ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186390.2| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
2dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
3gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence 86 1e-13
4dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
5gb|AY108527.1| Zea mays PCO089202 mRNA sequence 86 1e-13
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
7dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
8dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
9gb|AY109152.1| Zea mays PCO089203 mRNA sequence 70 7e-09
10dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
11gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 44 0.41
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.41
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
14gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRN... 40 6.5
15ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranylt... 40 6.5
16gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, comple... 40 6.5
17gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, comple... 40 6.5
18gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complet... 40 6.5
19ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195),... 40 6.5
20gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase... 40 6.5
21gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase... 40 6.5
22gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydro... 40 6.5
23gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.5 
>ref|NM_186390.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 667

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 371 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 430
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                                                            
Query: 431 ttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatctcca 479
           |||||||| || ||| |||||||  |||||||||| |||||||||||||
Sbjct: 206 ttgaaggttgcgggctcgccgcgggcgaccggatcgggcacgatctcca 158



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 179 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 238
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 239 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 283
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
to top
>dbj|AK060475.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F03, full
           insert sequence
          Length = 678

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 371 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 430
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 266 tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 207

                                                            
Query: 431 ttgaaggtggctggcacgccgcgctcgaccggatcaggcacgatctcca 479
           |||||||| || ||| |||||||  |||||||||| |||||||||||||
Sbjct: 206 ttgaaggttgcgggctcgccgcgggcgaccggatcgggcacgatctcca 158



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 179 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 238
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 458 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 399

                                                        
Query: 239 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 283
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 398 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 354
to top
>gb|BT018231.1| Zea mays clone EL01N0562D11.c mRNA sequence
          Length = 606

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 386 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 445
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 183 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 124

                                          
Query: 446 acgccgcgctcgaccggatcaggcacgatct 476
             |||| ||||||||||||| ||||||||||
Sbjct: 123 ttgccgggctcgaccggatcgggcacgatct 93



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 176 ccaatgctgaacccgaaggagatgcagct 204
           ||||||||||| ||||| |||||||||||
Sbjct: 393 ccaatgctgaagccgaacgagatgcagct 365
to top
>dbj|AK059284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D07, full
           insert sequence
          Length = 566

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 371 tatttaacatcaataaccagcttcccctctgtgatgtttttatcagtggaagcggagatc 430
           ||||| |||||||||||||||||||| |    |||  |||||||||||||||||||||||
Sbjct: 97  tatttcacatcaataaccagcttccctttaccgatagttttatcagtggaagcggagatc 38

                                              
Query: 431 ttgaaggtggctggcacgccgcgctcgaccggatc 465
           |||||||| || ||| |||||||  ||||||||||
Sbjct: 37  ttgaaggttgcgggctcgccgcgggcgaccggatc 3



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 179 atgctgaacccgaaggagatgcagctcaattcctcatcatgctttccgagcatcttcatc 238
           |||||||||||||| |||||||||||||  |||||||| |  |  || ||||||||||| 
Sbjct: 289 atgctgaacccgaacgagatgcagctcagctcctcatcgttatcacccagcatcttcatg 230

                                                        
Query: 239 tgaatggtgtaagaacctggtggagtgattgatggtaaggtttgc 283
              ||||||||||| ||||||||||||  |||||| | |||||||
Sbjct: 229 gtgatggtgtaagagcctggtggagtgtatgatggcagggtttgc 185
to top
>gb|AY108527.1| Zea mays PCO089202 mRNA sequence
          Length = 666

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 386 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 445
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 262 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 203

                                          
Query: 446 acgccgcgctcgaccggatcaggcacgatct 476
             |||| ||||||||||||| ||||||||||
Sbjct: 202 ttgccgggctcgaccggatcgggcacgatct 172



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 176 ccaatgctgaacccgaaggagatgcagct 204
           ||||||||||| ||||| |||||||||||
Sbjct: 472 ccaatgctgaagccgaacgagatgcagct 444
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                           
Query: 414     cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 473
               ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 3231342 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 3231283

                     
Query: 474     tctcca 479
               ||||||
Sbjct: 3231282 tctcca 3231277



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 179     atgctgaacccgaaggagatgcagctcaattcctcatc 216
               |||||||||||||| |||||||||||||  ||||||||
Sbjct: 3233684 atgctgaacccgaacgagatgcagctcagctcctcatc 3233647



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 371     tatttaacatcaataaccagcttccc 396
               ||||| ||||||||||||||||||||
Sbjct: 3233350 tatttcacatcaataaccagcttccc 3233325
to top
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                          
Query: 414    cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 473
              ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 146332 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 146273

                    
Query: 474    tctcca 479
              ||||||
Sbjct: 146272 tctcca 146267



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 179    atgctgaacccgaaggagatgcagctcaattcctcatc 216
              |||||||||||||| |||||||||||||  ||||||||
Sbjct: 148674 atgctgaacccgaacgagatgcagctcagctcctcatc 148637



