963

                                                                  
Query: 417      gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
                ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14869964 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 14870013



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                            
Query: 197      ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
                |||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 14867495 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 14867554

                                                            
Query: 257      gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
                |||||  || || ||||||||||| |||||||||||| ||||||
Sbjct: 14867555 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 14867598



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                            
Query: 74       ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
                |||||||||||||||||||| ||  |||||||| ||||| || ||||| || || |||||
Sbjct: 14867284 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 14867343

                                                                   
Query: 134      gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
                 ||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 14867344 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 14867394



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 463      cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
                |||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 14870258 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 14870306



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 1        attatctgtactggcactgtgatccaaacttacaacac 38
                |||||||| |||| || |||||||||||||||||||||
Sbjct: 14867213 attatctgcactgacagtgtgatccaaacttacaacac 14867250



to top

>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0707C02
          Length = 163609

 Score =  170 bits (86), Expect = 3e-39
 Identities = 151/170 (88%), Gaps = 6/170 (3%)
 Strand = Plus / Plus

                                                                          
Query: 300    acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
              |||||||| ||| |||| |||||||||||||||||||||||||||||||| ||   ||||
Sbjct: 155236 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 155295

                                                                          
Query: 357    tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
              || |||  |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 155296 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 155352

                                                                
Query: 417    gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
              ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 155353 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 155402



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                          
Query: 197    ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
              |||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 152884 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 152943

                                                          
Query: 257    gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
              |||||  || || ||||||||||| |||||||||||| ||||||
Sbjct: 152944 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 152987



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                          
Query: 74     ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
              |||||||||||||||||||| ||  |||||||| ||||| || ||||| || || |||||
Sbjct: 152673 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 152732

                                                                 
Query: 134    gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
               ||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 152733 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 152783



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                               
Query: 463    cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
              |||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 155647 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 155695



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 1      attatctgtactggcactgtgatccaaacttacaacac 38
              |||||||| |||| || |||||||||||||||||||||
Sbjct: 152602 attatctgcactgacagtgtgatccaaacttacaacac 152639



to top

>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0014G10
          Length = 164147

 Score =  170 bits (86), Expect = 3e-39
 Identities = 151/170 (88%), Gaps = 6/170 (3%)
 Strand = Plus / Plus

                                                                         
Query: 300   acctgtccggaattcctgctgattgcagcttgttctctaagaagagcttgttc---tgag 356
             |||||||| ||| |||| |||||||||||||||||||||||||||||||| ||   ||||
Sbjct: 78186 acctgtccagaactcctactgattgcagcttgttctctaagaagagcttgatcggctgag 78245

                                                                         
Query: 357   tccccagactcttccacgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaa 416
             || |||  |||| | || | |||||||||||||||||| ||||| | ||||||||| |||
Sbjct: 78246 tctcca--ctct-caacatcaaactttgctctgtcaaaatctcttaggtcaaggagcgaa 78302

                                                               
Query: 417   gcatgttgttgcttcactctgagacttgatcgaagccgatagaattcctg 466
             ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 78303 gcatgttgttgcttcactctgaggcttgatcgaagccgatagaattcctg 78352



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                         
Query: 197   ccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctgagacat 256
             |||||| || || |||||||| || ||||||||||||||||| ||||| || || |||||
Sbjct: 75834 ccggctactaacattgcttatctttgtagtgatgccaccaaatgttgatcgttgtgacat 75893

                                                         
Query: 257   gagagcgcccagtgttgcttgagcttgtgatatcacagtatcca 300
             |||||  || || ||||||||||| |||||||||||| ||||||
Sbjct: 75894 gagagttcctagcgttgcttgagcatgtgatatcacattatcca 75937



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                         
Query: 74    ctactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaag 133
             |||||||||||||||||||| ||  |||||||| ||||| || ||||| || || |||||
Sbjct: 75623 ctactttgacaaccagtagacgagaataagaaaggcgcagacagacgcgacaagtgaaag 75682

                                                                
Query: 134   gatgatggtgtccatcgatttcttcctcctgatcgacgtgaggatgtgatt 184
              ||||| ||||||||||| ||||| || || || |||| |||||| |||||
Sbjct: 75683 aatgattgtgtccatcgacttctttcttctaattgacgcgaggatatgatt 75733



