ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197319.1| Oryza sativa (japonica cultivar-group) unknown ... 361 2e-96
2dbj|AK067223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96
3gb|AY107599.1| Zea mays PCO115272 mRNA sequence 212 1e-51
4gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 149 1e-32
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
7ref|NM_119632.2| Arabidopsis thaliana clathrin binding AT4G34660... 56 1e-04
8gb|AY096478.1| Arabidopsis thaliana unknown protein (At4g34660) ... 56 1e-04
9gb|AY072132.1| Arabidopsis thaliana unknown protein (At4g34660) ... 56 1e-04
10emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, ... 56 1e-04
11emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 56 1e-04
12emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BA... 56 1e-04
13gb|AF367774.1|AF367774 Arabidopsis thaliana SH3 domain-containin... 56 1e-04
14emb|BX827471.1|CNS0A3PF Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
15gb|AY087158.1| Arabidopsis thaliana clone 32357 mRNA, complete s... 56 1e-04
16gb|AC004129.2| Homo sapiens BAC clone CTB-136N17 from 7, complet... 44 0.52
17emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 ... 42 2.0
18gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, com... 42 2.0
19emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 ... 42 2.0
20emb|AL954206.1| Pan troglodytes chromosome 22 clone PTB-052N04 m... 42 2.0
21emb|AL954204.1| Pan troglodytes chromosome 22 clone PTB-051G08 m... 42 2.0
22emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 ... 42 2.0
23dbj|AK123925.1| Homo sapiens cDNA FLJ41931 fis, clone PERIC2004429 42 2.0
24ref|XM_693229.1| PREDICTED: Danio rerio similar to very large in... 42 2.0
25ref|XM_395099.2| PREDICTED: Apis mellifera similar to hypothetic... 42 2.0
26dbj|AP000034.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 42 2.0
27dbj|AP001713.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.0
28dbj|AP000264.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 2.0
29dbj|AP000177.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 2.0
30dbj|AP000101.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 42 2.0
31ref|XM_865092.1| PREDICTED: Bos taurus similar to Retinoblastoma... 40 8.1
32emb|BX649478.11| Zebrafish DNA sequence from clone DKEY-149F22 i... 40 8.1
33ref|XM_669295.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.1
34gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete s... 40 8.1
35emb|BX571661.1| Wolinella succinogenes, complete genome; segment... 40 8.1
36emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in ... 40 8.1
37gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.1
38emb|CT025756.17| Zebrafish DNA sequence from clone CH211-81M17 i... 40 8.1
39emb|AL773593.10| Zebrafish DNA sequence from clone CH211-202N20 ... 40 8.1
40emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chro... 40 8.1 
>ref|NM_197319.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0026L12.24), mRNA
          Length = 943

 Score =  361 bits (182), Expect = 2e-96
 Identities = 313/357 (87%)
 Strand = Plus / Minus

                                                                       
Query: 239 atgtatggctcaatgaacttctagaagacctgggcgactttgctcgccagtacacggtcc 298
           |||||||||||| |||||  ||||||||||||||||||||| || || || |||||||||
Sbjct: 732 atgtatggctcattgaacgcctagaagacctgggcgactttacttgcaagcacacggtcc 673

                                                                       
Query: 299 cgcttttcgatgaactcgtaagggaaccaaccagctttccccctgcactcaccttcagcc 358
           |  || |||||| | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 672 cttttctcgatgtagtcgtaagggaaccagccagctttccctctgcattcaccttctgcc 613

                                                                       
Query: 359 catccattgtttgacaccttccggaccactatgtagtcaccggttgccaggttgagctca 418
           |||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 612 catccattgtttgacaccttccggacaactatatagtcaccagctgccaggttgagctca 553

                                                                       
Query: 419 ntttcagtctcagctcggtatgactggatcgcctcagccaggaagtgctccactgtctcc 478
            ||||| ||||||| || || |||||||| |||||||||| ||||   ||||| || |||
Sbjct: 552 gtttcactctcagcacgataagactggatggcctcagccaagaagaattccacagtttcc 493

