ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27a23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112206.1| Zea mays CL9766_1 mRNA sequence 105 8e-20
2ref|XM_450515.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-18
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
4dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
5dbj|AK071737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
6gb|BT023985.1| Zea mays clone EL01N0413G11 mRNA sequence 56 7e-05
7emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in ... 46 0.065
8gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome... 42 1.0
9emb|AL139247.12| Human DNA sequence from clone RP1-52J10 on chro... 42 1.0
10emb|AJ508355.1|BMA508355 Brugia malayi ORF1, ORF2, ORF3 and ORF4... 42 1.0
11gb|AC125618.1| Homo sapiens 3 BAC RP11-510K16 (Roswell Park Canc... 42 1.0
12gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, comp... 42 1.0
13gb|AC024996.6| Homo sapiens chromosome 8, clone RP11-697C18, com... 42 1.0
14gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, com... 42 1.0
15gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Can... 42 1.0
16gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, com... 42 1.0
17emb|AL713968.9| Mouse DNA sequence from clone RP23-387L21 on chr... 42 1.0
18ref|NM_100320.2| Arabidopsis thaliana CRY2 (CRYPTOCHROME 2) AT1G... 40 4.0
19gb|AY486843.1| Hevea brasiliensis clone gHbCIRA2740 microsatelli... 40 4.0
20gb|AY576271.1| Arabidopsis thaliana strain CS6669 cryptochrome 2... 40 4.0
21gb|AY576270.1| Arabidopsis thaliana strain CS6042 cryptochrome 2... 40 4.0
22gb|AY576269.1| Arabidopsis thaliana strain CS6180 cryptochrome 2... 40 4.0
23gb|AY576268.1| Arabidopsis thaliana strain CS6175 cryptochrome 2... 40 4.0
24gb|AY576267.1| Arabidopsis thaliana strain CS1074 cryptochrome 2... 40 4.0
25gb|AY576266.1| Arabidopsis thaliana strain CS902 cryptochrome 2 ... 40 4.0
26gb|AY576265.1| Arabidopsis thaliana strain CS6694 cryptochrome 2... 40 4.0
27gb|AY576264.1| Arabidopsis thaliana strain CS6739 cryptochrome 2... 40 4.0
28gb|AY576263.1| Arabidopsis thaliana strain CS6788 cryptochrome 2... 40 4.0
29gb|AY576262.1| Arabidopsis thaliana strain CS6622 cryptochrome 2... 40 4.0
30gb|AY576261.1| Arabidopsis thaliana strain CS6764 cryptochrome 2... 40 4.0
31gb|AY576260.1| Arabidopsis thaliana strain CS1008 cryptochrome 2... 40 4.0
32gb|AY576259.1| Arabidopsis thaliana strain CS6098 cryptochrome 2... 40 4.0
33gb|AY576258.1| Arabidopsis thaliana strain CS6092 cryptochrome 2... 40 4.0
34gb|AY576257.1| Arabidopsis thaliana strain CS6630 cryptochrome 2... 40 4.0
35gb|AY576256.1| Arabidopsis thaliana strain CS6823 cryptochrome 2... 40 4.0
36gb|AY576255.1| Arabidopsis thaliana strain CS6703 cryptochrome 2... 40 4.0
37gb|AY576254.1| Arabidopsis thaliana strain CS6780 cryptochrome 2... 40 4.0
38gb|AY576253.1| Arabidopsis thaliana strain CS6865 cryptochrome 2... 40 4.0
39gb|AY576252.1| Arabidopsis thaliana strain CS6796 cryptochrome 2... 40 4.0
40gb|AY576251.1| Arabidopsis thaliana strain CS6770 cryptochrome 2... 40 4.0
41gb|AY576250.1| Arabidopsis thaliana strain CS6632 cryptochrome 2... 40 4.0
42gb|AY576249.1| Arabidopsis thaliana strain CS910 cryptochrome 2 ... 40 4.0
43gb|AY576248.1| Arabidopsis thaliana strain CS20 cryptochrome 2 (... 40 4.0
44gb|AY576247.1| Arabidopsis thaliana strain CS917 cryptochrome 2 ... 40 4.0
45gb|AY576246.1| Arabidopsis thaliana strain CS6867 cryptochrome 2... 40 4.0
46gb|AY576245.1| Arabidopsis thaliana strain CS6799 cryptochrome 2... 40 4.0
47gb|AY576244.1| Arabidopsis thaliana strain CS6924 cryptochrome 2... 40 4.0
48gb|AY576243.1| Arabidopsis thaliana strain CS6800 cryptochrome 2... 40 4.0
49gb|AY576242.1| Arabidopsis thaliana strain CS1202 cryptochrome 2... 40 4.0
50gb|AY576241.1| Arabidopsis thaliana strain CS1316 cryptochrome 2... 40 4.0
51gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome... 40 4.0
52emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 ... 40 4.0
53gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, compl... 40 4.0
54gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, comple... 40 4.0
55emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 ... 40 4.0
56emb|X99061.1|ATPHH1 A.thaliana PHH1 gene 40 4.0
57emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; se... 40 4.0
58emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chrom... 40 4.0
59emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 40 4.0
60gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, co... 40 4.0
61gb|AC080012.20| Homo sapiens 12 BAC RP11-714K16 (Roswell Park Ca... 40 4.0
62gb|AY057442.1| Arabidopsis thaliana ecotype Ler cryptochrome 2 (... 40 4.0
63gb|AY057441.1| Arabidopsis thaliana ecotype Cvi cryptochrome 2 (... 40 4.0
64gb|AC023114.5| Homo sapiens BAC clone RP11-266O8 from 15, comple... 40 4.0
65gb|U62549.1|ATU62549 Arabidopsis thaliana blue light photorecept... 40 4.0
66gb|AC107075.4| Homo sapiens BAC clone RP11-452N17 from 2, comple... 40 4.0
67dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 4.0
68emb|CT009709.22| Mouse DNA sequence from clone RP23-113L3 on chr... 40 4.0
69gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis tha... 40 4.0
70emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chro... 40 4.0 
>gb|AY112206.1| Zea mays CL9766_1 mRNA sequence
          Length = 674

