>SPOT_MYCPN (P75386) Probable guanosine-3',5'-bis(diphosphate)|
           3'-pyrophosphohydrolase (EC 3.1.7.2) ((ppGpp)ase)
           (Penta-phosphate guanosine-3'-pyrophosphohydrolase)
          Length = 733

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = -2

Query: 204 RPRDFCCQALIFTVWQDTAVNKSI-----SNTLCKTVAPRCQKNCHLGHLEAKTFFQQMH 40
           RPR F CQ  I  VW +T VNK +      ++  + + P+  K      L    F    H
Sbjct: 653 RPRKFRCQINIRGVWSETTVNKIVQTIIEGDSYLERIIPKIDKQKDEFELNITMFIDNYH 712

>HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD protein)|
          Length = 3144

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 119  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 211
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1584 HQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1614

>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3148

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 119  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 211
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1577 HQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1607

>RIF1_YEAST (P29539) Protein RIF1 (RAP1-interacting factor 1)|
          Length = 1916

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
 Frame = +2

Query: 155  SCHTVNIRAWQQKSRGLAEKSKSCKPRNHW*NS---CNIQSTGRQRYS*PLQAIQVPSSL 325
            S + +N +++ Q +    +  K  +P N   N+   CN++     R   P   IQ+PS  
Sbjct: 1559 SMNKINSKSFTQDNIAQYKSVKKARPNNEGENNDYACNVEQASPVRNEVPGDGIQIPSGT 1618

Query: 326  LRFS----TSKTELDSNKATSNIEGRLLQ 400
            +  +    T K+++D  ++  +  G + Q
Sbjct: 1619 ILLNSSKQTEKSKVDDLRSDEDEHGTVAQ 1647

>ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like protein 3)|
          Length = 317

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 361 KQSDLQHRRTPSPSSQNTHHKS 426
           +QS ++  R+PSPS++ THH+S
Sbjct: 191 RQSTMRSARSPSPSARGTHHRS 212

>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3119

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 119  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 211
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1562 HQVLEMFILVLQQCHKENEDKWKRLSRQVAD 1592

>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3110

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 119  HNVLEMLLLTAVSCHTVNIRAWQQKSRGLAE 211
            H VLEM +L    CH  N   W++ SR +A+
Sbjct: 1553 HQVLEMFILVLQQCHKENEDKWKRLSRQVAD 1583

>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 293 PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 427
           PL ++ +PS  LRFS+S T   S+K TS         AK    KV
Sbjct: 29  PLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKV 73

>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor|
           (CP22)
          Length = 276

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 293 PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 427
           PL ++ +PS  LRFS+S T   S+K TS         AK    KV
Sbjct: 29  PLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKV 73

>SALM_DROME (P39770) Homeotic protein spalt-major|
          Length = 1365

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 328 EVFNQQNRIRLKQSDLQHRRTPSPSSQNT---HHKSVHIYCQP 447
           E   +Q +++ +   ++ RRTPSPSS++    HH+  H+   P
Sbjct: 643 ERVEEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPP 685

>YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I|
          Length = 521

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 420 VMCVLAAWRRRPSMLEVALFESNSVLLV 337
           V+ VL AWR   SML V +FE+   LLV
Sbjct: 192 VLLVLIAWRPEGSMLSVRIFETAVALLV 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,485,948
Number of Sequences: 219361
Number of extensions: 1842300
Number of successful extensions: 4604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4604
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)