ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26n05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15232.1|TAPGKCYT Wheat mRNA for cytosolic phosphoglycerate kinase (EC 2.7.2.3) Length = 1473 Score = 208 bits (105), Expect = 6e-51 Identities = 215/246 (87%), Gaps = 9/246 (3%) Strand = Plus / Minus Query: 24 aagttgataatttattncacgactcatc--ctagcaaaaattgtcgacaagcctttctca 81 |||||||||||| ||| ||||||||||| ||||||||||||| |||||||||| ||||| Sbjct: 1439 aagttgataatt-att-cacgactcatctactagcaaaaattggcgacaagcctatctca 1382 Query: 82 aggtt-cctggggacatactataacgttgcagcgttacaccaanatgagatcccaaacaa 140 | ||| ||| |||||||| ||||||| |||||||||||| | |||||||||||||||| Sbjct: 1381 aagtttccttgggacata---taacgttccagcgttacaccgagatgagatcccaaacaa 1325 Query: 141 aagga-cacgcagcgagctcataggcgaaaccaaatcaacctacgcctngtcaagggcaa 199 |||| |||||||| |||| ||||| |||||| ||||||||||||||| ||||||||||| Sbjct: 1324 aaggggcacgcagcaagctgataggtgaaaccgaatcaacctacgcctcgtcaagggcaa 1265 Query: 200 gaacacctgggaggggcttgccttccagcagctccnntttcgcaccgccaccggtcgaaa 259 ||||||| ||||||||||||||||||||||||||| |||| || || ||||| |||| Sbjct: 1264 gaacaccagggaggggcttgccttccagcagctccaagctcgcgccaccgccggtggaaa 1205 Query: 260 tgtggc 265 |||||| Sbjct: 1204 tgtggc 1199
>ref|XM_464267.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1543 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 1284 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 1240
>gb|DQ083209.1| Oryza sativa (indica cultivar-group) clone 7S9H35 mRNA sequence Length = 405 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 170 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 126
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 3730955 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 3730911 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tcatcctagcaaaaattgtc 66 |||||||||||||||||||| Sbjct: 12103585 tcatcctagcaaaaattgtc 12103604
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 71272 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 71228
>dbj|AK100371.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084G06, full insert sequence Length = 2568 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 2296 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 2252
>dbj|AK070041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036N24, full insert sequence Length = 1543 Score = 73.8 bits (37), Expect = 2e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 190 tcaagggcaagaacacctgggaggggcttgccttccagcagctcc 234 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 1284 tcaagggcaagaacacctgggagggtcttgccttccagcaactcc 1240
>gb|BT016355.1| Zea mays clone Contig188 mRNA sequence Length = 1600 Score = 46.1 bits (23), Expect = 0.056 Identities = 60/73 (82%) Strand = Plus / Plus Query: 193 agggcaagaacacctgggaggggcttgccttccagcagctccnntttcgcaccgccaccg 252 |||||||| ||||| || || | ||||||||||| || ||| |||||||||| ||| Sbjct: 294 agggcaaggacaccaggtagagtcttgccttccaagagttccaagctcgcaccgccgccg 353 Query: 253 gtcgaaatgtggc 265 ||||||||||||| Sbjct: 354 gtcgaaatgtggc 366
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 46.1 bits (23), Expect = 0.056 Identities = 23/23 (100%) Strand = Plus / Plus Query: 240 cgcaccgccaccggtcgaaatgt 262 ||||||||||||||||||||||| Sbjct: 5677224 cgcaccgccaccggtcgaaatgt 5677246
>gb|AY103553.1| Zea mays PCO152527 mRNA sequence Length = 1856 Score = 46.1 bits (23), Expect = 0.056 Identities = 60/73 (82%) Strand = Plus / Minus Query: 193 agggcaagaacacctgggaggggcttgccttccagcagctccnntttcgcaccgccaccg 252 |||||||| ||||| || || | ||||||||||| || ||| |||||||||| ||| Sbjct: 1407 agggcaaggacaccaggtagagtcttgccttccaagagttccaagctcgcaccgccgccg 1348 Query: 253 gtcgaaatgtggc 265 ||||||||||||| Sbjct: 1347 gtcgaaatgtggc 1335
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 gcaccgccaccggtcgaaatgt 262 |||||||||||||||||||||| Sbjct: 5469837 gcaccgccaccggtcgaaatgt 5469858
>dbj|AK140768.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130012K06 product:hypothetical protein, full insert sequence Length = 3666 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 1985 agaacacctgggaggggcttgc 1964
>dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1003G16 product:zinc fingers and homeoboxes 3, full insert sequence Length = 9067 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 7580 agaacacctgggaggggcttgc 7601
>dbj|AK161741.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830436K02 product:zinc fingers and homeoboxes 3, full insert sequence Length = 4238 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 2809 agaacacctgggaggggcttgc 2830
>dbj|AK007902.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810059C13 product:zinc fingers and homeoboxes 3, full insert sequence Length = 1825 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 445 agaacacctgggaggggcttgc 466
>dbj|AK122271.1| Mus musculus mRNA for mKIAA0395 protein Length = 6425 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 5044 agaacacctgggaggggcttgc 5065
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete sequence Length = 207901 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 199 agaacacctgggaggggcttgc 220 |||||||||||||||||||||| Sbjct: 37081 agaacacctgggaggggcttgc 37060
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cgcaccgccaccggtcgaaat 260 ||||||||||||||||||||| Sbjct: 430300 cgcaccgccaccggtcgaaat 430280
>emb|AL589723.7| Human DNA sequence from clone RP11-204B7 on chromosome 6 Contains the TPMT gene for thiopurine S-methyltransferase, the gene for a novel protein similar to (TAT-interactive protein, 72-KD; tripartite motif protein TRIM32; zinc-finger protein HT2A), complete sequence Length = 147927 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aagaacacctgggaggggct 217 |||||||||||||||||||| Sbjct: 55606 aagaacacctgggaggggct 55625
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 gggaggggcttgccttccagcagc 231 |||||||||||||| ||||||||| Sbjct: 445541 gggaggggcttgccatccagcagc 445564
>dbj|AP005476.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0026D20 Length = 130634 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tcatcctagcaaaaattgtc 66 |||||||||||||||||||| Sbjct: 51890 tcatcctagcaaaaattgtc 51909 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,626,633 Number of Sequences: 3902068 Number of extensions: 1626633 Number of successful extensions: 26804 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26723 Number of HSP's gapped (non-prelim): 79 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