 Score =  105 bits (53), Expect = 8e-20
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                       
Query: 207 ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
           ||||||||||||||||  ||||||||| | |||||||||||||||||| || ||||| ||
Sbjct: 184 ctactctatctggtaactcactgtgtgatccttccatataccactctcaagatacttctc 243

                                            
Query: 267 atataagctagcttctccatcatagttcactga 299
            || ||||||||||| |||||||||||||||||
Sbjct: 244 gtacaagctagcttcgccatcatagttcactga 276
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>ref|XM_450515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1103

 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
           ||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| || ||
Sbjct: 862 ctactctatctggtaatgcaccgtgtgatccttccatataccactctccaggtatttctc 803

                                                  
Query: 267 atataagctagcttctccatcatagttcactgaaagaac 305
            || ||||||||||| || || ||||||||||| |||||
Sbjct: 802 gtacaagctagcttcaccgtcgtagttcactgatagaac 764



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 catgcacaattgtagctatt 160
           ||||||||||||||||||||
Sbjct: 933 catgcacaattgtagctatt 914
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                           
Query: 207     ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
               ||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| || ||
Sbjct: 9423874 ctactctatctggtaatgcaccgtgtgatccttccatataccactctccaggtatttctc 9423933

                                                      
Query: 267     atataagctagcttctccatcatagttcactgaaagaac 305
                || ||||||||||| || || ||||||||||| |||||
Sbjct: 9423934 gtacaagctagcttcaccgtcgtagttcactgatagaac 9423972



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     catgcacaattgtagctatt 160
               ||||||||||||||||||||
Sbjct: 9423803 catgcacaattgtagctatt 9423822
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>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0024J13
          Length = 127614

 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                          
Query: 207    ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
              ||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| || ||
Sbjct: 107288 ctactctatctggtaatgcaccgtgtgatccttccatataccactctccaggtatttctc 107347

