>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein|
           2) (AtFBL2) (COI-1) (AtCOI1)
          Length = 592

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = -3

Query: 477 MARPFWNIEFTP----PGTXSAGRLMEDGEPCVDRQAQVLAYYSLSGRRSDCPQSV 322
           MARP+WNIE  P    P     G + E   P     A +LAYYSL+G+R+DCP +V
Sbjct: 535 MARPYWNIELIPSRRVPEVNQQGEIREMEHP-----AHILAYYSLAGQRTDCPTTV 585

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 22/93 (23%), Positives = 38/93 (40%)
 Frame = +1

Query: 193  TSTRSIQYPHTNISLLPKKGPGATPSQTCASFVYVQSRRIQRNNRLRAVRPPPTKGVVCK 372
            T+  S++ P + + + P+  P  +  Q   +    Q  R ++N    +V+ P T      
Sbjct: 1398 TNMSSVKTPESTVPIAPELPPSTSTEQPVITEPTYQPTRGRKNRS--SVKTPETVVATAP 1455

Query: 373  YLSLPINTGLPIFHQPTRAXRAGRRKLNVPKGP 471
             L    +T  PI  +PT     GR   +  K P
Sbjct: 1456 KLQSSTSTDQPITPEPTSQATRGRTNRSSVKSP 1488

>POLS_MOUSE (Q6PB75) DNA polymerase sigma (EC 2.7.7.7)|
          Length = 542

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 205 SIQYPHTNISLLPKKGP-GATPSQTCASFVYVQSRRIQRNNRLRAVRPPPTKGVV---CK 372
           S+Q P T ++ LP   P  ++  Q  AS   + +     NN+ R   PPPT GV    C+
Sbjct: 386 SLQAPTTLMASLPTALPMPSSKPQPAASRTLIMTT----NNQTRVTIPPPTLGVAPVPCR 441

Query: 373 YLSLPINTGLPIFHQPT 423
              +   T L   H  T
Sbjct: 442 QAGVDGTTSLKAVHSVT 458

>ERI1_CAEEL (O44406) 3'-5' exonuclease eri-1 (EC 3.1.-.-) (Enhanced RNAi|
           protein)
          Length = 582

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 33  ENMLQKPGMLIPGSKHNSVTVAPTHCYFSIHLPRIR*EYQAKIACAYSSTQQ 188
           ENML++  +   G+KH+ +  A      +I + +++ E +    C+Y   Q+
Sbjct: 302 ENMLERLDLSFVGNKHSGLDDATNIAAIAIQMMKLKIELRINQKCSYKENQR 353

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 23/93 (24%), Positives = 38/93 (40%)
 Frame = +1

Query: 193  TSTRSIQYPHTNISLLPKKGPGATPSQTCASFVYVQSRRIQRNNRLRAVRPPPTKGVVCK 372
            T+  S++ P T +   P+  P  +  Q        Q+ R  R +R  +V+ P T      
Sbjct: 1437 TNRSSVKTPETVVPTAPELQPSTSTDQPVTPEPTSQATR-GRTDR-SSVKTPETVVPTAP 1494

Query: 373  YLSLPINTGLPIFHQPTRAXRAGRRKLNVPKGP 471
             L    +T  P+  +PT     GR+  +  K P
Sbjct: 1495 ELQASASTDQPVTSEPTSRTTRGRKNRSSVKTP 1527

>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)|
          Length = 3005

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 294 CTVTQDTEEQQTAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRXPC 437
           C   +  + QQ + SP+SSH   S  +P+L  Q +    P    R PC
Sbjct: 442 CKTCELLDIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPH---RSPC 486


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,581,097
Number of Sequences: 219361
Number of extensions: 1799893
Number of successful extensions: 3972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3968
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)