ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26m17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009085.1| Triticum aestivum clone wkm1c.pk005.m16:fis, full... 731 0.0
2ref|NM_188586.1| Oryza sativa (japonica cultivar-group), predic... 220 4e-54
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
4dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
5dbj|AK061358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 9e-52
6gb|AY110530.1| Zea mays CL17960_1 mRNA sequence 119 1e-23
7ref|XM_420151.1| PREDICTED: Gallus gallus similar to Burkitt lym... 44 0.46
8gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, co... 44 0.46
9emb|CR387150.1| Gallus gallus finished cDNA, clone ChEST270p1 44 0.46
10emb|CR352716.1| Gallus gallus finished cDNA, clone ChEST39n5 44 0.46
11emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, comple... 42 1.8
12gb|AC175311.1| Medicago truncatula clone mth2-45n8, complete seq... 42 1.8
13ref|XM_691209.1| PREDICTED: Danio rerio similar to Mucin-2 precu... 42 1.8
14ref|NM_069384.2| Caenorhabditis elegans F25H8.6 (F25H8.6) mRNA, ... 42 1.8
15emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in... 42 1.8
16ref|NM_125333.3| Arabidopsis thaliana oxysterol binding AT5G5942... 40 7.2
17gb|AC150416.2| Branchiostoma floridae clone CH302-63L21, complet... 40 7.2
18gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.2
19gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, com... 40 7.2
20emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in ... 40 7.2
21gb|AC148398.10| Medicago truncatula clone mth2-24c23, complete s... 40 7.2
22gb|AC150203.13| Medicago truncatula clone mth2-65b23, complete s... 40 7.2
23gb|BC103729.1| Rattus norvegicus cDNA clone IMAGE:7460363, **** ... 40 7.2
24emb|BX883048.1| Rattus norvegicus chromosome 20, major histocomp... 40 7.2
25emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
26gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 7.2
27gb|AC145796.2| Xenopus tropicalis clone CH216-19K4, complete seq... 40 7.2
28gb|AY054473.1| Arabidopsis thaliana oxysterol-binding protein (A... 40 7.2
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
30emb|BX830371.1|CNS0A03Y Arabidopsis thaliana Full-length cDNA Co... 40 7.2
31gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Canc... 40 7.2
32ref|NM_212500.1| Rattus norvegicus guanine nucleotide binding pr... 40 7.2
33dbj|AB025604.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.2
34emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in... 40 7.2
35emb|BX294367.7| Mouse DNA sequence from clone RP23-472I18 on chr... 40 7.2
36emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chrom... 40 7.2
37emb|AL606443.3|OSJN00008 Oryza sativa genomic DNA, chromosome 4,... 40 7.2 
>gb|BT009085.1| Triticum aestivum clone wkm1c.pk005.m16:fis, full insert mRNA
           sequence
          Length = 654

 Score =  731 bits (369), Expect = 0.0
 Identities = 486/523 (92%), Gaps = 14/523 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  aatacagtgaatactcgttaaaaaatacgtgctctgcaggttaaacaaacagcatgaaca 78
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 621 aatacagtgaatactcgttaaaaa-tacgcgctctgcaggttaaacaaacagcatgaaca 563

                                                                       
Query: 79  aatgctcgattacgaaacaaaaagttaaacgagagcattgccttctcatcg-----aagt 133
           |||||||| |||| |||||||||| |||||||||||||||||||||||||      ||||
Sbjct: 562 aatgctcggttacaaaacaaaaagctaaacgagagcattgccttctcatctcattaaagt 503

                                                                       
Query: 134 tgtggaaaaaagaatgatca-tctccacatgacagtgatgcccagtatcgctggccacca 192
           ||||||||||| || ||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 502 tgtggaaaaaacaaagatcaatctccacatgacagtgacgcccagtattgctggccacca 443

                                                                       
Query: 193 gaactccacataaacagatgatgcctgctggcagcaactgatatacttcctggatatatc 252
           |||||||||||||||||       | ||||||||||| ||||||||| ||||||||||||
Sbjct: 442 gaactccacataaacag-------ccgctggcagcaagtgatatactccctggatatatc 390