                                                                       
Query: 479 accaattcggcaactgttggagtcctcatgaatataccgttaacttcttcatatgaaggt 538
           |||||||| || ||||||||| |||||||||| | |||||||| ||||||||||||||||
Sbjct: 492 accaattcagcgactgttggattcctcatgaaaacaccgttaatttcttcatatgaaggt 433

                                                                    
Query: 539 ggcggtggcatagagttctcaatgactggaggaggtgctccttcaattctttggcgc 595
           || |||||||||||  ||||||   ||||||||||||||||||||||||||||||||
Sbjct: 432 ggtggtggcatagaactctcaacagctggaggaggtgctccttcaattctttggcgc 376
to top
>dbj|AK067223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097A14, full
            insert sequence
          Length = 1596

 Score =  361 bits (182), Expect = 2e-96
 Identities = 313/357 (87%)
 Strand = Plus / Minus

                                                                        
Query: 239  atgtatggctcaatgaacttctagaagacctgggcgactttgctcgccagtacacggtcc 298
            |||||||||||| |||||  ||||||||||||||||||||| || || || |||||||||
Sbjct: 1387 atgtatggctcattgaacgcctagaagacctgggcgactttacttgcaagcacacggtcc 1328

                                                                        
Query: 299  cgcttttcgatgaactcgtaagggaaccaaccagctttccccctgcactcaccttcagcc 358
            |  || |||||| | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 1327 cttttctcgatgtagtcgtaagggaaccagccagctttccctctgcattcaccttctgcc 1268

                                                                        
Query: 359  catccattgtttgacaccttccggaccactatgtagtcaccggttgccaggttgagctca 418
            |||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 1267 catccattgtttgacaccttccggacaactatatagtcaccagctgccaggttgagctca 1208

                                                                        
Query: 419  ntttcagtctcagctcggtatgactggatcgcctcagccaggaagtgctccactgtctcc 478
             ||||| ||||||| || || |||||||| |||||||||| ||||   ||||| || |||
Sbjct: 1207 gtttcactctcagcacgataagactggatggcctcagccaagaagaattccacagtttcc 1148

                                                                        
Query: 479  accaattcggcaactgttggagtcctcatgaatataccgttaacttcttcatatgaaggt 538
            |||||||| || ||||||||| |||||||||| | |||||||| ||||||||||||||||
Sbjct: 1147 accaattcagcgactgttggattcctcatgaaaacaccgttaatttcttcatatgaaggt 1088

                                                                     
Query: 539  ggcggtggcatagagttctcaatgactggaggaggtgctccttcaattctttggcgc 595
            || |||||||||||  ||||||   ||||||||||||||||||||||||||||||||
Sbjct: 1087 ggtggtggcatagaactctcaacagctggaggaggtgctccttcaattctttggcgc 1031
to top
>gb|AY107599.1| Zea mays PCO115272 mRNA sequence
          Length = 1413

 Score =  212 bits (107), Expect = 1e-51
 Identities = 270/324 (83%), Gaps = 3/324 (0%)
 Strand = Plus / Minus

                                                                        
Query: 272  gcgactttgctcgccagtacacggtcccgcttttcgatgaactcgtaagggaaccaacca 331
            |||||||| || || || ||||| || || || |||||| | ||||| |||||||| |||
Sbjct: 1203 gcgactttacttgcaagcacacgctctcgtttctcgatgtagtcgtaggggaaccagcca 1144

                                                                        
Query: 332  gctttccccctgcactcaccttcagcccatccattgtttgacaccttccggaccactatg 391
            ||| |||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 1143 gctctccccctgcattcaccttcggcccatccattgttcgacacctttcggaccactatg 1084

