>dbj|AB055152.1| Triticum aestivum mrpl11 mRNA for mitochondrial ribosomal protein
           L11, complete cds
          Length = 956

 Score =  214 bits (108), Expect = 2e-52
 Identities = 130/138 (94%)
 Strand = Plus / Minus

                                                                       
Query: 235 ccggtcagagatccttcacgatttcaatgcccatggacttggccgtgccgatgatggact 294
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 617 ccggtcagagatccttgacgatttcgatgcccatggacttggccgtgccgatgatggact 558

                                                                       
Query: 295 tgcacagggcctcnagggacatgtgcttgcagaacgggtcggactgcttcagctttgcga 354
           ||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 557 tgcacagggcctcgagcgacatgtgcttgcagaacgggtctgactgcttcagcttcgcga 498

                             
Query: 355 tctcatanacatggcgga 372
           |||| || ||||||||||
Sbjct: 497 tctcgtagacatggcgga 480

>ref|NM_196922.1| Oryza sativa (japonica cultivar-group) putative ribosomal protein
           L11 (OSJNBa0006L06.28), mRNA
          Length = 468

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 258 tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcnagggacatg 317
           |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 449 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 390

                                                                
Query: 318 tgcttgcagaacgggtcggactgcttcagctttgcgatctcatanacatggcg 370
           ||||||||| | || || || |||||||  || |||||||| || ||||||||
Sbjct: 389 tgcttgcagtagggatcagattgcttcaatttcgcgatctcgtagacatggcg 337

>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                         
Query: 258   tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcnagggacatg 317
             |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 31366 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 31425

                                                                  
Query: 318   tgcttgcagaacgggtcggactgcttcagctttgcgatctcatanacatggcg 370
             ||||||||| | || || || |||||||  || |||||||| || ||||||||
Sbjct: 31426 tgcttgcagtagggatcagattgcttcaatttcgcgatctcgtagacatggcg 31478

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcnagggacatg 317
                |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 16686849 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 16686908

                                                                     
Query: 318      tgcttgcagaacgggtcggactgcttcagctttgcgatctcatanacatggcg 370
                ||||||||| | || || || |||||||  || |||||||| || ||||||||
Sbjct: 16686909 tgcttgcagtagggatcagattgcttcaatttcgcgatctcgtagacatggcg 16686961

>dbj|AK063749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G08, full
           insert sequence
          Length = 849

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 258 tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcnagggacatg 317
           |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 553 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 494

                                                                
Query: 318 tgcttgcagaacgggtcggactgcttcagctttgcgatctcatanacatggcg 370
           ||||||||| | || || || |||||||  || |||||||| || ||||||||
Sbjct: 493 tgcttgcagtagggatcagattgcttcaatttcgcgatctcgtagacatggcg 441

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      tcaatgcccatggacttggccgtgccgatgatggacttgcacagggcctcnagggacatg 317
                |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 16695889 tcaatgcccatggagttggctgtgccaatgattgacttgcacagcgcctcgagtgacatg 16695948

                                                                     
Query: 318      tgcttgcagaacgggtcggactgcttcagctttgcgatctcatanacatggcg 370
                ||||||||| | || || || |||||||  || |||||||| || ||||||||
Sbjct: 16695949 tgcttgcagtagggatcagattgcttcaatttcgcgatctcgtagacatggcg 16696001

>gb|BT017431.1| Zea mays clone EL01N0403D07.c mRNA sequence
          Length = 1181

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 3   tattttggaacagggggagtagta 26
           ||||||||||||||||||||||||
Sbjct: 757 tattttggaacagggggagtagta 780

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 3        tattttggaacagggggagtag 24
                ||||||||||||||||||||||
Sbjct: 22773657 tattttggaacagggggagtag 22773678

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 3        tattttggaacagggggagtagtaga 28
                |||||||||||||||||| |||||||
Sbjct: 28535175 tattttggaacagggggaatagtaga 28535150



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 3       tattttggaacagggggagtagta 26
               ||||||||||||| ||||||||||
Sbjct: 1722940 tattttggaacagagggagtagta 1722963

