ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome... 44 0.28
2gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome... 42 1.1
3gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosom... 42 1.1
4gb|CP000121.1| Anabaena variabilis ATCC 29413 plasmid C, complet... 40 4.3
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
6dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
7dbj|AK070704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
8dbj|AP001876.5| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 4.3

>gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome 13, complete sequence
          Length = 190792

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 241   tattagcaatggtcccaagctg 262
             ||||||||||||||||||||||
Sbjct: 94049 tattagcaatggtcccaagctg 94028



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>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence
          Length = 207840

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   cagcagtacaagagcagcaca 151
             |||||||||||||||||||||
Sbjct: 13963 cagcagtacaagagcagcaca 13983



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>gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosome 12, complete sequence
          Length = 210571

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 131    cagcagtacaagagcagcaca 151
              |||||||||||||||||||||
Sbjct: 171047 cagcagtacaagagcagcaca 171067



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>gb|CP000121.1| Anabaena variabilis ATCC 29413 plasmid C, complete sequence
          Length = 300758

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    gttcttcatccaagctacaa 121
              ||||||||||||||||||||
Sbjct: 177512 gttcttcatccaagctacaa 177531



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 134     cagtacaagagcagcacatgccatcagc 161
               ||||||| ||||||||||||||| ||||
Sbjct: 2167254 cagtacatgagcagcacatgccaccagc 2167281



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>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 134   cagtacaagagcagcacatgccatcagc 161
             ||||||| ||||||||||||||| ||||
Sbjct: 45516 cagtacatgagcagcacatgccaccagc 45543



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>dbj|AK070704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056N10, full
            insert sequence
          Length = 2476

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 134  cagtacaagagcagcacatgccatcagc 161
            ||||||| ||||||||||||||| ||||
Sbjct: 2430 cagtacatgagcagcacatgccaccagc 2403



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>dbj|AP001876.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2544I7, complete
             sequence
          Length = 197086

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   caagacattattagcaatgg 252
             ||||||||||||||||||||
Sbjct: 16332 caagacattattagcaatgg 16313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,223,581
Number of Sequences: 3902068
Number of extensions: 2223581
Number of successful extensions: 39101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39066
Number of HSP's gapped (non-prelim): 35
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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