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 371    tatttaacatcaataaccagcttccc 396
              ||||| ||||||||||||||||||||
Sbjct: 148340 tatttcacatcaataaccagcttccc 148315
to top
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                         
Query: 414   cagtggaagcggagatcttgaaggtggctggcacgccgcgctcgaccggatcaggcacga 473
             ||||||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||
Sbjct: 41035 cagtggaagcggagatcttgaaggttgcgggctcgccgcgggcgaccggatcgggcacga 40976

                   
Query: 474   tctcca 479
             ||||||
Sbjct: 40975 tctcca 40970



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 179   atgctgaacccgaaggagatgcagctcaattcctcatc 216
             |||||||||||||| |||||||||||||  ||||||||
Sbjct: 43377 atgctgaacccgaacgagatgcagctcagctcctcatc 43340



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 371   tatttaacatcaataaccagcttccc 396
             ||||| ||||||||||||||||||||
Sbjct: 43043 tatttcacatcaataaccagcttccc 43018
to top
>gb|AY109152.1| Zea mays PCO089203 mRNA sequence
          Length = 811

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                       
Query: 386 accagcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggctggc 445
           |||||||||||||    |||| |||||||||| ||||||||||||||||| ||||| |||
Sbjct: 273 accagcttccccttctcgatggttttatcagtagaagcggagatcttgaaagtggcgggc 214

                                          
Query: 446 acgccgcgctcgaccggatcaggcacgatct 476
             |||| | ||||||||||| |||| |||||
Sbjct: 213 ttgccgggttcgaccggatcgggcaggatct 183



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 172 gaagccaatgctgaacccgaaggagatgcagctca 206
           |||||| |||||||||||||| |||||||||||||
Sbjct: 487 gaagccgatgctgaacccgaacgagatgcagctca 453
to top
>dbj|AK106623.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B04, full
           insert sequence
          Length = 678

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 389 agcttcccctctgtgatgtttttatcagtggaagcggagatcttgaaggtggc 441
           ||||||||||  |||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 289 agcttccccttagtgatgcttttatccgtggatgcggagatcttgaaggtggc 237



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 245 gtgtaagaacctggtggagtgattgatggtaa 276
           ||||||||||||||||| ||||||||||||||
Sbjct: 433 gtgtaagaacctggtggggtgattgatggtaa 402
to top
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 416   gtggaagcggagatcttgaaggtggc 441
             ||||| ||||||||||||||||||||
Sbjct: 88332 gtggatgcggagatcttgaaggtggc 88307
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 416      gtggaagcggagatcttgaaggtggc 441
                ||||| ||||||||||||||||||||
Sbjct: 32436204 gtggatgcggagatcttgaaggtggc 32436179
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 416      gtggaagcggagatcttgaaggtggc 441
                ||||| ||||||||||||||||||||
Sbjct: 32526714 gtggatgcggagatcttgaaggtggc 32526689
to top
>gb|AY029303.1| Strongylocentrotus purpuratus ADAM precursor, mRNA, complete cds
          Length = 3072

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   acccacgagtgttacacaga 69
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
to top
>ref|XM_743971.1| Aspergillus fumigatus Af293 Rab geranylgeranyltransferase, subunit
           beta (Afu7g04460) partial mRNA
          Length = 915

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 gagcatcttcatctgaatggtgta 249
           |||||||||| |||||||||||||
Sbjct: 40  gagcatcttcgtctgaatggtgta 63
to top
>gb|AC011341.3| Homo sapiens chromosome 5 clone CTC-269F1, complete sequence
          Length = 51684

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gggcaaggaagccaatgctg 184
             ||||||||||||||||||||
Sbjct: 30310 gggcaaggaagccaatgctg 30291
to top
>gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, complete sequence
          Length = 184589

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  gggcaaggaagccaatgctg 184
            ||||||||||||||||||||
Sbjct: 7207 gggcaaggaagccaatgctg 7226
to top
>gb|AC067947.6| Homo sapiens BAC clone RP11-492I5 from 2, complete sequence
          Length = 137457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    gagcatcttcatctgaatgg 245
              ||||||||||||||||||||
Sbjct: 118102 gagcatcttcatctgaatgg 118121
to top
>ref|NM_214470.1| Strongylocentrotus purpuratus ADAM (LOC373195), mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   acccacgagtgttacacaga 69
            ||||||||||||||||||||
Sbjct: 2068 acccacgagtgttacacaga 2049
to top
>gb|AY487776.1| Natrix tessellata isolate T299 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 atatttaacatcaataacca 389
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
to top
>gb|AY487773.1| Natrix tessellata isolate T157 NADH dehydrogenase subunit 2 (ND2)
           gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 atatttaacatcaataacca 389
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
to top
>gb|AY870641.1| Natrix tessellata voucher CAS 182901 NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 atatttaacatcaataacca 389
           ||||||||||||||||||||
Sbjct: 888 atatttaacatcaataacca 907
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 450     cgcgctcgaccggatcaggc 469
               ||||||||||||||||||||
Sbjct: 2234998 cgcgctcgaccggatcaggc 2235017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,656,969
Number of Sequences: 3902068
Number of extensions: 3656969
Number of successful extensions: 71991
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71842
Number of HSP's gapped (non-prelim): 146
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top