                                                     
Query: 267    atataagctagcttctccatcatagttcactgaaagaac 305
               || ||||||||||| || || ||||||||||| |||||
Sbjct: 107348 gtacaagctagcttcaccgtcgtagttcactgatagaac 107386



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    catgcacaattgtagctatt 160
              ||||||||||||||||||||
Sbjct: 107217 catgcacaattgtagctatt 107236
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>dbj|AK071737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109A10, full
           insert sequence
          Length = 1103

 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
           ||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| || ||
Sbjct: 862 ctactctatctggtaatgcaccgtgtgatccttccatataccactctccaggtatttctc 803

                                                  
Query: 267 atataagctagcttctccatcatagttcactgaaagaac 305
            || ||||||||||| || || ||||||||||| |||||
Sbjct: 802 gtacaagctagcttcaccgtcgtagttcactgatagaac 764



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 catgcacaattgtagctatt 160
           ||||||||||||||||||||
Sbjct: 933 catgcacaattgtagctatt 914
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>gb|BT023985.1| Zea mays clone EL01N0413G11 mRNA sequence
          Length = 1591

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 207  ctactctatctggtaatgcactgtgtggttcttccatataccactctcgaggtacttttc 266
            ||||||||||||||||  ||||| | | | ||||||||||||||     || ||||| ||
Sbjct: 1423 ctactctatctggtaactcactgggggatccttccatataccacgtggaagatacttctc 1364

                                            
Query: 267  atataagctagcttctccatcatagttcactg 298
             || ||||||||||| ||||||||||||||||
Sbjct: 1363 gtacaagctagcttcgccatcatagttcactg 1332
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>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1,
             complete sequence
          Length = 180744

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 161   cattctttcttcctattttgggc 183
             |||||||||||||||||||||||
Sbjct: 73812 cattctttcttcctattttgggc 73790
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>gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome 19, complete sequence
          Length = 180944

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    ttcattctttcttcctatttt 179
              |||||||||||||||||||||
Sbjct: 100236 ttcattctttcttcctatttt 100216
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>emb|AL139247.12| Human DNA sequence from clone RP1-52J10 on chromosome 1 Contains the
            SPRL3A gene for small proline rich-like (epidermal
            differentiation complex) 3A, the LEP14 gene for late
            envelope protein 14, the LEP13 gene for late envelope
            protein 13, a small proline rich-like (epidermal
            differentiation complex) 1B (SPRL1B) pseudogene, a novel
            gene, the SPRL1A gene for small proline rich-like
            (epidermal differentiation complex) 1A, the LEP11 gene
            for late envelope protein 11 and the SPRL1B gene for
            small proline rich-like (epidermal differentiation
            complex) 1B, complete sequence
          Length = 117084

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 67   catacagtaaataatttaatc 87
            |||||||||||||||||||||
Sbjct: 4595 catacagtaaataatttaatc 4615
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>emb|AJ508355.1|BMA508355 Brugia malayi ORF1, ORF2, ORF3 and ORF4 DNA and alt-1 gene
          Length = 32442

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 66    gcatacagtaaataatttaat 86
             |||||||||||||||||||||
Sbjct: 21830 gcatacagtaaataatttaat 21810
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>gb|AC125618.1| Homo sapiens 3 BAC RP11-510K16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 58110

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 218   ggtaatgcactgtgtggttcttcca 242
             ||||||||||||| |||||||||||
Sbjct: 42423 ggtaatgcactgtatggttcttcca 42399
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>gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, complete sequence
          Length = 167139

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   attcattctttcttcctattt 178
             |||||||||||||||||||||
Sbjct: 31996 attcattctttcttcctattt 31976
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>gb|AC024996.6| Homo sapiens chromosome 8, clone RP11-697C18, complete sequence
          Length = 177864

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   attcattctttcttcctattt 178
             |||||||||||||||||||||
Sbjct: 48966 attcattctttcttcctattt 48986
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>gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, complete sequence
          Length = 163998

