>ref|XM_479811.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1596

 Score =  232 bits (117), Expect = 7e-58
 Identities = 217/250 (86%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  tctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatctt---gcacgt 235
            ||||||||||||||||||||||| ||||||||||||||||| |||||||||    |||| 
Sbjct: 1397 tctcaaaaatatttgtgcggaactgagtcgaagtcatcgtaatcgaatcttccaccacgc 1338

                                                                        
Query: 236  tcccttccactctgcaccttcatcaaaaatgcatgatcgcacgagatgttctgatcaatt 295
            || |||||| |||      |||| ||| ||||| |||||||||||||||||| |||||| 
Sbjct: 1337 tctcttccagtct------tcattaaatatgcaggatcgcacgagatgttctcatcaata 1284

                                                                        
Query: 296  gaggtcagcttcttggacaaagccatcaacctctgaatagaagagtcgatgtgctccacc 355
            || | ||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 1283 gaagacagcttcttggacaaagccatcaacctttgaatagacgagtcaatatgctcaacc 1224

                                                                        
Query: 356  atttcactacttttatattgctcaggatcttcattaaagctgaccatgccatccttctgg 415
            || ||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1223 atctcacagcttttatattgctcaggatcttcatgaaagctgaccatcccatccttctgg 1164

                      
Query: 416  tttatcgttg 425
            ||||| ||||
Sbjct: 1163 tttatggttg 1154

>dbj|AK099289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126C02, full
            insert sequence
          Length = 1542

 Score =  232 bits (117), Expect = 7e-58
 Identities = 217/250 (86%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  tctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatctt---gcacgt 235
            ||||||||||||||||||||||| ||||||||||||||||| |||||||||    |||| 
Sbjct: 1343 tctcaaaaatatttgtgcggaactgagtcgaagtcatcgtaatcgaatcttccaccacgc 1284

                                                                        
Query: 236  tcccttccactctgcaccttcatcaaaaatgcatgatcgcacgagatgttctgatcaatt 295
            || |||||| |||      |||| ||| ||||| |||||||||||||||||| |||||| 
Sbjct: 1283 tctcttccagtct------tcattaaatatgcaggatcgcacgagatgttctcatcaata 1230

                                                                        
Query: 296  gaggtcagcttcttggacaaagccatcaacctctgaatagaagagtcgatgtgctccacc 355
            || | ||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 1229 gaagacagcttcttggacaaagccatcaacctttgaatagacgagtcaatatgctcaacc 1170

                                                                        
Query: 356  atttcactacttttatattgctcaggatcttcattaaagctgaccatgccatccttctgg 415
            || ||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1169 atctcacagcttttatattgctcaggatcttcatgaaagctgaccatcccatccttctgg 1110

                      
Query: 416  tttatcgttg 425
            ||||| ||||
Sbjct: 1109 tttatggttg 1100

>dbj|AK058565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E02, full
            insert sequence
          Length = 1596

 Score =  232 bits (117), Expect = 7e-58
 Identities = 217/250 (86%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  tctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatctt---gcacgt 235
            ||||||||||||||||||||||| ||||||||||||||||| |||||||||    |||| 
Sbjct: 1397 tctcaaaaatatttgtgcggaactgagtcgaagtcatcgtaatcgaatcttccaccacgc 1338

                                                                        
Query: 236  tcccttccactctgcaccttcatcaaaaatgcatgatcgcacgagatgttctgatcaatt 295
            || |||||| |||      |||| ||| ||||| |||||||||||||||||| |||||| 
Sbjct: 1337 tctcttccagtct------tcattaaatatgcaggatcgcacgagatgttctcatcaata 1284

                                                                        
Query: 296  gaggtcagcttcttggacaaagccatcaacctctgaatagaagagtcgatgtgctccacc 355
            || | ||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct: 1283 gaagacagcttcttggacaaagccatcaacctttgaatagacgagtcaatatgctcaacc 1224

                                                                        
Query: 356  atttcactacttttatattgctcaggatcttcattaaagctgaccatgccatccttctgg 415
            || ||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1223 atctcacagcttttatattgctcaggatcttcatgaaagctgaccatcccatccttctgg 1164

                      
Query: 416  tttatcgttg 425
            ||||| ||||
Sbjct: 1163 tttatggttg 1154

>gb|AY108512.1| Zea mays PCO080956 mRNA sequence
          Length = 706

 Score =  165 bits (83), Expect = 1e-37
 Identities = 205/247 (82%), Gaps = 9/247 (3%)
 Strand = Plus / Minus

                                                                       
Query: 174 gatcatctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatcttgcac 233
           ||||| |||||||||| ||||| ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 704 gatcaactcaaaaatacttgtgtggaacagagtcgaagtcgtcgtagtcgaatcttccac 645

