ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26m24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full... 192 7e-46
2ref|XM_472733.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
3gb|AY652735.1| Oryza sativa (japonica cultivar-group) somatic em... 121 2e-24
4emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 121 2e-24
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AK099777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7dbj|AK105892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
8dbj|AK061767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
9emb|AJ277702.1|ZMA277702 Zea mays mRNA for SERK1 protein 111 2e-21
10emb|AJ400868.1|ZMA400868 Zea mays serk1 gene for somatic embryog... 111 2e-21
11emb|AJ277703.1|ZMA277703 Zea mays mRNA for SERK2 protein 62 2e-06
12emb|AJ400869.1|ZMA400869 Zea mays serk2 gene for somatic embryog... 62 2e-06
13gb|AY110115.1| Zea mays CL444_1 mRNA sequence 62 2e-06
14gb|BT009223.1| Triticum aestivum clone wle1n.pk0076.d4:fis, full... 52 0.002
15gb|AY491745.1| Trypanosoma rangeli isolate SC58 18S ribosomal RN... 48 0.025
16gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, com... 46 0.099
17gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.1
19gb|AY524043.1| Micromonospora echinospora ATCC 15835 gentamicin ... 40 6.1
20gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 6.1
21emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in ... 40 6.1
22emb|AJ575934.2|MPU575934 Micromonospora purpurea DOS biosyntheti... 40 6.1
23gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, comp... 40 6.1
24emb|AJ628149.4| Micromonospora echinospora genomic region of the... 40 6.1
25gb|AC149587.5| Mus musculus BAC clone RP23-472J13 from 5, comple... 40 6.1 
>gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full insert mRNA
            sequence
          Length = 2298

 Score =  192 bits (97), Expect = 7e-46
 Identities = 174/201 (86%), Gaps = 8/201 (3%)
 Strand = Plus / Minus

                                                                        
Query: 260  tctgtctgtcatcatgtacaaaagagagctagaaattctgcaacgaggggctgtccggag 319
            |||||| |||||||||||||||||||||||| |||||||| ||||||| |||| | ||||
Sbjct: 2116 tctgtcggtcatcatgtacaaaagagagctaaaaattctgaaacgaggcgctgcctggag 2057

                                                                        
Query: 320  cct------caggagacggttttgttttcttcannnnnnncctgttacctcgggccggac 373
            | |      ||||||||| ||||||||| |||        ||||||||||||||||||||
Sbjct: 2056 cttgtcgatcaggagacgattttgttttgttc--ttttttcctgttacctcgggccggac 1999

                                                                        
Query: 374  agctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgtcgcggagcc 433
            ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||
Sbjct: 1998 agctccaccgcccggaggttgtaggtggagtcgacgatccagtcgttgtttcgcggggcc 1939

                                 
Query: 434  agctccgcctcctgccggacc 454
            |||||||||||||||||||||
Sbjct: 1938 agctccgcctcctgccggacc 1918
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>ref|XM_472733.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1887

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                        
Query: 358  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 1887 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 1828

                                                 
Query: 418  gttgtgtcgcggagccagctccgcctcctgccggacc 454
            |||||| || || ||||||||||||||||||||||||
Sbjct: 1827 gttgtggcggggggccagctccgcctcctgccggacc 1791
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>gb|AY652735.1| Oryza sativa (japonica cultivar-group) somatic embryogenesis protein
            kinase 1 mRNA, complete cds
          Length = 2380

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                        
Query: 358  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 2007 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 1948

                                                 
Query: 418  gttgtgtcgcggagccagctccgcctcctgccggacc 454
            |||||| || || ||||||||||||||||||||||||
Sbjct: 1947 gttgtggcggggggccagctccgcctcctgccggacc 1911
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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                         
Query: 358   ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
             |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 51112 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 51171

                                                  
Query: 418   gttgtgtcgcggagccagctccgcctcctgccggacc 454
             |||||| || || ||||||||||||||||||||||||
Sbjct: 51172 gttgtggcggggggccagctccgcctcctgccggacc 51208
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                            
Query: 358      ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
                |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 22842337 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 22842396

                                                     
Query: 418      gttgtgtcgcggagccagctccgcctcctgccggacc 454
                |||||| || || ||||||||||||||||||||||||
Sbjct: 22842397 gttgtggcggggggccagctccgcctcctgccggacc 22842433
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>dbj|AK099777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095F19, full
            insert sequence
          Length = 2296

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                        
Query: 358  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 2089 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 2030

                                                 
Query: 418  gttgtgtcgcggagccagctccgcctcctgccggacc 454
            |||||| || || ||||||||||||||||||||||||
Sbjct: 2029 gttgtggcggggggccagctccgcctcctgccggacc 1993
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>dbj|AK105892.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E09, full
           insert sequence
          Length = 1161

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                       
Query: 358 ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
           |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 832 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 773

                                                
Query: 418 gttgtgtcgcggagccagctccgcctcctgccggacc 454
           |||||| || || ||||||||||||||||||||||||
Sbjct: 772 gttgtggcggggggccagctccgcctcctgccggacc 736
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>dbj|AK061767.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B11, full
           insert sequence
          Length = 1161

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                       
Query: 358 ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
           |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 832 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 773

