ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ... 46 0.085
2emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B... 46 0.085
3emb|AL732547.8| Mouse DNA sequence from clone RP23-24E11 on chro... 44 0.34
4emb|AL591044.11| Human DNA sequence from clone RP11-396L22 on ch... 42 1.3
5ref|NM_202005.1| Arabidopsis thaliana unknown protein AT1G01070 ... 40 5.3
6ref|NM_099989.1| Arabidopsis thaliana unknown protein AT1G01070 ... 40 5.3
7gb|BT020209.1| Arabidopsis thaliana At1g01070 mRNA, complete cds 40 5.3
8gb|BT015826.1| Arabidopsis thaliana At1g01070 gene, complete cds 40 5.3
9gb|AC160961.3| Mus musculus BAC clone RP24-288N19 from chromosom... 40 5.3
10gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome... 40 5.3
11emb|CR855335.5| Zebrafish DNA sequence from clone CH211-171A1 in... 40 5.3
12gb|AC104691.2| Homo sapiens BAC clone RP11-186E11 from 4, comple... 40 5.3
13emb|BX816126.1|CNS0ADVM Arabidopsis thaliana Full-length cDNA Co... 40 5.3
14gb|AY089039.1| Arabidopsis thaliana clone 20749 mRNA, complete s... 40 5.3
15dbj|AB016883.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.3
16gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana... 40 5.3
17emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 i... 40 5.3
18gb|AC087309.10| Homo sapiens 12 BAC RP11-545J16 (Roswell Park Ca... 40 5.3 
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
          Length = 198493

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 193    caaccaccaaaagctcagccaaa 215
              |||||||||||||||||||||||
Sbjct: 137330 caaccaccaaaagctcagccaaa 137308
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>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20D10 (ESSA project)
          Length = 147215

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 193   caaccaccaaaagctcagccaaa 215
             |||||||||||||||||||||||
Sbjct: 22915 caaccaccaaaagctcagccaaa 22893
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>emb|AL732547.8| Mouse DNA sequence from clone RP23-24E11 on chromosome 4, complete
              sequence
          Length = 206741

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 243    cacgaacattctggacagaaca 264
              ||||||||||||||||||||||
Sbjct: 158812 cacgaacattctggacagaaca 158833
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>emb|AL591044.11| Human DNA sequence from clone RP11-396L22 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 133561

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 234   tctctgtnccacgaacattctggacaga 261
             ||||||| ||||||||||||||| ||||
Sbjct: 48930 tctctgtaccacgaacattctggtcaga 48903



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 234   tctctgtnccacgaacattctgg 256
             ||||||| |||||||||||||||
Sbjct: 89567 tctctgtaccacgaacattctgg 89589



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 234   tctctgtnccacgaacattctgg 256
             ||||||| |||||||||||||||
Sbjct: 26123 tctctgtaccacgaacattctgg 26101
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>ref|NM_202005.1| Arabidopsis thaliana unknown protein AT1G01070 transcript variant
            AT1G01070.2 mRNA, complete cds
          Length = 1432

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1189 aaagaaacggaatcatcaactgca 1212
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>ref|NM_099989.1| Arabidopsis thaliana unknown protein AT1G01070 transcript variant
            AT1G01070.1 mRNA, complete cds
          Length = 1310

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1067 aaagaaacggaatcatcaactgca 1090
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>gb|BT020209.1| Arabidopsis thaliana At1g01070 mRNA, complete cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1000 aaagaaacggaatcatcaactgca 1023
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>gb|BT015826.1| Arabidopsis thaliana At1g01070 gene, complete cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1035 aaagaaacggaatcatcaactgca 1058
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>gb|AC160961.3| Mus musculus BAC clone RP24-288N19 from chromosome 16, complete
             sequence
          Length = 157144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   cagttccaaccaccaaaagc 206
             ||||||||||||||||||||
Sbjct: 77181 cagttccaaccaccaaaagc 77162
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>gb|AC130205.3| Mus musculus BAC clone RP24-430C1 from chromosome 1, complete sequence
          Length = 165927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tggcacctgaagcttaagca 317
             ||||||||||||||||||||
Sbjct: 51822 tggcacctgaagcttaagca 51841
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>emb|CR855335.5| Zebrafish DNA sequence from clone CH211-171A1 in linkage group 18,
            complete sequence
          Length = 51125

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   catacaaacccaaaagaaac 42
            ||||||||||||||||||||
Sbjct: 8156 catacaaacccaaaagaaac 8137
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>gb|AC104691.2| Homo sapiens BAC clone RP11-186E11 from 4, complete sequence
          Length = 118631

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tgcattcagttcaaccacat 123
             ||||||||||||||||||||
Sbjct: 31297 tgcattcagttcaaccacat 31316
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>emb|BX816126.1|CNS0ADVM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH2ZA01 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1433

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1189 aaagaaacggaatcatcaactgca 1212
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>gb|AY089039.1| Arabidopsis thaliana clone 20749 mRNA, complete sequence
          Length = 1309

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   aaagaaacggaatcatgaactgca 58
            |||||||||||||||| |||||||
Sbjct: 1066 aaagaaacggaatcatcaactgca 1089
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>dbj|AB016883.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K12G2
          Length = 45878

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    catacaaacccaaaagaaac 42
             ||||||||||||||||||||
Sbjct: 15747 catacaaacccaaaagaaac 15728
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>gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I,
             complete sequence
          Length = 86436

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    aaagaaacggaatcatgaactgca 58
             |||||||||||||||| |||||||
Sbjct: 38698 aaagaaacggaatcatcaactgca 38675
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>emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 in linkage group 18,
            complete sequence
          Length = 186826

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   catacaaacccaaaagaaac 42
            ||||||||||||||||||||
Sbjct: 8257 catacaaacccaaaagaaac 8238
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>gb|AC087309.10| Homo sapiens 12 BAC RP11-545J16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    acccaaaagaaacggaatca 49
             ||||||||||||||||||||
Sbjct: 77393 acccaaaagaaacggaatca 77374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,932,820
Number of Sequences: 3902068
Number of extensions: 2932820
Number of successful extensions: 49082
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49054
Number of HSP's gapped (non-prelim): 28
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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