                                                                        
Query: 392  tagtcaccggttgccaggttgagctcantttcagtctcagctcggtatgactggatcgcc 451
            |||||||| | ||  |||||||||||| | ||  |||| ||||| ||||| ||||| |||
Sbjct: 1083 tagtcaccagctgaaaggttgagctcagtgtcgctctctgctcgatatgattggattgcc 1024

                                                                        
Query: 452  tcagccaggaagtgctccactgtctccaccaattcggcaactgttggagtcctcatgaat 511
            ||||||||||| | |||||| ||||| ||||| || || || ||   | |||||||||||
Sbjct: 1023 tcagccaggaaatactccacggtctcgaccaactctgcgaccgt---attcctcatgaat 967

                                                                        
Query: 512  ataccgttaacttcttcatatgaaggtggcggtggcatagagttctcaatgactggagga 571
            ||||| || ||||||||||||| ||| || || ||||| ||  ||||||  || ||||||
Sbjct: 966  ataccattgacttcttcatatgcaggcggtggaggcatggaactctcaaccaccggagga 907

                                    
Query: 572  ggtgctccttcaattctttggcgc 595
            ||||| ||||||||||||||||||
Sbjct: 906  ggtgccccttcaattctttggcgc 883
to top
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
              sequence
          Length = 152172

 Score =  149 bits (75), Expect = 1e-32
 Identities = 123/139 (88%)
 Strand = Plus / Minus

                                                                          
Query: 239    atgtatggctcaatgaacttctagaagacctgggcgactttgctcgccagtacacggtcc 298
              |||||||||||| |||||  ||||||||||||||||||||| || || || |||||||||
Sbjct: 143695 atgtatggctcattgaacgcctagaagacctgggcgactttacttgcaagcacacggtcc 143636

                                                                          
Query: 299    cgcttttcgatgaactcgtaagggaaccaaccagctttccccctgcactcaccttcagcc 358
              |  || |||||| | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 143635 cttttctcgatgtagtcgtaagggaaccagccagctttccctctgcattcaccttctgcc 143576

                                 
Query: 359    catccattgtttgacacct 377
              |||||||||||||||||||
Sbjct: 143575 catccattgtttgacacct 143557



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                          
Query: 450    cctcagccaggaagtgctccactgtctccaccaattcggcaactgttggagtcctcatga 509
              ||||||||| ||||   ||||| || ||||||||||| || ||||||||| |||||||||
Sbjct: 143250 cctcagccaagaagaattccacagtttccaccaattcagcgactgttggattcctcatga 143191

                                                                          
Query: 510    atataccgttaacttcttcatatgaaggtggcggtggcatagagttctcaatgactggag 569
              | | |||||||| |||||||||||||||||| |||||||||||  ||||||   ||||||
Sbjct: 143190 aaacaccgttaatttcttcatatgaaggtggtggtggcatagaactctcaacagctggag 143131

                                        
Query: 570    gaggtgctccttcaattctttggcgc 595
              ||||||||||||||||||||||||||
Sbjct: 143130 gaggtgctccttcaattctttggcgc 143105



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                          
Query: 374    accttccggaccactatgtagtcaccggttgccaggttgagctcantttcagtctcagct 433
              ||||||||||| ||||| |||||||| | |||||||||||||||| ||||| ||||||| 
Sbjct: 143447 accttccggacaactatatagtcaccagctgccaggttgagctcagtttcactctcagca 143388

                                 
Query: 434    cggtatgactggatcgcct 452
              || || |||||||| ||||
Sbjct: 143387 cgataagactggatggcct 143369
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  149 bits (75), Expect = 1e-32
 Identities = 123/139 (88%)
 Strand = Plus / Plus

                                                                            
Query: 239      atgtatggctcaatgaacttctagaagacctgggcgactttgctcgccagtacacggtcc 298
                |||||||||||| |||||  ||||||||||||||||||||| || || || |||||||||
Sbjct: 19232686 atgtatggctcattgaacgcctagaagacctgggcgactttacttgcaagcacacggtcc 19232745