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 463   cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
             |||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 78597 cctgagtaagatcttgcaaaatctccatatgacgggtcaatgtgtgaga 78645



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 1     attatctgtactggcactgtgatccaaacttacaacac 38
             |||||||| |||| || |||||||||||||||||||||
Sbjct: 75552 attatctgcactgacagtgtgatccaaacttacaacac 75589



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  125 bits (63), Expect = 2e-25
 Identities = 131/154 (85%)
 Strand = Plus / Plus

                                                                            
Query: 313      tcctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttcca 372
                |||||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| |
Sbjct: 21394195 tcctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaa 21394254

                                                                            
Query: 373      cgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttca 432
                | | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  
Sbjct: 21394255 catcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttg 21394314

                                                  
Query: 433      ctctgagacttgatcgaagccgatagaattcctg 466
                |||| || |||||||| || ||||||||||||||
Sbjct: 21394315 ctctaaggcttgatcggaggcgatagaattcctg 21394348



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 463      cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
                ||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 21394568 cctgtgtaaggtcttgcaatatctccatatgacgagtcaatgtatgaga 21394616



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 94/114 (82%)
 Strand = Plus / Plus

                                                                            
Query: 192      gggatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctga 251
                |||| ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || || 
Sbjct: 21393254 gggagccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgc 21393313

                                                                      
Query: 252      gacatgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgt 305
                 |||| || | ||| | ||| |||||||||||||||||||| ||||||| ||||
Sbjct: 21393314 aacataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgt 21393367



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 75       tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
                |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 21393043 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 21393102

                                       
Query: 135      atgatggtgtccatcgatttctt 157
                || ||||||||||||||||||||
Sbjct: 21393103 ataatggtgtccatcgatttctt 21393125



to top

>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0524F03
          Length = 167696

 Score =  125 bits (63), Expect = 2e-25
 Identities = 131/154 (85%)
 Strand = Plus / Plus

                                                                         
Query: 313   tcctgctgattgcagcttgttctctaagaagagcttgttctgagtccccagactcttcca 372
             |||||||||| |||||||||||| | || |||||||| || |||||  ||  |||||| |
Sbjct: 94120 tcctgctgatcgcagcttgttctttgagcagagcttgatcagagtcagcaccctcttcaa 94179

                                                                         
Query: 373   cgtnaaactttgctctgtcaaagtctctcaagtcaaggagggaagcatgttgttgcttca 432
             | | |||||| ||||||||||| |||||||||||||| || |||||||||||||||||  
Sbjct: 94180 catcaaacttcgctctgtcaaaatctctcaagtcaagaagagaagcatgttgttgctttg 94239

                                               
Query: 433   ctctgagacttgatcgaagccgatagaattcctg 466
             |||| || |||||||| || ||||||||||||||
Sbjct: 94240 ctctaaggcttgatcggaggcgatagaattcctg 94273



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                              
Query: 463   cctgtgtaaggtcttgcaaaatctccatatgacgggttaatgtatgaga 511
             ||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 94493 cctgtgtaaggtcttgcaatatctccatatgacgagtcaatgtatgaga 94541



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 94/114 (82%)
 Strand = Plus / Plus

                                                                         
Query: 192   gggatccggctgctgacgttgcttattttggtagtgatgccaccaaacgttgaacgctga 251
             |||| ||| ||||| ||||||||||| || ||||| || |||||||| ||||| || || 
Sbjct: 93179 gggagccgactgctaacgttgcttatcttcgtagtaataccaccaaatgttgatcgttgc 93238

                                                                   
Query: 252   gacatgagagcgcccagtgttgcttgagcttgtgatatcacagtatccacctgt 305
              |||| || | ||| | ||| |||||||||||||||||||| ||||||| ||||
Sbjct: 93239 aacataagtgtgcctaatgtagcttgagcttgtgatatcacggtatccatctgt 93292



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                         
Query: 75    tactttgacaaccagtagatgaacataagaaacgcgcacacggacgccacgagggaaagg 134
             |||||||||| ||| ||||| || |||||||| || || || || || || ||||| || 
Sbjct: 92968 tactttgacatccaatagataaaaataagaaatgcacaaacagatgcaaccagggataga 93027

