ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190786.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
2gb|DQ408431.1| Oryza sativa (indica cultivar-group) serine kinas... 70 7e-09
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
4dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
5dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
6dbj|AB125305.1| Oryza sativa (japonica cultivar-group) SAPK4 mRN... 70 7e-09
7dbj|AK070407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
8gb|DQ427217.1| Sorghum propinquum locus C0086 genomic sequence 60 7e-06
9gb|DQ427216.1| Sorghum bicolor voucher PI585454 locus C0086 geno... 60 7e-06
10gb|DQ427215.1| Sorghum bicolor voucher PI267539 locus C0086 geno... 60 7e-06
11gb|DQ427214.1| Sorghum bicolor voucher PI267408 locus C0086 geno... 60 7e-06
12gb|DQ427213.1| Sorghum bicolor voucher PI221607 locus C0086 geno... 60 7e-06
13gb|DQ427212.1| Sorghum bicolor voucher PI152702 locus C0086 geno... 60 7e-06
14gb|DQ427211.1| Sorghum bicolor voucher NSL92371 locus C0086 geno... 60 7e-06
15gb|DQ427210.1| Sorghum bicolor voucher NSL87902 locus C0086 geno... 60 7e-06
16gb|DQ427209.1| Sorghum bicolor voucher NSL87666 locus C0086 geno... 60 7e-06
17gb|DQ427208.1| Sorghum bicolor voucher NSL77217 locus C0086 geno... 60 7e-06
18gb|DQ427207.1| Sorghum bicolor voucher NSL77034 locus C0086 geno... 60 7e-06
19gb|DQ427206.1| Sorghum bicolor voucher NSL56174 locus C0086 geno... 60 7e-06
20gb|DQ427205.1| Sorghum bicolor voucher NSL56003 locus C0086 geno... 60 7e-06
21gb|DQ427204.1| Sorghum bicolor voucher NSL55243 locus C0086 geno... 60 7e-06
22gb|DQ427203.1| Sorghum bicolor voucher NSL51365 locus C0086 geno... 60 7e-06
23gb|DQ427202.1| Sorghum bicolor voucher NSL51030 locus C0086 geno... 60 7e-06
24gb|DQ427201.1| Sorghum bicolor voucher NSL50875 locus C0086 geno... 60 7e-06
25gb|DQ427200.1| Sorghum bicolor voucher BTx623 locus C0086 genomi... 60 7e-06
26gb|AY107766.1| Zea mays PCO126350 mRNA sequence 60 7e-06
27dbj|AK060576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
28gb|AY106406.1| Zea mays PCO126351 mRNA sequence 52 0.002
29ref|XM_784065.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.11
30gb|AY351984.1| Rattus norvegicus karyopherin alpha 1/importin al... 44 0.43
31ref|NM_198726.1| Rattus norvegicus karyopherin (importin) alpha ... 44 0.43
32gb|AC102430.9| Mus musculus chromosome 14, clone RP24-103F5, com... 42 1.7
33gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosom... 42 1.7
34emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in... 42 1.7
35gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, com... 42 1.7
36emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 i... 42 1.7
37gb|AC157945.2| Mus musculus BAC clone RP23-289C11 from chromosom... 42 1.7
38gb|AC163692.4| Mus musculus BAC clone RP24-68H1 from chromosome ... 42 1.7
39gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosom... 40 6.7
40gb|AC183300.4| Pan troglodytes BAC clone CH251-263P14 from chrom... 40 6.7
41gb|AC121772.2| Mus musculus BAC clone RP23-349L11 from 3, comple... 40 6.7
42gb|AY425004.1| Homo sapiens estrogen receptor 1 (ESR1) gene, com... 40 6.7
43gb|AC137668.18| Medicago truncatula clone mth2-5f8, complete seq... 40 6.7
44emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5 40 6.7
45emb|AL590993.14| Human DNA sequence from clone RP11-450E24 on ch... 40 6.7
46emb|AL096843.11|HSA262A13 Human DNA sequence from clone RP11-262... 40 6.7
47gb|AC160129.2| Mus musculus BAC clone RP23-253N17 from chromosom... 40 6.7
48gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete s... 40 6.7
49dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.7
50gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence 40 6.7
51gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, comple... 40 6.7
52emb|AJ310470.1|MHO310470 Mycobacterium holsaticum internal trans... 40 6.7
53emb|AJ310468.1|MHO310468 Mycobacterium holsaticum internal trans... 40 6.7
54emb|AL928644.12| Mouse DNA sequence from clone RP23-313J15 on ch... 40 6.7
55emb|AL935121.9| Mouse DNA sequence from clone RP23-432M14 on chr... 40 6.7
56gb|AC131779.4| Mus musculus BAC clone RP24-336D11 from 8, comple... 40 6.7
57dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.7
58gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, comp... 40 6.7
59gb|AC103936.9| Mus musculus chromosome 9, clone RP24-361K14, com... 40 6.7 
>ref|NM_190786.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 426 cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
           ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 927 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 868

