ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479398.1| Oryza sativa (japonica cultivar-group), mRNA 208 1e-50
2ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group... 208 1e-50
3dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
4dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
5dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
6dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds 208 1e-50
7dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 5e-50
8gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, comple... 167 5e-38
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
10dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
11gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, comp... 44 0.46
12dbj|AK133737.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 44 0.46
13dbj|AK163265.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 44 0.46
14dbj|AK158571.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 44 0.46
15dbj|AK029831.1| Mus musculus adult male testis cDNA, RIKEN full-... 44 0.46
16dbj|AK018351.1| Mus musculus 12 days embryo female ovary cDNA, R... 44 0.46
17gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complet... 44 0.46
18emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 42 1.8
19gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence 42 1.8
20gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence 42 1.8
21gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, com... 40 7.1
22ref|XM_609134.2| PREDICTED: Bos taurus similar to Inner nuclear ... 40 7.1
23ref|XM_721292.1| Plasmodium yoelii yoelii str. 17XNL mechanosens... 40 7.1
24ref|XM_739742.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.1
25emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 7.1
26emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in l... 40 7.1
27gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, co... 40 7.1
28emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in... 40 7.1
29gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, comp... 40 7.1
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
31gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 40 7.1
32gb|AE001439.1| Helicobacter pylori J99, complete genome 40 7.1
33emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, com... 40 7.1
34gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, com... 40 7.1
35emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16,... 40 7.1
36gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, comple... 40 7.1 
>ref|XM_479398.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3881

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3405 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3346

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3345 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3286

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3285 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3226

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 3225 gtttttta 3218



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047B07.120 mRNA
          Length = 3906

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3527 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3468

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3467 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3408

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3407 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3348

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3347 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3288

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 3287 gtttttta 3280



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 3562 gtgtatacagaactagctgc 3543
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>dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C10, full
            insert sequence
          Length = 2030

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1651 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1592

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 1591 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 1532

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 1531 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 1472

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 1471 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 1412

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 1411 gtttttta 1404



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 1686 gtgtatacagaactagctgc 1667
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>dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132O04, full
            insert sequence
          Length = 3881

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3405 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3346

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3345 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3286

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3285 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3226

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 3225 gtttttta 3218



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J03, full
            insert sequence
          Length = 2226

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1842 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1783

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 1782 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 1723

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 1722 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 1663

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 1662 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 1603

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 1602 gtttttta 1595



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 1877 gtgtatacagaactagctgc 1858
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>dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds
          Length = 3694

 Score =  208 bits (105), Expect = 1e-50
 Identities = 212/248 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3283 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3224

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3223 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3164

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3163 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3104

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3103 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3044

                    
Query: 511  gtttttta 518
            ||||||||
Sbjct: 3043 gtttttta 3036



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 3318 gtgtatacagaactagctgc 3299
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>dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H22, full
            insert sequence
          Length = 3905

 Score =  206 bits (104), Expect = 5e-50
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3526 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3467

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3466 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3407

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3406 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3347

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3346 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3287

                   
Query: 511  gtttttt 517
            |||||||
Sbjct: 3286 gtttttt 3280



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gtgtatacagaactagctgc 252
            ||||||||||||||||||||
Sbjct: 3561 gtgtatacagaactagctgc 3542
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>gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, complete sequence
          Length = 1853

 Score =  167 bits (84), Expect = 5e-38
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                        
Query: 271  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1392 tttacattctgaaattctgcctcgtcttgatcatccgcttcaatgccgcaagccagaagt 1333

                                                                        
Query: 331  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 390
            ||||||| ||||||||||| ||||| |  || | ||| || ||||| || ||||||||||
Sbjct: 1332 tgcactcatcccaatcacttgtcgttaagagtacctggaggtgcattgcagtggcaaaat 1273

                                                                        
Query: 391  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 450
            |||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 1272 cactagcatcaattgcactgcacaactgaatgagttttgatgaaacatttggagatatgt 1213

                                                                        
Query: 451  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 510
            | ||| | || ||||| | ||| || ||||| || ||| |||| ||||| ||||||||||
Sbjct: 1212 cgccactatttagttttgaaaacaatgcccctattttccttgaattgtcctcaatttcac 1153

                   
Query: 511  gtttttt 517
            | |||||
Sbjct: 1152 gcttttt 1146
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  155 bits (78), Expect = 2e-34
 Identities = 135/154 (87%)
 Strand = Plus / Minus

