ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags27a18 |
|---|---|
| Clone Library Name | barley_pub |
>SPR4_CAEEL (O17582) Suppressor of presenilin protein 4| Length = 1311 Score = 28.9 bits (63), Expect = 3.1 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 247 HQENHPWHGLVTCYSCDH 300 H + H W+ L CYSCD+ Sbjct: 1180 HLDRHGWNQLYKCYSCDY 1197
>TRMD_LACPL (Q88WJ2) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 246 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -3 Query: 327 AAVLLQPQPVVAAIASHQS---VPGMILLM 247 A +LLQPQP+ A+AS Q PG ++L+ Sbjct: 58 AGMLLQPQPIFDALASVQEKHPAPGRVILL 87
>KRFC_CHICK (P02450) Feather keratin I (Keratin gene C protein) (F-ker)| Length = 97 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = -3 Query: 333 QDAAVLLQPQPVVAAIASHQSVPGMILLMLKGIAAAGVRSEACVRCMFS 187 QD+ V++QP PVV ++PG IL AAG + A V + S Sbjct: 27 QDSRVVIQPSPVVV------TLPGPILSSFPQNTAAGSSTSAAVGSILS 69
>KRFB_MYCAM (Q98U05) Feather beta keratin (F-ker)| Length = 97 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 333 QDAAVLLQPQPVVAAIASHQSVPGMILLMLKGIAAAGVRSEACVRCMFSARSYSLA 166 QD+ V+++P PVV ++PG IL A G + A V + SA ++ Sbjct: 27 QDSRVIIEPSPVVV------TLPGPILSSFPQNTAVGSTTSAAVGSILSAEGVPIS 76
>ATS18_MOUSE (Q4VC17) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1219 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +1 Query: 271 GLVTCYSCDHGLG---LEKHCGVLESDHEGCNFF 363 G+ CDH LG + CGV + D+ C F+ Sbjct: 718 GICELVGCDHELGSKAVSDACGVCKGDNSTCKFY 751
>ZN11B_HUMAN (Q06732) Zinc finger protein 11B| Length = 778 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Frame = +1 Query: 157 SRQS*RVTSRREHASDTGFRSNSGCGDTL*-------HQENHPWHGLVTCYSCDHGLGLE 315 S +S +R H + ++ N+ CG T HQ H CY C + Sbjct: 395 SHKSALTLHQRTHTGEKPYQCNA-CGKTFYQKSDLTKHQRTHTGQKPYECYECGKSFCMN 453 Query: 316 KHCGVLESDHEG 351 H V + H G Sbjct: 454 SHLTVHQRTHTG 465
>KRFJ_COTJA (Q92012) Beta-keratin-related protein| Length = 108 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -3 Query: 345 VIALQDAAVLLQPQPVVAAIASHQSVPGMILLMLKGIAAAGVRSEACVRCMFSARS 178 V+ D++V +QP PVV ++PG IL A G + A V SA S Sbjct: 25 VLRCADSSVAIQPPPVVV------TLPGPILSSFPQSTAVGSTASAAVGSSLSAGS 74
>KRFJ_CHICK (O13152) Beta-keratin-related protein| Length = 108 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -3 Query: 345 VIALQDAAVLLQPQPVVAAIASHQSVPGMILLMLKGIAAAGVRSEACVRCMFSARS 178 V+ D++V +QP PVV ++PG IL A G + A V SA S Sbjct: 25 VLRCADSSVAIQPPPVVV------TLPGPILSSFPQSTAVGSTASAAVGSSLSAGS 74
>METH_CAEEL (Q09582) Probable methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1249 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +1 Query: 286 YSCDHGLGLEKHCGVLESDHE 348 ++C GLG E++C LE +H+ Sbjct: 1084 FACTAGLGAEEYCKTLEKNHD 1104
>ZN615_HUMAN (Q8N8J6) Zinc finger protein 615| Length = 555 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Frame = +1 Query: 187 REHASDTGFRSNS-GCGDTL*-----HQENHPWHGLVTCYSCDHGLGLEKHC 324 R H + F N G G TL HQ+ H L TC C G + KHC Sbjct: 188 RTHTGEKPFICNKCGKGFTLKNSLITHQQTHTGEKLYTCSECGKGFSM-KHC 238
>ATS18_HUMAN (Q8TE60) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1221 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +1 Query: 271 GLVTCYSCDHGLG---LEKHCGVLESDHEGCNFF 363 G+ CDH LG + CGV + D+ C F+ Sbjct: 718 GVCELVGCDHELGSKAVSDACGVCKGDNSTCKFY 751