                                                                       
Query: 234 gttcccttccactctgcaccttcatcaaaaatgcatgatcgcacgagatgttctgatcaa 293
           | ||||||||         | |||||||| |||||  ||| || || |||||||||||||
Sbjct: 644 gatcccttcc---------cgtcatcaaatatgcagtatcacatgacatgttctgatcaa 594

                                                                       
Query: 294 ttgaggtcagcttcttggacaaagccatcaacctctgaatagaagagtcgatgtgctcca 353
           |||| | || |||||||||||| ||| |||| || || ||||| | ||| || |||||||
Sbjct: 593 ttgaagccaacttcttggacaatgccgtcaatctatggatagaggtgtcaatatgctcca 534

                                                                       
Query: 354 ccatttcactacttttatattgctcaggatcttcattaaagctgaccatgccatccttct 413
           |||| |||  |||||||||||| ||||||||||||| |||||||||||| |||||||| |
Sbjct: 533 ccatctcaacacttttatattgttcaggatcttcatgaaagctgaccattccatcctttt 474

                  
Query: 414 ggtttat 420
           |||||||
Sbjct: 473 ggtttat 467

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                           
Query: 324     acctctgaatagaagagtcgatgtgctccaccatttcactacttttatattgctcaggat 383
               |||| |||||||| ||||| || ||||| ||||| ||||  |||||||||||||||||||
Sbjct: 1047598 acctttgaatagacgagtcaatatgctcaaccatctcacagcttttatattgctcaggat 1047539

                                                         
Query: 384     cttcattaaagctgaccatgccatccttctggtttatcgttg 425
               |||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 1047538 cttcatgaaagctgaccatcccatccttctggtttatggttg 1047497



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                           
Query: 251     accttcatcaaaaatgcatgatcgcacgagatgttctgatcaattgaggtcagcttcttg 310
               |||||||| ||| ||||| |||||||||||||||||| |||||| || | ||||||||||
Sbjct: 1048219 accttcattaaatatgcaggatcgcacgagatgttctcatcaatagaagacagcttcttg 1048160

                                
Query: 311     gacaaagccatcaacct 327
               |||||||||||||||||
Sbjct: 1048159 gacaaagccatcaacct 1048143



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                  
Query: 179     tctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatctt 229
               ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1048377 tctcaaaaatatttgtgcggaactgagtcgaagtcatcgtaatcgaatctt 1048327

>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1005_B05
          Length = 144799

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 324   acctctgaatagaagagtcgatgtgctccaccatttcactacttttatattgctcaggat 383
             |||| |||||||| ||||| || ||||| ||||| ||||  |||||||||||||||||||
Sbjct: 76125 acctttgaatagacgagtcaatatgctcaaccatctcacagcttttatattgctcaggat 76066

                                                       
Query: 384   cttcattaaagctgaccatgccatccttctggtttatcgttg 425
             |||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 76065 cttcatgaaagctgaccatcccatccttctggtttatggttg 76024



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                         
Query: 251   accttcatcaaaaatgcatgatcgcacgagatgttctgatcaattgaggtcagcttcttg 310
             |||||||| ||| ||||| |||||||||||||||||| |||||| || | ||||||||||
Sbjct: 76746 accttcattaaatatgcaggatcgcacgagatgttctcatcaatagaagacagcttcttg 76687

                              
Query: 311   gacaaagccatcaacct 327
             |||||||||||||||||
Sbjct: 76686 gacaaagccatcaacct 76670



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                
Query: 179   tctcaaaaatatttgtgcggaaccgagtcgaagtcatcgtagtcgaatctt 229
             ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 76904 tctcaaaaatatttgtgcggaactgagtcgaagtcatcgtaatcgaatctt 76854

>gb|AC016994.8| Homo sapiens BAC clone RP11-19J8 from 2, complete sequence
          Length = 48827

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 65    agaaattacagggttcaaactt 86
             ||||||||||||||||||||||
Sbjct: 30412 agaaattacagggttcaaactt 30391

>gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosome 5, complete sequence
          Length = 229020

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    ttcactacttttatattgctc 378
              |||||||||||||||||||||
Sbjct: 115682 ttcactacttttatattgctc 115662

>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence
          Length = 242126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   ttcactacttttatattgctc 378
             |||||||||||||||||||||
Sbjct: 39941 ttcactacttttatattgctc 39921

>dbj|AK113755.1| Ciona intestinalis cDNA, clone:cicl008c20, full insert sequence
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 366  ttttatattgctcaggatctt 386
            |||||||||||||||||||||
Sbjct: 1650 ttttatattgctcaggatctt 1630

>gb|AC139638.14| Mus musculus chromosome 10, clone RP24-208F10, complete sequence
          Length = 154570

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaaaaattctaagagtaata 21
             ||||||||||||||||||||
Sbjct: 91873 aaaaaattctaagagtaata 91854

>gb|AC142211.3| Mus musculus BAC clone RP24-501B23 from chromosome 8, complete sequence
          Length = 175636