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    tatctggtaatgcactgtgtg 233
              |||||||||||||||||||||
Sbjct: 127422 tatctggtaatgcactgtgtg 127442
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>gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 190789

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   ttcattctttcttcctatttt 179
             |||||||||||||||||||||
Sbjct: 59443 ttcattctttcttcctatttt 59423
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>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence
          Length = 163976

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    tatctggtaatgcactgtgtg 233
              |||||||||||||||||||||
Sbjct: 149841 tatctggtaatgcactgtgtg 149821
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>emb|AL713968.9| Mouse DNA sequence from clone RP23-387L21 on chromosome X, complete
             sequence
          Length = 100240

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 132   aaataacagcatgcacaattgtagctatt 160
             ||||||||||||| |||||| ||||||||
Sbjct: 13349 aaataacagcatgtacaattttagctatt 13321
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>ref|NM_100320.2| Arabidopsis thaliana CRY2 (CRYPTOCHROME 2) AT1G04400 (CRY2)
           transcript variant AT1G04400.1 mRNA, complete cds
          Length = 2350

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 158 ttctttcttcctattttggg 139
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>gb|AY486843.1| Hevea brasiliensis clone gHbCIRA2740 microsatellite sequence
          Length = 839

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  aatttgaatgatctctctct 51
           ||||||||||||||||||||
Sbjct: 209 aatttgaatgatctctctct 190
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>gb|AY576271.1| Arabidopsis thaliana strain CS6669 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576270.1| Arabidopsis thaliana strain CS6042 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576269.1| Arabidopsis thaliana strain CS6180 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576268.1| Arabidopsis thaliana strain CS6175 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576267.1| Arabidopsis thaliana strain CS1074 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3149

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 587 ttctttcttcctattttggg 568
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>gb|AY576266.1| Arabidopsis thaliana strain CS902 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576265.1| Arabidopsis thaliana strain CS6694 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576264.1| Arabidopsis thaliana strain CS6739 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576263.1| Arabidopsis thaliana strain CS6788 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576262.1| Arabidopsis thaliana strain CS6622 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576261.1| Arabidopsis thaliana strain CS6764 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576260.1| Arabidopsis thaliana strain CS1008 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576259.1| Arabidopsis thaliana strain CS6098 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3201

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576258.1| Arabidopsis thaliana strain CS6092 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576257.1| Arabidopsis thaliana strain CS6630 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576256.1| Arabidopsis thaliana strain CS6823 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576255.1| Arabidopsis thaliana strain CS6703 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576254.1| Arabidopsis thaliana strain CS6780 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576253.1| Arabidopsis thaliana strain CS6865 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576252.1| Arabidopsis thaliana strain CS6796 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576251.1| Arabidopsis thaliana strain CS6770 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576250.1| Arabidopsis thaliana strain CS6632 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576249.1| Arabidopsis thaliana strain CS910 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576248.1| Arabidopsis thaliana strain CS20 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576247.1| Arabidopsis thaliana strain CS917 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576246.1| Arabidopsis thaliana strain CS6867 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576245.1| Arabidopsis thaliana strain CS6799 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576244.1| Arabidopsis thaliana strain CS6924 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576243.1| Arabidopsis thaliana strain CS6800 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576242.1| Arabidopsis thaliana strain CS1202 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AY576241.1| Arabidopsis thaliana strain CS1316 cryptochrome 2 (CRY2) gene,
           complete cds
          Length = 3202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 592 ttctttcttcctattttggg 573
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>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ttcattctttcttcctattt 178
              ||||||||||||||||||||
Sbjct: 110587 ttcattctttcttcctattt 110606
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>emb|CR405683.10| Zebrafish DNA sequence from clone CH211-157B13 in linkage group 2,
              complete sequence
          Length = 166899

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     ataaatctgcatacagtaaataat 81
              |||||| |||||||||||||||||
Sbjct: 128230 ataaatatgcatacagtaaataat 128207
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>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ttcattctttcttcctattt 178
              ||||||||||||||||||||
Sbjct: 153615 ttcattctttcttcctattt 153634
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>gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, complete sequence
          Length = 170072