>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034C09
          Length = 170226

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 3     tattttggaacagggggagtagtaga 28
             |||||||||||||||||| |||||||
Sbjct: 61614 tattttggaacagggggaatagtaga 61589

>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 3     tattttggaacagggggagtag 24
             ||||||||||||||||||||||
Sbjct: 60608 tattttggaacagggggagtag 60629

>dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full
            insert sequence
          Length = 1640

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 3    tattttggaacagggggagtagtaga 28
            |||||||||||||||||| |||||||
Sbjct: 1280 tattttggaacagggggaatagtaga 1305

>dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M21, full
            insert sequence
          Length = 1559

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 3    tattttggaacagggggagtagtaga 28
            |||||||||||||||||| |||||||
Sbjct: 1201 tattttggaacagggggaatagtaga 1226

>emb|AL929178.7| Mouse DNA sequence from clone RP23-77M17 on chromosome 2, complete
             sequence
          Length = 100057

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    gaagaaaactgtcacatgatacaaa 98
             ||||||||| |||||||||||||||
Sbjct: 65529 gaagaaaacagtcacatgatacaaa 65505

>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
             sequence
          Length = 252420

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aagaaaactgtcacatgata 94
             ||||||||||||||||||||
Sbjct: 22832 aagaaaactgtcacatgata 22813

>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08,
             complete sequence
          Length = 143955

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     tttattttggaacagggggagtag 24
             ||||||||||||||| ||||||||
Sbjct: 31887 tttattttggaacagagggagtag 31864

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     agataaatcccatccctacc 152
               ||||||||||||||||||||
Sbjct: 4019134 agataaatcccatccctacc 4019153

>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 107650

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     tactacccgaccaccaccaa 62
              ||||||||||||||||||||
Sbjct: 102391 tactacccgaccaccaccaa 102372

>gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161517

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    gctagtccagccagaccggt 239
              ||||||||||||||||||||
Sbjct: 109937 gctagtccagccagaccggt 109918

>gb|AC074331.2|AC074331 Homo sapiens chromosome 19, BAC CTC-204F22 (BC228680), complete
            sequence
          Length = 156321

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tccctacctttctttcaaat 164
            ||||||||||||||||||||
Sbjct: 6968 tccctacctttctttcaaat 6987

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 3        tattttggaacagggggagtagta 26
                ||||||||||||| ||||||||||
Sbjct: 16248922 tattttggaacagagggagtagta 16248945

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 1       tttattttggaacagggggagtag 24
               ||||||||||||||| ||||||||
Sbjct: 8310843 tttattttggaacagagggagtag 8310820

>gb|AC138470.1| Homo sapiens chromosome 19 clone CTC-204F22, complete sequence
          Length = 156312

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    tccctacctttctttcaaat 164
              ||||||||||||||||||||
Sbjct: 149345 tccctacctttctttcaaat 149326

>gb|AY156910.1| Trichoderma sp. SY xylanase mRNA, complete cds
          Length = 841

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tggccgtgccgatgatggac 293
           ||||||||||||||||||||
Sbjct: 546 tggccgtgccgatgatggac 527

>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     tattttggaacagggggagtagta 26
             ||||||||||||| ||||||||||
Sbjct: 65283 tattttggaacagagggagtagta 65306

>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1344_B01
          Length = 170912

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     tattttggaacagggggagtagta 26
             ||||||||||||| ||||||||||
Sbjct: 65438 tattttggaacagagggagtagta 65461

>gb|AC021092.1|AC021092 Homo sapiens chromosome 19, cosmid R29827, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tccctacctttctttcaaat 164
             ||||||||||||||||||||
Sbjct: 30293 tccctacctttctttcaaat 30312

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     cttggccgtgccgatgatgg 291
               ||||||||||||||||||||
Sbjct: 1830222 cttggccgtgccgatgatgg 1830203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,663,077
Number of Sequences: 3902068
Number of extensions: 2663077
Number of successful extensions: 45673
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45493
Number of HSP's gapped (non-prelim): 180
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)