ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26m08 |
|---|---|
| Clone Library Name | barley_pub |
>PLDB_HAEIN (P44800) Probable lysophospholipase L2 (EC 3.1.1.5) (Lecithinase B)| Length = 313 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = -1 Query: 390 KNPKV----PRTRWVXMMKRTLRLLGAVVLKLQVPMISLQ*HEEEHCSVQNV 247 KNP + P RWV + ++ L V+ K+++P++ LQ +E+ +N+ Sbjct: 217 KNPAINLGGPTFRWVHLCLNAIKRLPKVIPKIEIPILILQAEKEKIVDNKNL 268
>FLIR_BUCAP (Q8KA35) Flagellar biosynthetic protein fliR| Length = 258 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -1 Query: 144 VHTTFASMWLN*MHLLIACGISMHLHLEFAVHDS 43 + T+ S WLN ++LL +++HL+L F + DS Sbjct: 120 IGTSLISRWLNILNLLFFLTLNVHLYLVFMLIDS 153
>VGLE_EHV1D (P24380) Glycoprotein E precursor| Length = 552 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 136 NIRKHVVELNASSDCMWYLNASSPGICSS*FRFFWVCM 23 N+ H+VE + S++ WY +S C FR F C+ Sbjct: 223 NLESHIVEPSFSAEIQWYYMNTSSSSCDL-FRVFETCI 259
>VGLE_EHV1B (Q6S6V7) Glycoprotein E precursor| Length = 550 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 136 NIRKHVVELNASSDCMWYLNASSPGICSS*FRFFWVCM 23 N+ H+VE + S++ WY +S C FR F C+ Sbjct: 221 NLESHIVEPSFSAEIQWYYMNTSSSSCDL-FRVFETCI 257
>VGLE_EHV1A (P68328) Glycoprotein E precursor| Length = 550 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 136 NIRKHVVELNASSDCMWYLNASSPGICSS*FRFFWVCM 23 N+ H+VE + S++ WY +S C FR F C+ Sbjct: 221 NLESHIVEPSFSAEIQWYYMNTSSSSCDL-FRVFETCI 257
>BACB_BACLI (O68007) Bacitracin synthetase 2 (BA2) [Includes: ATP-dependent| lysine adenylase (LysA) (Lysine activase); ATP-dependent D-ornithine adenylase (D-OrnA) (D-ornithine activase); Ornithine racemase (EC 5.1.1.12)] Length = 2607 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = -3 Query: 232 FQERIPLAE----LLVVGTVF--FSPRIMRIIGCAGTYNIRKHVVELN 107 F +RIPL+E L VV F FS + I+ C+G I + V +LN Sbjct: 689 FTKRIPLSEHDTVLQVVSFSFDAFSEEVYPILACSGRLVISRKVSDLN 736
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 229 ETLCXTNILDRTVFLLVSLQAYHWHLKLK---HHSTKQP 336 E++C ILD VFLL + H LK K HHS+ QP Sbjct: 469 ESIC---ILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQP 504
>DPOL_ADEB2 (O72539) DNA polymerase (EC 2.7.7.7)| Length = 1017 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 15/68 (22%) Frame = +2 Query: 119 HMLANVVCT---------------GTTDDSHNSWGKKHSSNHQKLSQRYSFLKLSVPRTF 253 + L N VCT TT+ +++ K + S+ Q+ SQR+ +LS+ RT Sbjct: 897 YALKNTVCTCCGHVGKGKLRAKGHATTELCYDTLAKCYLSDAQQGSQRFHTSRLSLKRTL 956 Query: 254 WTEQCSSS 277 T Q +++ Sbjct: 957 ATNQSNAA 964
>NINF_BPP22 (Q38666) Protein ninF| Length = 58 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +1 Query: 91 CNQKMHSVQPHACECC 138 C QK+H ++ H CE C Sbjct: 24 CGQKLHVLEVHVCEAC 39
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex| protein Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 229 ETLCXTNILDRTVFLLVSLQAYHWHLKLK---HHSTKQP 336 E++C ILD VFLL + H LK K HHS+ QP Sbjct: 477 ESIC---ILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQP 512
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 229 ETLCXTNILDRTVFLLVSLQAYHWHLKLK---HHSTKQP 336 E++C ILD VFLL + H LK K HHS+ QP Sbjct: 478 ESIC---ILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQP 513
>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)| Length = 1765 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 229 ETLCXTNILDRTVFLLVSLQAYHWHLKLK---HHSTKQP 336 E++C ILD VFLL + H LK K HHS+ QP Sbjct: 478 ESIC---ILDLEVFLLGVVYTSHLQLKEKCNSHHSSYQP 513
>ECM29_DROME (Q9V677) Proteasome-associated protein ECM29 homolog| Length = 1890 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +3 Query: 117 TTCLRMLYVPAQPMILIILGEKNTV 191 T+C Y PA+ ++L+I GE+N++ Sbjct: 488 TSCYPEYYAPARYLLLLIAGERNSL 512
>IR02_HCMVA (P16802) Hypothetical protein IRL2 (TRL2)| Length = 115 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Frame = +2 Query: 86 PHAIR-----RCIQFNHMLANVVCTGTTDDSHNSWGKKHSSNHQ 202 PHAI +C+Q +H+L ++C T + KK N++ Sbjct: 56 PHAITNHGHDKCMQTSHLLCLLLCVATGSEEGEGKEKKKEQNNR 99
>TRPF_HANAN (Q875I3) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)| (PRAI) Length = 232 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +3 Query: 111 SSTTCLRMLYVPAQPMILIILGEKNTVPTTKSSAKGIRS*NSLXHEHSGQNSV 269 S + M++VP +P + + K V +S KG+ S GQ+S+ Sbjct: 20 SGADMIGMIFVPGKPRTIQVSNAKEVVSLVESKRKGLNSNELYDSLKPGQDSL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,765,075 Number of Sequences: 219361 Number of extensions: 1050205 Number of successful extensions: 2720 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2720 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