>TNR27_MOUSE (Q8BX35) Tumor necrosis factor receptor superfamily member 27| (X-linked ectodysplasin-A2 receptor) (EDA-A2 receptor) Length = 297 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%) Frame = +1 Query: 250 QENH---PWHGLVTCYSCDHGLGLEKHCGVLESDHEGC 354 QEN W VTC C G L K CG E C Sbjct: 4 QENEYRDQWGRCVTCQQCGPGQELSKDCGYGEGGDAHC 41
>KR211_HUMAN (Q3LI58) Keratin-associated protein 21-1| Length = 79 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/51 (31%), Positives = 19/51 (37%) Frame = +1 Query: 208 GFRSNSGCGDTL*HQENHPWHGLVTCYSCDHGLGLEKHCGVLESDHEGCNF 360 G+ S SGCG G T Y C +G G H G GC + Sbjct: 19 GYGSGSGCGC-----------GYGTGYGCGYGCGFGSHYGCGYGTGYGCGY 58
>YDHK_ECOLI (P76186) Hypothetical transport protein ydhK| Length = 670 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%) Frame = -3 Query: 366 AEEVTALVIALQD--------AAVLLQPQPVVAAIASHQSVPGMILLM 247 + + TAL+ AL++ A++L QP+ A A+H+ V G IL M Sbjct: 173 SSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTM 220
>YDHK_ECO57 (Q8X638) Hypothetical transport protein ydhK| Length = 670 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%) Frame = -3 Query: 366 AEEVTALVIALQD--------AAVLLQPQPVVAAIASHQSVPGMILLM 247 + + TAL+ AL++ A++L QP+ A A+H+ V G IL M Sbjct: 173 SSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTM 220
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Frame = +2 Query: 221 TPAAAIPFSIRRIIPGTDW*LAIAATTGW------------GWRSTAASWRAITRAVTSS 364 T AA+P PGT W L +TT R+TA + + +T T+ Sbjct: 3115 TTTAALPHGTPSSTPGTTWILTEPSTTATVTVPTGSTATASSTRATAGTLKVLTSTATTP 3174 Query: 365 AIARTPAVP 391 + + A P Sbjct: 3175 TVISSRATP 3183
>MIZF_MOUSE (Q8K1K9) MBD2-interacting zinc finger protein (Methyl-CpG-binding| protein 2-interacting zinc finger protein) Length = 503 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Frame = +1 Query: 247 HQENHPWHGLVTCYSCDHGLGLEKHC------GVLESDHEGCNFFCHSSDS 381 H E+ P+ YSC + + L KH D E CNF S S Sbjct: 274 HSEDRPYKCDCCDYSCKNLIDLRKHLDTHSKESAYRCDFENCNFSARSLSS 324
>TNR6_MACNE (Q9BDN0) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +1 Query: 283 CYSCDHGLGLEKHCGVLESDHEGC----NFFCHSS 375 C CD G GLE + + C NFFC+S+ Sbjct: 104 CRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSA 138
>TNR6_MACFA (Q9TSN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +1 Query: 283 CYSCDHGLGLEKHCGVLESDHEGC----NFFCHSS 375 C CD G GLE + + C NFFC+S+ Sbjct: 104 CRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSA 138
>TNR6_CERTO (Q9BDN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +1 Query: 283 CYSCDHGLGLEKHCGVLESDHEGC----NFFCHSS 375 C CD G GLE + + C NFFC+S+ Sbjct: 104 CRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSA 138
>TNR6_MACMU (Q9BDP2) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 333 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +1 Query: 283 CYSCDHGLGLEKHCGVLESDHEGC----NFFCHSS 375 C CD G GLE + + C NFFC+S+ Sbjct: 104 CRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSA 138
>TNR6_HUMAN (P25445) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 335 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Frame = +1 Query: 283 CYSCDHGLGLEKHCGVLESDHEGC----NFFCHSS 375 C CD G GLE + + C NFFC+S+ Sbjct: 104 CRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNST 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,532,165 Number of Sequences: 219361 Number of extensions: 817697 Number of successful extensions: 2037 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2032 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