                                                                       
Query: 253 agtcaaaatgacggaagctaacttctggtcaagcgtcttcttcaatcatgattcagatca 312
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtgaaaacgacggaagctaacttctggtcaagcgtcttcttcaatcatgattcagatca 330

                                                                       
Query: 313 ggcgttgctcttctggtcttcaattttcttctggaacgatgggaaccattgcttccaagc 372
            |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 329 agcgttgctcttctggtcttcgattttcttctggaacgatgtgaaccattgcttccaagc 270

                                                                       
Query: 373 cgcatctccttgctgctcgatccaagacaagaaacaactgtctaacaggcagaacaagtt 432
           ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 269 cgcgtctccttgttgctcgatccaagacaagaaacagctgtctaacaggcagaacaagtt 210

                                                                       
Query: 433 cacgtaaagcagttgatatcgcacgggaatgaagcggaagtttgcgatctgcacagccgg 492
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 209 cacgtacagcagttgatatcgcacgggaatgaagcgaaagtttgcgatctgcacagccgg 150

                                                      
Query: 493 ccagatggctccccctaaaactagagcaggaatgatatccctc 535
           ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 149 ccagatggctccccctaaaaccagagcaggaatgatatccctc 107
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>ref|NM_188586.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 669

 Score =  220 bits (111), Expect = 4e-54
 Identities = 168/187 (89%)
 Strand = Plus / Minus

                                                                       
Query: 341 ttctggaacgatgggaaccattgcttccaagccgcatctccttgctgctcgatccaagac 400
           |||||||| |||| |||||||||||||||||  ||||||||||| || |||||||| |||
Sbjct: 641 ttctggaatgatgtgaaccattgcttccaaggtgcatctccttgttgatcgatccacgac 582

                                                                       
Query: 401 aagaaacaactgtctaacaggcagaacaagttcacgtaaagcagttgatatcgcacggga 460
           ||||| ||||||||||| |||||||||| |||||||||||| || ||||||||||| |||
Sbjct: 581 aagaagcaactgtctaagaggcagaacaggttcacgtaaaggagctgatatcgcacagga 522

                                                                       
Query: 461 atgaagcggaagtttgcgatctgcacagccggccagatggctccccctaaaactagagca 520
           ||||||||||| |||||||| ||||| || |||||||||| |||||||| ||||||||||
Sbjct: 521 atgaagcggaaatttgcgatttgcacggctggccagatggttccccctagaactagagca 462

                  
Query: 521 ggaatga 527
           |||||||
Sbjct: 461 ggaatga 455
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  220 bits (111), Expect = 4e-54
 Identities = 168/187 (89%)
 Strand = Plus / Plus

                                                                           
Query: 341     ttctggaacgatgggaaccattgcttccaagccgcatctccttgctgctcgatccaagac 400
               |||||||| |||| |||||||||||||||||  ||||||||||| || |||||||| |||
Sbjct: 7085168 ttctggaatgatgtgaaccattgcttccaaggtgcatctccttgttgatcgatccacgac 7085227

                                                                           
Query: 401     aagaaacaactgtctaacaggcagaacaagttcacgtaaagcagttgatatcgcacggga 460
               ||||| ||||||||||| |||||||||| |||||||||||| || ||||||||||| |||
Sbjct: 7085228 aagaagcaactgtctaagaggcagaacaggttcacgtaaaggagctgatatcgcacagga 7085287

                                                                           
Query: 461     atgaagcggaagtttgcgatctgcacagccggccagatggctccccctaaaactagagca 520
               ||||||||||| |||||||| ||||| || |||||||||| |||||||| ||||||||||
Sbjct: 7085288 atgaagcggaaatttgcgatttgcacggctggccagatggttccccctagaactagagca 7085347

                      
Query: 521     ggaatga 527
               |||||||
Sbjct: 7085348 ggaatga 7085354
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score =  220 bits (111), Expect = 4e-54
 Identities = 168/187 (89%)
 Strand = Plus / Plus