                                    
Query: 135   atgatggtgtccatcgatttctt 157
             || ||||||||||||||||||||
Sbjct: 93028 ataatggtgtccatcgatttctt 93050



to top

>ref|XM_463968.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1095

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 129 gaaaggatgatggtgtccatcgatttcttcctcctgat 166
           ||||||||||| |||||| | |||||||||||| ||||
Sbjct: 789 gaaaggatgatagtgtcctttgatttcttcctcttgat 752



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 129     gaaaggatgatggtgtccatcgatttcttcctcctgat 166
               ||||||||||| |||||| | |||||||||||| ||||
Sbjct: 1404214 gaaaggatgatagtgtcctttgatttcttcctcttgat 1404177



to top

>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0482F12
          Length = 147735

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 129   gaaaggatgatggtgtccatcgatttcttcctcctgat 166
             ||||||||||| |||||| | |||||||||||| ||||
Sbjct: 85486 gaaaggatgatagtgtcctttgatttcttcctcttgat 85449



to top

>dbj|AK071820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B18, full
           insert sequence
          Length = 1094

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 129 gaaaggatgatggtgtccatcgatttcttcctcctgat 166
           ||||||||||| |||||| | |||||||||||| ||||
Sbjct: 789 gaaaggatgatagtgtcctttgatttcttcctcttgat 752



to top

>gb|AC122053.3| Mus musculus BAC clone RP24-463C3 from 3, complete sequence
          Length = 151640

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    aaacatcctcctactactttgaca 84
             |||||||||||| |||||||||||
Sbjct: 24532 aaacatcctccttctactttgaca 24509



to top

>gb|AE004385.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 42
            of 93 of the complete chromosome
          Length = 10054

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  gttgcttgagcttgtgatat 289
            ||||||||||||||||||||
Sbjct: 3285 gttgcttgagcttgtgatat 3266



to top

>emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 197322

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     agtagatgaacataagaaac 107
              ||||||||||||||||||||
Sbjct: 176529 agtagatgaacataagaaac 176510



to top

>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     gaattcctgctgattgcagc 328
               ||||||||||||||||||||
Sbjct: 1016972 gaattcctgctgattgcagc 1016991



to top

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    gaattcctgctgattgcagc 328
              ||||||||||||||||||||
Sbjct: 445093 gaattcctgctgattgcagc 445112



to top

>gb|AC123769.5| Homo sapiens chromosome 17, clone RP11-1086I4, complete sequence
          Length = 190245

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 379    actttgctctgtcaaagtctctca 402
              ||||||| ||||||||||||||||
Sbjct: 138490 actttgcactgtcaaagtctctca 138467



to top

>gb|AC024610.6| Homo sapiens chromosome 17, clone RP11-17M24, complete sequence
          Length = 176291

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 379   actttgctctgtcaaagtctctca 402
             ||||||| ||||||||||||||||
Sbjct: 70517 actttgcactgtcaaagtctctca 70494



to top

>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence
          Length = 166114

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   tgtaaggtcttgcaaaatct 486
             ||||||||||||||||||||
Sbjct: 98183 tgtaaggtcttgcaaaatct 98164



to top

>gb|AC093641.5| Homo sapiens BAC clone RP11-335N7 from 2, complete sequence
          Length = 43746

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   tgttgttgcttcactctgag 439
             ||||||||||||||||||||
Sbjct: 13671 tgttgttgcttcactctgag 13690



to top

>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete
              sequence
          Length = 176808

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    gattgcagcttgttctctaa 339
              ||||||||||||||||||||
Sbjct: 134484 gattgcagcttgttctctaa 134465



to top

>dbj|AB022197.1| Halocynthia roretzi mRNA for homologue of mammlian thyroid
            peroxidase, complete cds
          Length = 3179

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 340  gaagagcttgttctgagtccccag 363
            ||||| ||||||||||||||||||
Sbjct: 2566 gaagaacttgttctgagtccccag 2589


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,067,636
Number of Sequences: 3902068
Number of extensions: 4067636
Number of successful extensions: 69601
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69451
Number of HSP's gapped (non-prelim): 140
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top