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ttcactacttttatattgct 377
             ||||||||||||||||||||
Sbjct: 69254 ttcactacttttatattgct 69235

>gb|AC102582.9| Mus musculus chromosome 9, clone RP23-312A24, complete sequence
          Length = 190790

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ctcaggacaaggctagcttg 142
              ||||||||||||||||||||
Sbjct: 133778 ctcaggacaaggctagcttg 133797

>gb|AC092108.4| Homo sapiens BAC clone RP11-1263I10 from 7, complete sequence
          Length = 26349

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   actctgcaccttcatcaaaa 263
             ||||||||||||||||||||
Sbjct: 22845 actctgcaccttcatcaaaa 22826

>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
          Length = 144248

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 294   ttgaggtcagcttcttggacaaag 317
             |||||| |||||||||||||||||
Sbjct: 89566 ttgaggccagcttcttggacaaag 89543

>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1
           (TaThf1) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 tattgctcaggatcttcatt 390
           ||||||||||||||||||||
Sbjct: 437 tattgctcaggatcttcatt 418

>gb|AY841794.1| Aeromonas hydrophila strain AH-3 polar flagellar assembly protein
           (flhA) gene, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 cccaaggcgctgatcatctc 182
           ||||||||||||||||||||
Sbjct: 862 cccaaggcgctgatcatctc 881

>gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180454

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    tgatcatctcaaaaatattt 192
              ||||||||||||||||||||
Sbjct: 167042 tgatcatctcaaaaatattt 167061

>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 909

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 tattgctcaggatcttcatt 390
           ||||||||||||||||||||
Sbjct: 471 tattgctcaggatcttcatt 452

>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 222518

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   tgatcatctcaaaaatattt 192
             ||||||||||||||||||||
Sbjct: 59873 tgatcatctcaaaaatattt 59892

>gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187657

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   tgcaccttcatcaaaaatgc 267
             ||||||||||||||||||||
Sbjct: 91724 tgcaccttcatcaaaaatgc 91743

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 298     ggtcagcttcttggacaaagccat 321
               |||||||| |||||||||||||||
Sbjct: 3219929 ggtcagctccttggacaaagccat 3219952

>gb|AC147212.4| Pan troglodytes BAC clone RP43-126P16 from chromosome 7, complete
             sequence
          Length = 150935

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   actctgcaccttcatcaaaa 263
             ||||||||||||||||||||
Sbjct: 33415 actctgcaccttcatcaaaa 33434

>gb|AC154785.2| Mus musculus BAC clone RP23-92M20 from chromosome 12, complete sequence
          Length = 231183

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aggacaaggctagcttgatg 145
             ||||||||||||||||||||
Sbjct: 45921 aggacaaggctagcttgatg 45940

>gb|AC011748.7| Homo sapiens BAC clone RP11-441M4 from 2, complete sequence
          Length = 127037

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     gcagaagttcccatcctttt 58
              ||||||||||||||||||||
Sbjct: 126103 gcagaagttcccatcctttt 126084

>gb|AC055712.13| Homo sapiens 3 BAC RP11-63K8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155056

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   tgctccaccatttcactactttta 370
             ||||||||||||||||| ||||||
Sbjct: 49868 tgctccaccatttcactgctttta 49891

>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    tcattaaagctgaccatgcc 405
              ||||||||||||||||||||
Sbjct: 378583 tcattaaagctgaccatgcc 378564

>emb|BX510986.8| Zebrafish DNA sequence from clone CH211-173P18 in linkage group 19,
             complete sequence
          Length = 157245

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   atcttcattaaagctgacca 401
             ||||||||||||||||||||
Sbjct: 39163 atcttcattaaagctgacca 39182

>gb|DQ124698.1| Aeromonas hydrophila strain AH-3 FliE (fliE), FliF (fliF), FliG (fliG),
             FliH (fliH), FliI (fliI), FliJ (fliJ), FliK (fliK), FliL
             (fliL), FliM (fliM), FliN (fliN), FliO (fliO), FliP
             (fliP), FliQ (fliQ), FliR (fliR), FlhB (flhB), FlhA
             (flhA), FlhF (flhF), FlhG (flhG), FliA (fliA), CheY
             (cheY), CheZ (cheZ), CheA (cheA), CheB (cheB), PomA
             (pomA), PomB (pomB), and CheW (cheW) genes, complete cds;
             and unknown genes
          Length = 29850

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   cccaaggcgctgatcatctc 182
             ||||||||||||||||||||
Sbjct: 16122 cccaaggcgctgatcatctc 16141

>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence
          Length = 222867

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    ttcactacttttatattgct 377
              ||||||||||||||||||||
Sbjct: 174197 ttcactacttttatattgct 174178


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,869,722
Number of Sequences: 3902068
Number of extensions: 3869722
Number of successful extensions: 66273
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66181
Number of HSP's gapped (non-prelim): 92
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)