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   atcatagttcactgaaagaa 304
             ||||||||||||||||||||
Sbjct: 65407 atcatagttcactgaaagaa 65388
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>emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 in linkage group 3,
             complete sequence
          Length = 165674

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    ataaatctgcatacagtaaataat 81
             ||||||||||||||| ||||||||
Sbjct: 58219 ataaatctgcatacaataaataat 58242
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>emb|X99061.1|ATPHH1 A.thaliana PHH1 gene
          Length = 3353

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 642 ttctttcttcctattttggg 623
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>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5
          Length = 262202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   ttcatataagctagcttctccatc 287
             ||||||| ||||||||||||||||
Sbjct: 61897 ttcatatcagctagcttctccatc 61874
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>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5
          Length = 254050

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    acaatttgaatgatctctct 49
             ||||||||||||||||||||
Sbjct: 80336 acaatttgaatgatctctct 80355
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>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    ataaatctgcatacagtaaataat 81
             |||||| |||||||||||||||||
Sbjct: 48569 ataaatatgcatacagtaaataat 48546
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>gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, complete sequence
          Length = 170507

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 144   gcacaattgtagctattcattctttcttccta 175
             |||||| ||||| || ||||||||||||||||
Sbjct: 52741 gcacaactgtagttactcattctttcttccta 52772
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>gb|AC080012.20| Homo sapiens 12 BAC RP11-714K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99966

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tctgcatacagtaaataatt 82
             ||||||||||||||||||||
Sbjct: 92305 tctgcatacagtaaataatt 92324
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>gb|AY057442.1| Arabidopsis thaliana ecotype Ler cryptochrome 2 (CRY2) gene, complete
            cds
          Length = 4649

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  ttctttcttcctattttggg 182
            ||||||||||||||||||||
Sbjct: 1894 ttctttcttcctattttggg 1875
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>gb|AY057441.1| Arabidopsis thaliana ecotype Cvi cryptochrome 2 (CRY2) gene, complete
            cds
          Length = 4659

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  ttctttcttcctattttggg 182
            ||||||||||||||||||||
Sbjct: 1901 ttctttcttcctattttggg 1882
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>gb|AC023114.5| Homo sapiens BAC clone RP11-266O8 from 15, complete sequence
          Length = 164242

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ctttcttcctattttgggct 184
              ||||||||||||||||||||
Sbjct: 126164 ctttcttcctattttgggct 126183
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>gb|U62549.1|ATU62549 Arabidopsis thaliana blue light photoreceptor/photolyase homolog
           (PHH1) mRNA, complete cds
          Length = 2359

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 ttctttcttcctattttggg 182
           ||||||||||||||||||||
Sbjct: 158 ttctttcttcctattttggg 139
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>gb|AC107075.4| Homo sapiens BAC clone RP11-452N17 from 2, complete sequence
          Length = 176425

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    gtagctattcattctttctt 171
              ||||||||||||||||||||
Sbjct: 167909 gtagctattcattctttctt 167890
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     tcattctttcttcctatttt 179
               ||||||||||||||||||||
Sbjct: 2209064 tcattctttcttcctatttt 2209083
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>emb|CT009709.22| Mouse DNA sequence from clone RP23-113L3 on chromosome 16, complete
             sequence
          Length = 70995

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   attctttcttcctattttgg 181
             ||||||||||||||||||||
Sbjct: 16270 attctttcttcctattttgg 16289
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>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 107527

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ttctttcttcctattttggg 182
             ||||||||||||||||||||
Sbjct: 44933 ttctttcttcctattttggg 44914
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>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete
             sequence
          Length = 169745

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ttcattctttcttcctattt 178
             ||||||||||||||||||||
Sbjct: 92135 ttcattctttcttcctattt 92154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,975,422
Number of Sequences: 3902068
Number of extensions: 2975422
Number of successful extensions: 62593
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62484
Number of HSP's gapped (non-prelim): 109
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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