                                                                            
Query: 299      cgcttttcgatgaactcgtaagggaaccaaccagctttccccctgcactcaccttcagcc 358
                |  || |||||| | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 19232746 cttttctcgatgtagtcgtaagggaaccagccagctttccctctgcattcaccttctgcc 19232805

                                   
Query: 359      catccattgtttgacacct 377
                |||||||||||||||||||
Sbjct: 19232806 catccattgtttgacacct 19232824



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Plus

                                                                            
Query: 450      cctcagccaggaagtgctccactgtctccaccaattcggcaactgttggagtcctcatga 509
                ||||||||| ||||   ||||| || ||||||||||| || ||||||||| |||||||||
Sbjct: 19233131 cctcagccaagaagaattccacagtttccaccaattcagcgactgttggattcctcatga 19233190

                                                                            
Query: 510      atataccgttaacttcttcatatgaaggtggcggtggcatagagttctcaatgactggag 569
                | | |||||||| |||||||||||||||||| |||||||||||  ||||||   ||||||
Sbjct: 19233191 aaacaccgttaatttcttcatatgaaggtggtggtggcatagaactctcaacagctggag 19233250

                                          
Query: 570      gaggtgctccttcaattctttggcgc 595
                ||||||||||||||||||||||||||
Sbjct: 19233251 gaggtgctccttcaattctttggcgc 19233276



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                            
Query: 374      accttccggaccactatgtagtcaccggttgccaggttgagctcantttcagtctcagct 433
                ||||||||||| ||||| |||||||| | |||||||||||||||| ||||| ||||||| 
Sbjct: 19232934 accttccggacaactatatagtcaccagctgccaggttgagctcagtttcactctcagca 19232993

                                   
Query: 434      cggtatgactggatcgcct 452
                || || |||||||| ||||
Sbjct: 19232994 cgataagactggatggcct 19233012
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  149 bits (75), Expect = 1e-32
 Identities = 123/139 (88%)
 Strand = Plus / Plus

                                                                            
Query: 239      atgtatggctcaatgaacttctagaagacctgggcgactttgctcgccagtacacggtcc 298
                |||||||||||| |||||  ||||||||||||||||||||| || || || |||||||||
Sbjct: 19243962 atgtatggctcattgaacgcctagaagacctgggcgactttacttgcaagcacacggtcc 19244021

                                                                            
Query: 299      cgcttttcgatgaactcgtaagggaaccaaccagctttccccctgcactcaccttcagcc 358
                |  || |||||| | |||||||||||||| ||||||||||| ||||| |||||||| |||
Sbjct: 19244022 cttttctcgatgtagtcgtaagggaaccagccagctttccctctgcattcaccttctgcc 19244081

                                   
Query: 359      catccattgtttgacacct 377
                |||||||||||||||||||
Sbjct: 19244082 catccattgtttgacacct 19244100



 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Plus

                                                                            
Query: 450      cctcagccaggaagtgctccactgtctccaccaattcggcaactgttggagtcctcatga 509
                ||||||||| ||||   ||||| || ||||||||||| || ||||||||| |||||||||
Sbjct: 19244407 cctcagccaagaagaattccacagtttccaccaattcagcgactgttggattcctcatga 19244466

                                                                            
Query: 510      atataccgttaacttcttcatatgaaggtggcggtggcatagagttctcaatgactggag 569
                | | |||||||| |||||||||||||||||| |||||||||||  ||||||   ||||||
Sbjct: 19244467 aaacaccgttaatttcttcatatgaaggtggtggtggcatagaactctcaacagctggag 19244526

                                          
Query: 570      gaggtgctccttcaattctttggcgc 595
                ||||||||||||||||||||||||||
Sbjct: 19244527 gaggtgctccttcaattctttggcgc 19244552