                                                                         
Query: 341   ttctggaacgatgggaaccattgcttccaagccgcatctccttgctgctcgatccaagac 400
             |||||||| |||| |||||||||||||||||  ||||||||||| || |||||||| |||
Sbjct: 72748 ttctggaatgatgtgaaccattgcttccaaggtgcatctccttgttgatcgatccacgac 72807

                                                                         
Query: 401   aagaaacaactgtctaacaggcagaacaagttcacgtaaagcagttgatatcgcacggga 460
             ||||| ||||||||||| |||||||||| |||||||||||| || ||||||||||| |||
Sbjct: 72808 aagaagcaactgtctaagaggcagaacaggttcacgtaaaggagctgatatcgcacagga 72867

                                                                         
Query: 461   atgaagcggaagtttgcgatctgcacagccggccagatggctccccctaaaactagagca 520
             ||||||||||| |||||||| ||||| || |||||||||| |||||||| ||||||||||
Sbjct: 72868 atgaagcggaaatttgcgatttgcacggctggccagatggttccccctagaactagagca 72927

                    
Query: 521   ggaatga 527
             |||||||
Sbjct: 72928 ggaatga 72934
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>dbj|AK061358.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B09, full
           insert sequence
          Length = 991

 Score =  212 bits (107), Expect = 9e-52
 Identities = 167/187 (89%)
 Strand = Plus / Minus

                                                                       
Query: 341 ttctggaacgatgggaaccattgcttccaagccgcatctccttgctgctcgatccaagac 400
           |||||||| |||| |||||||||||||||||  ||||||||||| || |||||||| |||
Sbjct: 696 ttctggaatgatgtgaaccattgcttccaaggtgcatctccttgttgatcgatccacgac 637

                                                                       
Query: 401 aagaaacaactgtctaacaggcagaacaagttcacgtaaagcagttgatatcgcacggga 460
           ||||| ||||||||||| |||||||||| |||||||||||| || ||||||||||| | |
Sbjct: 636 aagaagcaactgtctaagaggcagaacaggttcacgtaaaggagctgatatcgcacagaa 577

                                                                       
Query: 461 atgaagcggaagtttgcgatctgcacagccggccagatggctccccctaaaactagagca 520
           ||||||||||| |||||||| ||||| || |||||||||| |||||||| ||||||||||
Sbjct: 576 atgaagcggaaatttgcgatttgcacggctggccagatggttccccctagaactagagca 517

                  
Query: 521 ggaatga 527
           |||||||
Sbjct: 516 ggaatga 510
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>gb|AY110530.1| Zea mays CL17960_1 mRNA sequence
          Length = 849

 Score =  119 bits (60), Expect = 1e-23
 Identities = 170/206 (82%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                       
Query: 322 cttctggtcttcaattttcttctggaacgatgggaaccattgcttccaagccgcatctcc 381
           |||||||||||| |||||||   ||||||| | ||||||  ||||||| |  || || ||
Sbjct: 209 cttctggtcttcgattttct---ggaacgaagtgaaccaccgcttccaggaggcgtcacc 265

                                                                       
Query: 382 ttgctgctcgatccaagacaagaaacaactgtctaacaggcagaacaagttcacgtaaag 441
            |||||||| ||||| |||| ||| || ||||| |  ||||||||||||||||| || ||
Sbjct: 266 ctgctgctcaatccacgacaggaagcagctgtccaggaggcagaacaagttcacatacag 325

                                                                       
Query: 442 cagttgatatcgcacgggaatgaagcggaagtttgcgatctgcacagccggccagatggc 501
            || || || |||||||||| |||||||||||| |||||||||||||| |||||||||| 
Sbjct: 326 gagctggtaccgcacgggaacgaagcggaagttcgcgatctgcacagcaggccagatggt 385

                                     
Query: 502 tccccctaaaactagagcaggaatga 527
           ||| ||||| || ||||| |||||||
Sbjct: 386 tccgcctaacaccagagccggaatga 411
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>ref|XM_420151.1| PREDICTED: Gallus gallus similar to Burkitt lymphoma receptor 1
            isoform 2; Burkitt lymphoma receptor 1, GTP-binding
            protein; C-X-C chemokine receptor type 5;
            monocyte-derived receptor 15 (LOC422150), mRNA
          Length = 1785

