ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26l20 |
|---|---|
| Clone Library Name | barley_pub |
>TOP2_PEA (O24308) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (PsTopII) Length = 1462 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/52 (50%), Positives = 38/52 (73%) Frame = -2 Query: 570 QSKGMRQKVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMAS 415 QS G QK++ ++ +P + + S PEKKVR++R+SPFNKKSGS+L R A+ Sbjct: 1344 QSAG--QKLLTDMLQPAEGTGTS---PEKKVRKMRESPFNKKSGSILGRAAA 1390
>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1473 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Frame = -2 Query: 495 SPEKKVRRIRDSPFNKKSGSVLHRMA------STSTGVEDDEAPPSGSSAEPVA-PRRTT 337 SPEKKVR++R SPFNKKS SV+ R+A S+ + + SG ++ P+R Sbjct: 1383 SPEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSENVAGNSSSEKSGGDVSAISRPQRAN 1442 Query: 336 RERKAAVV 313 R + V+ Sbjct: 1443 RRKMTYVL 1450
>CIZ1_HUMAN (Q9ULV3) Cip1-interacting zinc finger protein (Nuclear protein| NP94) Length = 898 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = -2 Query: 510 NLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRE 331 NLS +P+K+ R + N+K S S + VED PP GS E PR T E Sbjct: 175 NLSGRNPQKQARTSSSTTPNRKDSS------SQTMPVEDKSDPPEGSE-EAAEPRMDTPE 227
>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3| Length = 3497 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = -2 Query: 549 KVMEEIFKPTDDSNLSAPSP--EKKVRRIRD--SPFNKKSGSVLHRMASTSTGVE 397 KV+E + P DDSN++ SP E++ + + D F+K++ +++++ T +E Sbjct: 1982 KVLESLSSPVDDSNVTLKSPISEEQPQNLDDRVREFDKQAKQMIYKLKLTKAKIE 2036
>ZBED1_HUMAN (O96006) Zinc finger BED domain-containing protein 1 (dREF homolog)| (Putative Ac-like transposable element) Length = 694 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = -2 Query: 570 QSKGMRQKVMEEIFKPTDDSNLSAPS--PEKKVRRIRDSPFNKKSGSVLHRMASTSTGVE 397 ++KG+ KV + ++P +D P P KK+ R P ++L + + GVE Sbjct: 500 EAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVE 559 Query: 396 DDE 388 D E Sbjct: 560 DQE 562
>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) (HFH-1l) Length = 400 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/67 (23%), Positives = 30/67 (44%) Frame = -2 Query: 549 KVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGS 370 KV+ + +P N +P + D F ++ + HR +++G+ +EAPP + Sbjct: 175 KVLRDPSRPWGKDNYWMLNPNSEYT-FADGVFRRRRKRLSHRTTVSASGLRPEEAPPGPA 233 Query: 369 SAEPVAP 349 AP Sbjct: 234 GTPQAAP 240
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = -2 Query: 495 SPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEA--------PPSGSSAEPVAPRRT 340 +PE ++ D P K S R + + V++ E+ PPS S+ +PV P T Sbjct: 1329 APELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPT 1388 Query: 339 TR 334 +R Sbjct: 1389 SR 1390
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -2 Query: 501 APSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRERKA 322 AP P+ RR+ + + GS LH + S D EA + EP+ P +E + Sbjct: 240 APYPQPPTRRLNPTAPPSRQGSELHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEGEP 299 Query: 321 AVV 313 V Sbjct: 300 PTV 302
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -2 Query: 501 APSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRERKA 322 AP P+ RR+ + + GS LH + S D EA + EP+ P +E + Sbjct: 240 APYPQPPTRRLNPTAPPSRQGSKLHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEGEP 299 Query: 321 AVV 313 V Sbjct: 300 PTV 302
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -2 Query: 501 APSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRERKA 322 AP P+ RR+ + + GS LH + S D EA + EP+ P +E + Sbjct: 240 APYPQPPTRRLNPTAPPSRQGSELHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEGEP 299 Query: 321 AVV 313 V Sbjct: 300 PTV 302
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -2 Query: 501 APSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRERKA 322 AP P+ RR+ + + GS LH + S D EA + EP+ P +E + Sbjct: 240 APYPQPPTRRLNPTAPPSRQGSELHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEGEP 299 Query: 321 AVV 313 V Sbjct: 300 PTV 302
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/65 (24%), Positives = 29/65 (44%) Frame = -2 Query: 525 PTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPR 346 P ++PSP+ K R P ++S R + + + +PPS S+ E +P Sbjct: 611 PPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSKHRKGSPPSRSNRETRSPP 670 Query: 345 RTTRE 331 + R+ Sbjct: 671 QNKRD 675
>TIG_BARQU (Q6FZK6) Trigger factor (TF)| Length = 469 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -2 Query: 555 RQKVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKS 442 ++ +EE+ K D+S+L+ PEKK + + +P KK+ Sbjct: 429 KEVTVEELMKEYDESDLTEKKPEKK-KGVEKTPIRKKA 465
>PROB_PROM9 (Q31B89) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 360 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = +2 Query: 383 GASSSSTPVEVLAILCRTEPLFLLKGESLILRT 481 G +ST EV+ LCR+ FLLKG LIL T Sbjct: 15 GTEETSTE-EVIETLCRSFTSFLLKGNKLILVT 46
>MPCP_YEAST (P23641) Mitochondrial phosphate carrier protein (Phosphate| transport protein) (PTP) (mPic 1) (Mitochondrial import receptor) (p32) Length = 311 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +2 Query: 344 LLGATGSAELPEGGASSSSTPVEVLAILCRTEPLFLLKGESLILRTFFSGEGALRLLSSV 523 L GA G G SS P++V+ + EP KG + +GEGA LL+ Sbjct: 22 LAGAIGC-----GSTHSSMVPIDVVKTRIQLEPTVYNKGMVGSFKQIIAGEGAGALLTGF 76 Query: 524 G 526 G Sbjct: 77 G 77
>UNG_HUMAN (P13051) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 313 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = -2 Query: 552 QKVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSG 373 QK + F P+ APSPE V+ + ++SG A + +++ P Sbjct: 4 QKTLYSFFSPSPARKRHAPSPEPAVQGTGVAGVPEESGDAAAIPAKKAPAGQEEPGTPPS 63 Query: 372 SSAEPVAPRRTTRERKAAVVYVA 304 S R R + AA++ +A Sbjct: 64 SPLSAEQLDRIQRNKAAALLRLA 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,580,332 Number of Sequences: 219361 Number of extensions: 1181592 Number of successful extensions: 3797 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3797 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