                                                
Query: 418 gttgtgtcgcggagccagctccgcctcctgccggacc 454
           |||||| || || ||||||||||||||||||||||||
Sbjct: 772 gttgtggcggggggccagctccgcctcctgccggacc 736
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>emb|AJ277702.1|ZMA277702 Zea mays mRNA for SERK1 protein
          Length = 2068

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 359  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 418
            ||||||||||||||||| || || |||| ||||||| | |||||||||||||||||||||
Sbjct: 1877 tacctcgggccggacagttcgacggccctgaggttgtaggtggagtcgacgatccagtcg 1818

                                            
Query: 419  ttgtgtcgcggagccagctccgcctcctgccg 450
            ||||| ||||| || |||||||||||||||||
Sbjct: 1817 ttgtggcgcggggcgagctccgcctcctgccg 1786
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>emb|AJ400868.1|ZMA400868 Zea mays serk1 gene for somatic embryogenesis receptor-like kinase 1,
            exons 1-11
          Length = 5715

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 359  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 418
            ||||||||||||||||| || || |||| ||||||| | |||||||||||||||||||||
Sbjct: 4993 tacctcgggccggacagttcgacggccctgaggttgtaggtggagtcgacgatccagtcg 4934

                                            
Query: 419  ttgtgtcgcggagccagctccgcctcctgccg 450
            ||||| ||||| || |||||||||||||||||
Sbjct: 4933 ttgtggcgcggggcgagctccgcctcctgccg 4902
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>emb|AJ277703.1|ZMA277703 Zea mays mRNA for SERK2 protein
          Length = 2077

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 359  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            ||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 1886 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtc 1828
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>emb|AJ400869.1|ZMA400869 Zea mays serk2 gene for somatic embryogenesis receptor-like kinase 2,
            exons 1-11
          Length = 5484

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 359  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            ||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 5019 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtc 4961
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>gb|AY110115.1| Zea mays CL444_1 mRNA sequence
          Length = 2474

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 359  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 417
            ||||| ||||||||||||||||| || || |||||| | ||||| ||||||||||||||
Sbjct: 2114 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtc 2056
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>gb|BT009223.1| Triticum aestivum clone wle1n.pk0076.d4:fis, full insert mRNA
            sequence
          Length = 1651

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                        
Query: 365  gggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgt 424
            ||||| ||||| ||||| || ||||||||  | |||||||| || |||||||||||| | 
Sbjct: 1368 gggccagacagttccacggcgcggaggttatatgtggagtcaacaatccagtcgttgcga 1309

                                          
Query: 425  cgcggagccagctccgcctcctgccggacc 454
             | ||||||| ||| |||||||||| ||||
Sbjct: 1308 agaggagccaactctgcctcctgcctgacc 1279
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>gb|AY491745.1| Trypanosoma rangeli isolate SC58 18S ribosomal RNA gene, partial
           sequence
          Length = 875

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 44  cgtacaaacaaaacaatacagcag 67
           ||||||||||||||||||||||||
Sbjct: 414 cgtacaaacaaaacaatacagcag 391
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>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence
          Length = 275200

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 51     acaaaacaatacagcaggatttagcac 77
              ||||| |||||||||||||||||||||
Sbjct: 119605 acaaatcaatacagcaggatttagcac 119579
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 431     gccagctccgcctcctgccgg 451
               |||||||||||||||||||||
Sbjct: 4036418 gccagctccgcctcctgccgg 4036438
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 429     gagccagctccgcctcctgccgga 452
               ||||||||||||| ||||||||||
Sbjct: 2284559 gagccagctccgcttcctgccgga 2284536
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>gb|AY524043.1| Micromonospora echinospora ATCC 15835 gentamicin biosynthesis gene
             cluster, complete sequence
          Length = 38146

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   cagctccgcctcctgccgga 452
             ||||||||||||||||||||
Sbjct: 30386 cagctccgcctcctgccgga 30405
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 47    acaaacaaaacaatacagcaggatttag 74
             ||||||||||||| |||||| |||||||
Sbjct: 68360 acaaacaaaacaaaacagcatgatttag 68333
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>emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in linkage group 5, complete
              sequence
          Length = 205281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ggactctgtctgtcatcatg 275
              ||||||||||||||||||||
Sbjct: 169143 ggactctgtctgtcatcatg 169124
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>emb|AJ575934.2|MPU575934 Micromonospora purpurea DOS biosynthetic gene cluster
          Length = 32668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  cagctccgcctcctgccgga 452
            ||||||||||||||||||||
Sbjct: 6107 cagctccgcctcctgccgga 6088
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>gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, complete sequence
          Length = 128624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 286    agctagaaattctgcaacgagggg 309
              |||||||||||||| |||||||||
Sbjct: 101989 agctagaaattctgaaacgagggg 102012
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>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin
             biosynthesis gene cluster, strain DSM 43036
          Length = 84222

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   cagctccgcctcctgccgga 452
             ||||||||||||||||||||
Sbjct: 42630 cagctccgcctcctgccgga 42649
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>gb|AC149587.5| Mus musculus BAC clone RP23-472J13 from 5, complete sequence
          Length = 188522

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ccagctccgcctcctgccgg 451
             ||||||||||||||||||||
Sbjct: 92333 ccagctccgcctcctgccgg 92314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,865,816
Number of Sequences: 3902068
Number of extensions: 4865816
Number of successful extensions: 95719
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95619
Number of HSP's gapped (non-prelim): 100
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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