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 48   tgctctgcaggttaaacaaacagcat 73
            |||||||||||| |||||||||||||
Sbjct: 1013 tgctctgcaggtaaaacaaacagcat 1038
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>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence
          Length = 182051

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 321   tcttctggtcttcaattttctt 342
             ||||||||||||||||||||||
Sbjct: 59457 tcttctggtcttcaattttctt 59478
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>emb|CR387150.1| Gallus gallus finished cDNA, clone ChEST270p1
          Length = 1606

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 48  tgctctgcaggttaaacaaacagcat 73
           |||||||||||| |||||||||||||
Sbjct: 830 tgctctgcaggtaaaacaaacagcat 855
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>emb|CR352716.1| Gallus gallus finished cDNA, clone ChEST39n5
          Length = 1638

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 48  tgctctgcaggttaaacaaacagcat 73
           |||||||||||| |||||||||||||
Sbjct: 864 tgctctgcaggtaaaacaaacagcat 889
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>emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, complete sequence
          Length = 32589

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   tcttcaattttcttctggaac 349
             |||||||||||||||||||||
Sbjct: 13686 tcttcaattttcttctggaac 13666
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>gb|AC175311.1| Medicago truncatula clone mth2-45n8, complete sequence
          Length = 94425

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 394   ccaagacaagaaacaactgtctaacaggcagaacaagttcacgtaaagcagttgata 450
             |||||||||||| || || || |||| |||||| |||||||| ||||| || |||||
Sbjct: 43398 ccaagacaagaagcagctatccaacaagcagaagaagttcacataaaggagctgata 43342
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>ref|XM_691209.1| PREDICTED: Danio rerio similar to Mucin-2 precursor (Intestinal
           mucin 2) (LOC567901), partial mRNA
          Length = 3300

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 156 tccacatgacagtgatgccca 176
           |||||||||||||||||||||
Sbjct: 357 tccacatgacagtgatgccca 337
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>ref|NM_069384.2| Caenorhabditis elegans F25H8.6 (F25H8.6) mRNA, complete cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 329  tcttcaattttcttctggaac 349
            |||||||||||||||||||||
Sbjct: 1064 tcttcaattttcttctggaac 1044
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>emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in linkage group 1,
              complete sequence
          Length = 209486

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    agaactccacataaacagatg 212
              |||||||||||||||||||||
Sbjct: 128431 agaactccacataaacagatg 128451
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>ref|NM_125333.3| Arabidopsis thaliana oxysterol binding AT5G59420 mRNA, complete cds
          Length = 1726

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 tcaagcgtcttcttcaatca 300
           ||||||||||||||||||||
Sbjct: 71  tcaagcgtcttcttcaatca 52
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>gb|AC150416.2| Branchiostoma floridae clone CH302-63L21, complete sequence
          Length = 164084

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   atctccacatgacagtgatg 172
             ||||||||||||||||||||
Sbjct: 42678 atctccacatgacagtgatg 42659
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>gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-189E15, complete
              sequence
          Length = 208661

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 205    aacagatgatgcctgctggcagca 228
              ||||||||| ||||||||||||||
Sbjct: 143289 aacagatgaggcctgctggcagca 143266
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>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence
          Length = 217173

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gattacgaaacaaaaagtta 105
              ||||||||||||||||||||
Sbjct: 178092 gattacgaaacaaaaagtta 178073
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>emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in linkage group 6,
             complete sequence
          Length = 233655

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    aacaaaaagttaaacgagagcatt 117
             |||||||| |||||||||||||||
Sbjct: 49444 aacaaaaaattaaacgagagcatt 49421
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>gb|AC148398.10| Medicago truncatula clone mth2-24c23, complete sequence
          Length = 123656

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    tgctcttctggtcttcaattttct 341
              |||||||||||||||| |||||||
Sbjct: 111392 tgctcttctggtcttctattttct 111415



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 318   tgctcttctggtcttcaattttct 341
             |||||||||||||||| |||||||
Sbjct: 35730 tgctcttctggtcttctattttct 35753
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>gb|AC150203.13| Medicago truncatula clone mth2-65b23, complete sequence
          Length = 92476