              
Query: 486 ctg 488
           |||
Sbjct: 867 ctg 865



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 269  atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
            ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 1081 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 1030
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>gb|DQ408431.1| Oryza sativa (indica cultivar-group) serine kinase mRNA, complete
           cds
          Length = 1083

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 426 cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
           ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 927 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 868

              
Query: 486 ctg 488
           |||
Sbjct: 867 ctg 865



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 269  atatgcgtagcgagctcatgcggagctctccgcttgcatggacctc 314
            ||||||| || ||||||||||||||||| ||||| |||||||||||
Sbjct: 1081 atatgcgcagtgagctcatgcggagctccccgctcgcatggacctc 1036
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 426      cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
                ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 37707743 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 37707684

                   
Query: 486      ctg 488
                |||
Sbjct: 37707683 ctg 37707681



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 269      atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
                ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 37707897 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 37707846
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                          
Query: 426    cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
              ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 168217 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 168158

                 
Query: 486    ctg 488
              |||
Sbjct: 168157 ctg 168155



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 269    atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
              ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 168371 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 168320
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>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039A07
          Length = 148892

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 426   cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
             ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 36044 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 35985

                
Query: 486   ctg 488
             |||
Sbjct: 35984 ctg 35982



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 269   atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
             ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 36198 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 36147
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>dbj|AB125305.1| Oryza sativa (japonica cultivar-group) SAPK4 mRNA for
            serine/threonine protein kinase SAPK4, complete cds
          Length = 1493

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 426  cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
            ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 1123 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 1064

               
Query: 486  ctg 488
            |||
Sbjct: 1063 ctg 1061



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 269  atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
            ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 1277 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 1226
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>dbj|AK070407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050C24, full
           insert sequence
          Length = 865

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 426 cctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttcctctgaggt 485
           ||||||||| ||||||||||| ||||| || || |||||||||||||| || ||||||||
Sbjct: 468 cctggatgatttcggcatggttcttgcttcttgaacaatcttcatgatctcttctgaggt 409

              
Query: 486 ctg 488
           |||
Sbjct: 408 ctg 406



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 269 atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
           ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 622 atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 571
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>gb|DQ427217.1| Sorghum propinquum locus C0086 genomic sequence
          Length = 756

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 514 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 465



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| |||||||||||||||||||||||
Sbjct: 652 cggagttctccgcttgcatggacctcctt 624
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>gb|DQ427216.1| Sorghum bicolor voucher PI585454 locus C0086 genomic sequence
          Length = 748

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 506 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 457



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 644 cggagttctccgcttgcatggacttcctt 616
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>gb|DQ427215.1| Sorghum bicolor voucher PI267539 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427214.1| Sorghum bicolor voucher PI267408 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427213.1| Sorghum bicolor voucher PI221607 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427212.1| Sorghum bicolor voucher PI152702 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427211.1| Sorghum bicolor voucher NSL92371 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427210.1| Sorghum bicolor voucher NSL87902 locus C0086 genomic sequence
          Length = 748

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 506 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 457



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 644 cggagttctccgcttgcatggacttcctt 616
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>gb|DQ427209.1| Sorghum bicolor voucher NSL87666 locus C0086 genomic sequence
          Length = 748

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 506 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 457



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 644 cggagttctccgcttgcatggacttcctt 616
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>gb|DQ427208.1| Sorghum bicolor voucher NSL77217 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427207.1| Sorghum bicolor voucher NSL77034 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427206.1| Sorghum bicolor voucher NSL56174 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427205.1| Sorghum bicolor voucher NSL56003 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427204.1| Sorghum bicolor voucher NSL55243 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427203.1| Sorghum bicolor voucher NSL51365 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427202.1| Sorghum bicolor voucher NSL51030 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427201.1| Sorghum bicolor voucher NSL50875 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|DQ427200.1| Sorghum bicolor voucher BTx623 locus C0086 genomic sequence
          Length = 745

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 503 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 454



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| ||||||||||||||||| |||||
Sbjct: 641 cggagttctccgcttgcatggacttcctt 613
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>gb|AY107766.1| Zea mays PCO126350 mRNA sequence
          Length = 830

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 427 ctggatgacttcggcatggtccttgcctcctggacaatcttcatgatttc 476
           |||||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct: 666 ctggatgatttcggcatggtccttgcatcttgaactatcttcatgatttc 617