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                            
Query: 374      accttccggaccactatgtagtcaccggttgccaggttgagctcantttcagtctcagct 433
                ||||||||||| ||||| |||||||| | |||||||||||||||| ||||| ||||||| 
Sbjct: 19244210 accttccggacaactatatagtcaccagctgccaggttgagctcagtttcactctcagca 19244269

                                   
Query: 434      cggtatgactggatcgcct 452
                || || |||||||| ||||
Sbjct: 19244270 cgataagactggatggcct 19244288
to top
>ref|NM_119632.2| Arabidopsis thaliana clathrin binding AT4G34660 mRNA, complete cds
          Length = 1610

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1205 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1158
to top
>gb|AY096478.1| Arabidopsis thaliana unknown protein (At4g34660) mRNA, complete cds
          Length = 1138

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1049 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1002
to top
>gb|AY072132.1| Arabidopsis thaliana unknown protein (At4g34660) mRNA, complete cds
          Length = 1639

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1207 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1160
to top
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82
          Length = 195165

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 317 taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
           |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 431 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 478
to top
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 317    taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
              |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 191352 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 191399
to top
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project)
          Length = 125502

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 317   taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
             |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 81663 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 81710
to top
>gb|AF367774.1|AF367774 Arabidopsis thaliana SH3 domain-containing protein 2 mRNA, complete
            cds
          Length = 1594

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1212 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1165
to top
>emb|BX827471.1|CNS0A3PF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS59ZH07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1526

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1203 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1156
to top
>gb|AY087158.1| Arabidopsis thaliana clone 32357 mRNA, complete sequence
          Length = 1595

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 317  taagggaaccaaccagctttccccctgcactcaccttcagcccatcca 364
            |||||||||||||||||||| ||  |||| |||||||| |||||||||
Sbjct: 1190 taagggaaccaaccagctttgcctttgcattcaccttcggcccatcca 1143
to top
>gb|AC004129.2| Homo sapiens BAC clone CTB-136N17 from 7, complete sequence
          Length = 162701

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 91     atgaggcacaaaaagccatcca 112
              ||||||||||||||||||||||
Sbjct: 147761 atgaggcacaaaaagccatcca 147740
to top
>emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 map q21.1, complete
             sequence
          Length = 174216

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 50919 ctttccccctgcactcacctt 50939
to top
>gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, complete sequence
          Length = 126502

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 339   ccctgcactcaccttcagccc 359
             |||||||||||||||||||||
Sbjct: 60559 ccctgcactcaccttcagccc 60539
to top
>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3,
             complete sequence
          Length = 162642

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   cactgatcaacgtctttggag 197
             |||||||||||||||||||||
Sbjct: 76046 cactgatcaacgtctttggag 76066
to top
>emb|AL954206.1| Pan troglodytes chromosome 22 clone PTB-052N04 map q21.1, complete
            sequence
          Length = 153753

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 333  ctttccccctgcactcacctt 353
            |||||||||||||||||||||
Sbjct: 988  ctttccccctgcactcacctt 1008
to top
>emb|AL954204.1| Pan troglodytes chromosome 22 clone PTB-051G08 map q21.1, complete
             sequence
          Length = 146898

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 83982 ctttccccctgcactcacctt 84002
to top
>emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 map q21.1, complete
              sequence
          Length = 206110

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    ctttccccctgcactcacctt 353
              |||||||||||||||||||||
Sbjct: 150480 ctttccccctgcactcacctt 150500
to top
>dbj|AK123925.1| Homo sapiens cDNA FLJ41931 fis, clone PERIC2004429
          Length = 1834

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  ccctgcactcaccttcagccc 359
            |||||||||||||||||||||
Sbjct: 1566 ccctgcactcaccttcagccc 1546
to top
>ref|XM_693229.1| PREDICTED: Danio rerio similar to very large inducible GTPase-1
            (LOC569821), mRNA
          Length = 4881