                                                                            
Query: 365      ctgaagttgcatcgcggtggcaaaatcactactatcaagtgcactgcacatctgaatgag 424
                |||||| |||||||| |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct: 27611305 ctgaaggtgcatcgcagtggcaaaatcaccgctatcaagtgcactgcaaagctgaatgag 27611246

                                                                            
Query: 425      ttttgatgaaacatttggagatatatctccagtgttgagtttcgcaaataacgccccaat 484
                |||||||||||| |||||||||||||| ||||  |||||||| |||||||  |  || ||
Sbjct: 27611245 ttttgatgaaacgtttggagatatatccccagaattgagttttgcaaatagtgttccgat 27611186

                                                  
Query: 485      cttctttgagttgtcttcaatttcacgtttttta 518
                |||  ||||||||||||| |||||||||||||||
Sbjct: 27611185 ctttcttgagttgtcttcgatttcacgtttttta 27611152



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                            
Query: 271      tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
                |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 27611878 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 27611819

                                               
Query: 331      tgcactcgtcccaatcactggtcgtcagaag 361
                ||||||||||||| || || || ||||||||
Sbjct: 27611818 tgcactcgtcccagtcgctcgttgtcagaag 27611788



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 233      gtgtatacagaactagctgc 252
                ||||||||||||||||||||
Sbjct: 27611913 gtgtatacagaactagctgc 27611894
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  155 bits (78), Expect = 2e-34
 Identities = 135/154 (87%)
 Strand = Plus / Minus

                                                                         
Query: 365   ctgaagttgcatcgcggtggcaaaatcactactatcaagtgcactgcacatctgaatgag 424
             |||||| |||||||| |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct: 68298 ctgaaggtgcatcgcagtggcaaaatcaccgctatcaagtgcactgcaaagctgaatgag 68239

                                                                         
Query: 425   ttttgatgaaacatttggagatatatctccagtgttgagtttcgcaaataacgccccaat 484
             |||||||||||| |||||||||||||| ||||  |||||||| |||||||  |  || ||
Sbjct: 68238 ttttgatgaaacgtttggagatatatccccagaattgagttttgcaaatagtgttccgat 68179

                                               
Query: 485   cttctttgagttgtcttcaatttcacgtttttta 518
             |||  ||||||||||||| |||||||||||||||
Sbjct: 68178 ctttcttgagttgtcttcgatttcacgtttttta 68145



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                         
Query: 271   tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgangagagccaaaagt 330
             |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 68871 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 68812

                                            
Query: 331   tgcactcgtcccaatcactggtcgtcagaag 361
             ||||||||||||| || || || ||||||||
Sbjct: 68811 tgcactcgtcccagtcgctcgttgtcagaag 68781



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gtgtatacagaactagctgc 252
             ||||||||||||||||||||
Sbjct: 68906 gtgtatacagaactagctgc 68887
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>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence
          Length = 215675

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 445   atatatctccagtgttgagttt 466
             ||||||||||||||||||||||
Sbjct: 30745 atatatctccagtgttgagttt 30766
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>dbj|AK133737.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730403H05 product:hypothetical
           protein, full insert sequence
          Length = 2860

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 445 atatatctccagtgttgagttt 466
           ||||||||||||||||||||||
Sbjct: 592 atatatctccagtgttgagttt 613
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>dbj|AK163265.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020007G14 product:unclassifiable, full insert
           sequence
          Length = 2268

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 445 atatatctccagtgttgagttt 466
           ||||||||||||||||||||||
Sbjct: 454 atatatctccagtgttgagttt 475
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>dbj|AK158571.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K230015A11 product:hypothetical
           Arginine-rich region profile containing protein, full
           insert sequence
          Length = 3053

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 445 atatatctccagtgttgagttt 466
           ||||||||||||||||||||||
Sbjct: 783 atatatctccagtgttgagttt 804
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>dbj|AK029831.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931406B08 product:unclassifiable, full
           insert sequence
          Length = 3128

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 445 atatatctccagtgttgagttt 466
           ||||||||||||||||||||||
Sbjct: 903 atatatctccagtgttgagttt 924
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>dbj|AK018351.1| Mus musculus 12 days embryo female ovary cDNA, RIKEN full-length
           enriched library, clone:6620401M08
           product:unclassifiable, full insert sequence
          Length = 2502

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 445 atatatctccagtgttgagttt 466
           ||||||||||||||||||||||
Sbjct: 614 atatatctccagtgttgagttt 635
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>gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complete sequence
          Length = 158807