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 289 cggagctctccgcttgcatggacctcctt 317
           ||||| |||||||||||||||||||||||
Sbjct: 804 cggagttctccgcttgcatggacctcctt 776
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>dbj|AK060576.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D12, full
           insert sequence
          Length = 271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 269 atatgcgtagcgagctcatgcggagctctccgcttgcatggacctccttgac 320
           ||||||| || |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 65  atatgcgcagtgagctcatacggagctccccgctcgcatggacctctttgac 14
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>gb|AY106406.1| Zea mays PCO126351 mRNA sequence
          Length = 1552

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 439  ggcatggtccttgcctcctggacaatcttcatgatttc 476
            |||| ||| |||||||||| ||||||||||||||||||
Sbjct: 1100 ggcaaggttcttgcctccttgacaatcttcatgatttc 1063
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>ref|XM_784065.1| PREDICTED: Strongylocentrotus purpuratus similar to caudal type
           homeo box transcription factor 4 (LOC584191), partial
           mRNA
          Length = 1167

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 104 atattacagcattcatcaagccc 126
           |||||||||||||||||||||||
Sbjct: 886 atattacagcattcatcaagccc 908
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>gb|AY351984.1| Rattus norvegicus karyopherin alpha 1/importin alpha 5 (Kpna1) mRNA,
            complete cds
          Length = 4975

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 153  aggaaccaaaaccaaagagaagcaaa 178
            ||||| ||||||||||||||||||||
Sbjct: 2465 aggaaacaaaaccaaagagaagcaaa 2440
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>ref|NM_198726.1| Rattus norvegicus karyopherin (importin) alpha 1 (Kpna1), mRNA
          Length = 4975

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 153  aggaaccaaaaccaaagagaagcaaa 178
            ||||| ||||||||||||||||||||
Sbjct: 2465 aggaaacaaaaccaaagagaagcaaa 2440
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>gb|AC102430.9| Mus musculus chromosome 14, clone RP24-103F5, complete sequence
          Length = 153864

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 176  aaacttccagcaaaaattgca 196
            |||||||||||||||||||||
Sbjct: 8901 aaacttccagcaaaaattgca 8921
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>gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosome 9, complete sequence
          Length = 187995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   caaaaccaaagagaagcaaac 179
             |||||||||||||||||||||
Sbjct: 20987 caaaaccaaagagaagcaaac 20967
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>emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in linkage group 24,
              complete sequence
          Length = 192113

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    ccaaaaccaaagagaagcaaa 178
              |||||||||||||||||||||
Sbjct: 106539 ccaaaaccaaagagaagcaaa 106519
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>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence
          Length = 155221

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    ggactgggtttctcactgtca 46
             |||||||||||||||||||||
Sbjct: 59728 ggactgggtttctcactgtca 59748
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>emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24,
             complete sequence
          Length = 202872

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   ccaaaaccaaagagaagcaaa 178
             |||||||||||||||||||||
Sbjct: 64021 ccaaaaccaaagagaagcaaa 64001
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>gb|AC157945.2| Mus musculus BAC clone RP23-289C11 from chromosome 9, complete sequence
          Length = 216396

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    caaaaccaaagagaagcaaac 179
              |||||||||||||||||||||
Sbjct: 133042 caaaaccaaagagaagcaaac 133022
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>gb|AC163692.4| Mus musculus BAC clone RP24-68H1 from chromosome 14, complete sequence
          Length = 224333

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   aaacttccagcaaaaattgca 196
             |||||||||||||||||||||
Sbjct: 29225 aaacttccagcaaaaattgca 29205
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>gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosome 8, complete sequence
          Length = 182604

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   caaagagaagcaaacttcca 184
             ||||||||||||||||||||
Sbjct: 23326 caaagagaagcaaacttcca 23307
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>gb|AC183300.4| Pan troglodytes BAC clone CH251-263P14 from chromosome 4, complete
             sequence
          Length = 171121

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   accaaagagaagcaaacttccagc 186
             |||||||||||| |||||||||||
Sbjct: 82454 accaaagagaaggaaacttccagc 82431
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>gb|AC121772.2| Mus musculus BAC clone RP23-349L11 from 3, complete sequence
          Length = 201923

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    atgtacataagttttcctct 91
             ||||||||||||||||||||
Sbjct: 32085 atgtacataagttttcctct 32066
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>gb|AY425004.1| Homo sapiens estrogen receptor 1 (ESR1) gene, complete cds
          Length = 299637