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 177  cactgatcaacgtctttggag 197
            |||||||||||||||||||||
Sbjct: 2774 cactgatcaacgtctttggag 2794
to top
>ref|XM_395099.2| PREDICTED: Apis mellifera similar to hypothetical protein
            (LOC411630), mRNA
          Length = 2757

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 574  tgctccttcaattctttggcg 594
            |||||||||||||||||||||
Sbjct: 1022 tgctccttcaattctttggcg 1002
to top
>dbj|AP000034.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 5/28, complete
             sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 93843 ctttccccctgcactcacctt 93823
to top
>dbj|AP001713.1| Homo sapiens genomic DNA, chromosome 21q, section 57/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    ctttccccctgcactcacctt 353
              |||||||||||||||||||||
Sbjct: 180217 ctttccccctgcactcacctt 180237
to top
>dbj|AP000264.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:T1844, complete sequence
          Length = 60455

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 51170 ctttccccctgcactcacctt 51190
to top
>dbj|AP000177.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 4/21, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 43056 ctttccccctgcactcacctt 43076
to top
>dbj|AP000101.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 4/20
          Length = 100000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   ctttccccctgcactcacctt 353
             |||||||||||||||||||||
Sbjct: 43056 ctttccccctgcactcacctt 43076
to top
>ref|XM_865092.1| PREDICTED: Bos taurus similar to Retinoblastoma-binding protein 9
            (RBBP-9) (B5T overexpressed gene protein) (Bog protein),
            transcript variant 3 (LOC513835), mRNA
          Length = 2345

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 136  aaagaacatatatagaacaa 155
            ||||||||||||||||||||
Sbjct: 2245 aaagaacatatatagaacaa 2226
to top
>emb|BX649478.11| Zebrafish DNA sequence from clone DKEY-149F22 in linkage group 8,
             complete sequence
          Length = 79414

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   actcaccttcagcccatcca 364
             ||||||||||||||||||||
Sbjct: 30537 actcaccttcagcccatcca 30518
to top
>ref|XM_669295.1| Plasmodium berghei strain ANKA hypothetical protein (PB000865.01.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 140 aacatatatagaacaaaaggaatt 163
           ||||||||||||||||||| ||||
Sbjct: 715 aacatatatagaacaaaagaaatt 738
to top
>gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete sequence
          Length = 125734

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   acaacgccaaggacatgtat 244
             ||||||||||||||||||||
Sbjct: 13431 acaacgccaaggacatgtat 13412
to top
>emb|BX571661.1| Wolinella succinogenes, complete genome; segment 5/7
          Length = 346613

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   ccagctttccccctgcactc 348
             ||||||||||||||||||||
Sbjct: 68165 ccagctttccccctgcactc 68184
to top
>emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in linkage group 3,
             complete sequence
          Length = 192468

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ttataatgcacattgtacaa 228
             ||||||||||||||||||||
Sbjct: 26340 ttataatgcacattgtacaa 26321
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 509    aatataccgttaacttcttc 528
              ||||||||||||||||||||
Sbjct: 536996 aatataccgttaacttcttc 536977
to top
>emb|CT025756.17| Zebrafish DNA sequence from clone CH211-81M17 in linkage group 22,
             complete sequence
          Length = 162828

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gaacattataatgcacattg 223
             ||||||||||||||||||||
Sbjct: 23664 gaacattataatgcacattg 23645
to top
>emb|AL773593.10| Zebrafish DNA sequence from clone CH211-202N20 in linkage group 5,
             complete sequence
          Length = 202726

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gaacattataatgcacattg 223
             ||||||||||||||||||||
Sbjct: 83767 gaacattataatgcacattg 83786
to top
>emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chromosome 2, complete
             sequence
          Length = 189104

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    agtcagtgtcatatttgggg 54
             ||||||||||||||||||||
Sbjct: 41786 agtcagtgtcatatttgggg 41805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,795,873
Number of Sequences: 3902068
Number of extensions: 4795873
Number of successful extensions: 97836
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97666
Number of HSP's gapped (non-prelim): 170
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top