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 445  atatatctccagtgttgagttt 466
            ||||||||||||||||||||||
Sbjct: 7407 atatatctccagtgttgagttt 7386
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>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    tttggagatatatctccagtg 458
              |||||||||||||||||||||
Sbjct: 868198 tttggagatatatctccagtg 868218
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>gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence
          Length = 93212

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    gcaaaggaacatggaaaaact 79
             |||||||||||||||||||||
Sbjct: 92089 gcaaaggaacatggaaaaact 92069
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>gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   gcaaaggaacatggaaaaact 79
            |||||||||||||||||||||
Sbjct: 3477 gcaaaggaacatggaaaaact 3457
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>gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, complete sequence
          Length = 37475

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   tttcagcaacaagaagctcc 142
             ||||||||||||||||||||
Sbjct: 32934 tttcagcaacaagaagctcc 32915
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>ref|XM_609134.2| PREDICTED: Bos taurus similar to Inner nuclear membrane protein Man1
            (LEM domain containing protein 3) (LOC530659), mRNA
          Length = 4809

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  tttgatgaaacatttggaga 445
            ||||||||||||||||||||
Sbjct: 1555 tttgatgaaacatttggaga 1574
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>ref|XM_721292.1| Plasmodium yoelii yoelii str. 17XNL mechanosensitive ion channel
           (PY05855) partial mRNA
          Length = 5148

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 tgaaacatttggagatatat 450
           ||||||||||||||||||||
Sbjct: 195 tgaaacatttggagatatat 214
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>ref|XM_739742.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000804.04.0)
           partial mRNA
          Length = 2394

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 tgaaacatttggagatatat 450
           ||||||||||||||||||||
Sbjct: 195 tgaaacatttggagatatat 214
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>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    tgagttttgatgaaacattt 440
              ||||||||||||||||||||
Sbjct: 103015 tgagttttgatgaaacattt 102996
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>emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in linkage group 9 Contains
             a gene for a novel protein similar to human FLJ20730
             protein,  a gene for a novel protein similar to rat
             steroid sensitive gene-1 protein (SSG-1), a gene for a
             novel protein similar to vertebrate coagulation factor V
             and VIII, a gene for a novel protein similar to human
             G-protein coupled receptor RE2, a gene for a novel
             transcript and a CpG island, complete sequence
          Length = 121086

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   actatcaagtgcactgcaca 414
             ||||||||||||||||||||
Sbjct: 54924 actatcaagtgcactgcaca 54943
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>gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, complete sequence
          Length = 211309

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   acaattttgacaatcagaaaaagg 233
             ||||||||||| ||||||||||||
Sbjct: 89220 acaattttgactatcagaaaaagg 89243
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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
             complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   agaaaaaggtgtatacagaa 244
             ||||||||||||||||||||
Sbjct: 93535 agaaaaaggtgtatacagaa 93554
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>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence
          Length = 127715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   aatgagttttgatgaaacat 438
             ||||||||||||||||||||
Sbjct: 53980 aatgagttttgatgaaacat 53999
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 421      tgagttttgatgaaacattt 440
                ||||||||||||||||||||
Sbjct: 34648894 tgagttttgatgaaacattt 34648875
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>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aggaacatggaaaaactatt 82
             ||||||||||||||||||||
Sbjct: 27432 aggaacatggaaaaactatt 27451
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     catggaaaaactattgagtc 87
              ||||||||||||||||||||
Sbjct: 685442 catggaaaaactattgagtc 685461
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>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence
          Length = 321304

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    taacaattttgacaatcaga 227
              ||||||||||||||||||||
Sbjct: 106710 taacaattttgacaatcaga 106691
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>gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tttcagcaacaagaagctcc 142
              ||||||||||||||||||||
Sbjct: 139473 tttcagcaacaagaagctcc 139492
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>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   agaaaaaggtgtatacagaa 244
             ||||||||||||||||||||
Sbjct: 75526 agaaaaaggtgtatacagaa 75545
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>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence
          Length = 161955

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   acaattttgacaatcagaaaaagg 233
             ||||||||||| ||||||||||||
Sbjct: 36475 acaattttgactatcagaaaaagg 36452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,075,884
Number of Sequences: 3902068
Number of extensions: 4075884
Number of successful extensions: 84317
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84175
Number of HSP's gapped (non-prelim): 132
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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