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tttatatgtacataagtttt 86
             ||||||||||||||||||||
Sbjct: 78544 tttatatgtacataagtttt 78563
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>gb|AC137668.18| Medicago truncatula clone mth2-5f8, complete sequence
          Length = 133085

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tttatatgtacataagtttt 86
             ||||||||||||||||||||
Sbjct: 77502 tttatatgtacataagtttt 77521
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>emb|X62669.1|MMHOX4 M.musculus genes HOX-4.4 and Hox-4.5
          Length = 8601

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 156  aaccaaaaccaaagagaagcaaac 179
            ||||||||||||||||||| ||||
Sbjct: 3893 aaccaaaaccaaagagaagaaaac 3870
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>emb|AL590993.14| Human DNA sequence from clone RP11-450E24 on chromosome 6 Contains the
             part of the ESR1 gene for estrogen receptor 1 and a CpG
             island, complete sequence
          Length = 139687

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tttatatgtacataagtttt 86
             ||||||||||||||||||||
Sbjct: 60470 tttatatgtacataagtttt 60489
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>emb|AL096843.11|HSA262A13 Human DNA sequence from clone RP11-262A13 on chromosome 22, complete
             sequence
          Length = 128155

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tggactgggtttctcactgt 44
             ||||||||||||||||||||
Sbjct: 11699 tggactgggtttctcactgt 11680
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>gb|AC160129.2| Mus musculus BAC clone RP23-253N17 from chromosome 9, complete sequence
          Length = 205094

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    aaaaccaaagagaagcaaac 179
              ||||||||||||||||||||
Sbjct: 141370 aaaaccaaagagaagcaaac 141389
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>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence
          Length = 129617

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   ttacaggaaccaaaaccaaa 168
             ||||||||||||||||||||
Sbjct: 59115 ttacaggaaccaaaaccaaa 59134
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    acaggaaccaaaaccaaagagaag 174
              ||||||||||||||||||| ||||
Sbjct: 878403 acaggaaccaaaaccaaagcgaag 878426
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>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
          Length = 214875

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    aaccaaaaccaaagagaagcaaac 179
              ||||||||||||||||||| ||||
Sbjct: 132373 aaccaaaaccaaagagaagaaaac 132350
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>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence
          Length = 83528

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   acttccagcaaaaattgcat 197
             ||||||||||||||||||||
Sbjct: 13903 acttccagcaaaaattgcat 13922
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>emb|AJ310470.1|MHO310470 Mycobacterium holsaticum internal transcribed spacer 1 (ITS1),
           strain 5050
          Length = 369

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 caaaaattgcattacccaac 205
           ||||||||||||||||||||
Sbjct: 340 caaaaattgcattacccaac 321
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>emb|AJ310468.1|MHO310468 Mycobacterium holsaticum internal transcribed spacer 1 (ITS1),
           strain 1406
          Length = 379

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 caaaaattgcattacccaac 205
           ||||||||||||||||||||
Sbjct: 350 caaaaattgcattacccaac 331
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>emb|AL928644.12| Mouse DNA sequence from clone RP23-313J15 on chromosome 2, complete
              sequence
          Length = 219870

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    aaccaaaaccaaagagaagcaaac 179
              ||||||||||||||||||| ||||
Sbjct: 180434 aaccaaaaccaaagagaagaaaac 180411
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>emb|AL935121.9| Mouse DNA sequence from clone RP23-432M14 on chromosome 2, complete
             sequence
          Length = 106940

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   aggaaccaaaaccaaagagaagca 176
             |||| |||||||||||||||||||
Sbjct: 24867 aggagccaaaaccaaagagaagca 24890
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>gb|AC131779.4| Mus musculus BAC clone RP24-336D11 from 8, complete sequence
          Length = 171978

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    caaagagaagcaaacttcca 184
              ||||||||||||||||||||
Sbjct: 156346 caaagagaagcaaacttcca 156327
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>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 141   aaattacgttacaggaaccaaaaccaaa 168
             |||||| |||||||| ||||||||||||
Sbjct: 46277 aaattaggttacagggaccaaaaccaaa 46304
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>gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, complete sequence
          Length = 160659

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    caaagagaagcaaacttcca 184
              ||||||||||||||||||||
Sbjct: 153006 caaagagaagcaaacttcca 153025
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>gb|AC103936.9| Mus musculus chromosome 9, clone RP24-361K14, complete sequence
          Length = 184968

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    aaaaccaaagagaagcaaac 179
              ||||||||||||||||||||
Sbjct: 157119 aaaaccaaagagaagcaaac 157100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,272,129
Number of Sequences: 3902068
Number of extensions: 3272129
Number of successful extensions: 62572
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62442
Number of HSP's gapped (non-prelim): 130
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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