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  tgctcttctggtcttcaattttct 341
            |||||||||||||||| |||||||
Sbjct: 3628 tgctcttctggtcttctattttct 3605
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>gb|BC103729.1| Rattus norvegicus cDNA clone IMAGE:7460363, **** WARNING: chimeric
           clone ****
          Length = 4397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctgatatacttcctggatat 249
           ||||||||||||||||||||
Sbjct: 408 ctgatatacttcctggatat 389
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>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 7/11
          Length = 349943

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ctgatatacttcctggatat 249
              ||||||||||||||||||||
Sbjct: 183427 ctgatatacttcctggatat 183408
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>emb|AL731634.4|OSJN00276 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05,
             complete sequence
          Length = 120635

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   aaaaagaatgatcatctcca 159
             ||||||||||||||||||||
Sbjct: 59163 aaaaagaatgatcatctcca 59182
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 48      tgctctgcaggttaaacaaa 67
               ||||||||||||||||||||
Sbjct: 2827418 tgctctgcaggttaaacaaa 2827399
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>gb|AC145796.2| Xenopus tropicalis clone CH216-19K4, complete sequence
          Length = 140406

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   gaaaaaagaatgatcatctc 157
             ||||||||||||||||||||
Sbjct: 53665 gaaaaaagaatgatcatctc 53646
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>gb|AY054473.1| Arabidopsis thaliana oxysterol-binding protein (At5g59350;
           F2O15.10) mRNA, complete cds
          Length = 1691

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 tcaagcgtcttcttcaatca 300
           ||||||||||||||||||||
Sbjct: 37  tcaagcgtcttcttcaatca 18
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      aaaaagaatgatcatctcca 159
                ||||||||||||||||||||
Sbjct: 15166268 aaaaagaatgatcatctcca 15166287



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 140      aaaaagaatgatcatctcca 159
                ||||||||||||||||||||
Sbjct: 14721673 aaaaagaatgatcatctcca 14721654
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>emb|BX830371.1|CNS0A03Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB76ZD07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1678

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 tcaagcgtcttcttcaatca 300
           ||||||||||||||||||||
Sbjct: 71  tcaagcgtcttcttcaatca 52
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>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 205    aacagatgatgcctgctggcagca 228
              ||||||||| ||||||||||||||
Sbjct: 195200 aacagatgaggcctgctggcagca 195223
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>ref|NM_212500.1| Rattus norvegicus guanine nucleotide binding protein-like 1 (Gnl1),
           mRNA
          Length = 2232

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctgatatacttcctggatat 249
           ||||||||||||||||||||
Sbjct: 636 ctgatatacttcctggatat 617
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>dbj|AB025604.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15
          Length = 75125

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   tcaagcgtcttcttcaatca 300
             ||||||||||||||||||||
Sbjct: 25119 tcaagcgtcttcttcaatca 25100
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>emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in linkage group 23,
             complete sequence
          Length = 268324

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaagttaaacgagagcattg 118
             ||||||||||||||||||||
Sbjct: 21298 aaagttaaacgagagcattg 21279
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>emb|BX294367.7| Mouse DNA sequence from clone RP23-472I18 on chromosome X, complete
             sequence
          Length = 47204

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ccaccagaactccacataaa 206
             ||||||||||||||||||||
Sbjct: 12689 ccaccagaactccacataaa 12670
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>emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chromosome 4, complete
              sequence
          Length = 237323

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    ctaacaggcagaacaagttc 433
              ||||||||||||||||||||
Sbjct: 147317 ctaacaggcagaacaagttc 147336
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>emb|AL606443.3|OSJN00008 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026L04,
             complete sequence
          Length = 129563

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   aaaaagaatgatcatctcca 159
             ||||||||||||||||||||
Sbjct: 61327 aaaaagaatgatcatctcca 61308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,201,538
Number of Sequences: 3902068
Number of extensions: 5201538
Number of successful extensions: 104383
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104242
Number of HSP's gapped (non-prelim): 138
length of query: 535
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 512
effective length of database: 17,143,297,704
effective search space: 8777368424448
effective search space used: 8777368424448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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