ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26l02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC149267.1| Solanum demissum chromosome 5 clone PGEC747E24 ma... 42 0.94
2gb|AC144791.1| Solanum demissum chromosome 5 BAC PGEC668E02 geno... 42 0.94
3gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, com... 42 0.94
4gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, comple... 42 0.94
5gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome... 42 0.94
6gb|AC161815.4| Mus musculus BAC clone RP23-353C21 from chromosom... 42 0.94
7gb|AC139332.5| Mus musculus BAC clone RP24-113C21 from chromosom... 42 0.94
8dbj|AP006080.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 0.94
9gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 40 3.7
10gb|AC099695.15| Mus musculus chromosome 10, clone RP23-234P12, c... 40 3.7
11gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete s... 40 3.7
12gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, com... 40 3.7
13gb|AC147336.2| Pan troglodytes BAC clone CH251-70I12 from Y, com... 40 3.7
14gb|AC023591.8| Homo sapiens chromosome 15, clone RP11-768L13, co... 40 3.7
15gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, co... 40 3.7
16gb|AC004740.1| Homo sapiens PAC clone RP4-631B17 from 7, complet... 40 3.7
17emb|AL356241.8| Human DNA sequence from clone RP11-58K5 on chrom... 40 3.7
18emb|AL354806.22| Human DNA sequence from clone RP11-521J24 on ch... 40 3.7
19emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chr... 40 3.7
20emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on ch... 40 3.7
21gb|AC112509.4| Homo sapiens 3 BAC RP11-428B17 (Roswell Park Canc... 40 3.7
22emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on ch... 40 3.7
23emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, com... 40 3.7
24dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, c... 40 3.7
25dbj|BS000549.1| Pan troglodytes chromosome Y clone:PTB-240N05, c... 40 3.7
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 3.7
27gb|AC107071.3| Homo sapiens BAC clone RP11-348N12 from 4, comple... 40 3.7
28gb|AC087525.6| Homo sapiens chromosome 15, clone RP11-321G12, co... 40 3.7
29gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map... 40 3.7
30dbj|AK136946.1| Mus musculus 12 days embryo embryonic body betwe... 40 3.7
31gb|AC007390.4| Homo sapiens BAC clone RP11-423P10 from 2, comple... 40 3.7
32gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, comple... 40 3.7
33gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 40 3.7
34gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y... 40 3.7
35gb|BC043642.1| Homo sapiens cDNA clone IMAGE:3910609 40 3.7
36gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 40 3.7
37emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chro... 40 3.7
38emb|AL928564.8| Mouse DNA sequence from clone RP23-255J22 on chr... 40 3.7
39dbj|AP002078.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 3.7 
>gb|AC149267.1| Solanum demissum chromosome 5 clone PGEC747E24 map MAP_LOC, complete
             sequence
          Length = 92340

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 174   aaatagaaaataagataatttagat 198
             ||||| |||||||||||||||||||
Sbjct: 20057 aaatataaaataagataatttagat 20081
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>gb|AC144791.1| Solanum demissum chromosome 5 BAC PGEC668E02 genomic sequence, complete
             sequence
          Length = 142575

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 174   aaatagaaaataagataatttagat 198
             ||||| |||||||||||||||||||
Sbjct: 81063 aaatataaaataagataatttagat 81039
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>gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, complete sequence
          Length = 202882

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ataatttagatccggatttta 208
             |||||||||||||||||||||
Sbjct: 43292 ataatttagatccggatttta 43272
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>gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, complete sequence
          Length = 199117

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 49     ctcataaaacaacattaagcatagaaatt 77
              |||||||||||||||||| ||| ||||||
Sbjct: 167397 ctcataaaacaacattaatcatggaaatt 167369
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>gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome 12, complete sequence
          Length = 206383

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   ataatttagatccggatttta 208
             |||||||||||||||||||||
Sbjct: 85933 ataatttagatccggatttta 85953
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>gb|AC161815.4| Mus musculus BAC clone RP23-353C21 from chromosome 16, complete
             sequence
          Length = 197690

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 49    ctcataaaacaacattaagcatagaaatt 77
             |||||||||||||||||| ||| ||||||
Sbjct: 13400 ctcataaaacaacattaatcatggaaatt 13372
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>gb|AC139332.5| Mus musculus BAC clone RP24-113C21 from chromosome 5, complete sequence
          Length = 143802

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   taaatagaaaataagataatt 193
             |||||||||||||||||||||
Sbjct: 86419 taaatagaaaataagataatt 86399
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>dbj|AP006080.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT48M22, TM0118c,
             complete sequence
          Length = 91116

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   aaatagaaaataagataattt 194
             |||||||||||||||||||||
Sbjct: 39198 aaatagaaaataagataattt 39178
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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 233    atccaaaaccagaacaagaacaga 256
              |||||||| |||||||||||||||
Sbjct: 518146 atccaaaagcagaacaagaacaga 518169
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>gb|AC099695.15| Mus musculus chromosome 10, clone RP23-234P12, complete sequence
          Length = 169161

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   aaaaccagaacaagaacaga 256
             ||||||||||||||||||||
Sbjct: 39242 aaaaccagaacaagaacaga 39261
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>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence
          Length = 99811

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tctagttctcaatttctaaa 176
             ||||||||||||||||||||
Sbjct: 84559 tctagttctcaatttctaaa 84578
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>gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, complete sequence
          Length = 197052

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   caatttctaaatagaaaata 185
             ||||||||||||||||||||
Sbjct: 68585 caatttctaaatagaaaata 68566
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>gb|AC147336.2| Pan troglodytes BAC clone CH251-70I12 from Y, complete sequence
          Length = 194849

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   aatttctaaatagaaaataagata 190
             ||||| ||||||||||||||||||
Sbjct: 76708 aatttataaatagaaaataagata 76685
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>gb|AC023591.8| Homo sapiens chromosome 15, clone RP11-768L13, complete sequence
          Length = 171456

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    aatagaaaataagataattt 194
              ||||||||||||||||||||
Sbjct: 111608 aatagaaaataagataattt 111627
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>gb|AC146239.3| Pan troglodytes BAC clone CH251-176K11 from Y, complete sequence
          Length = 180132

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    aatttctaaatagaaaataagata 190
              ||||| ||||||||||||||||||
Sbjct: 168147 aatttataaatagaaaataagata 168124
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>gb|AC004740.1| Homo sapiens PAC clone RP4-631B17 from 7, complete sequence
          Length = 127270

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   taaatagaaaataagataat 192
             ||||||||||||||||||||
Sbjct: 24485 taaatagaaaataagataat 24466
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>emb|AL356241.8| Human DNA sequence from clone RP11-58K5 on chromosome 13, complete
              sequence
          Length = 171068

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    caatttctaaatagaaaataagat 189
              ||||||||||||||||||| ||||
Sbjct: 112336 caatttctaaatagaaaatcagat 112313
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>emb|AL354806.22| Human DNA sequence from clone RP11-521J24 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 198959

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     acatggcattactcataaaa 57
              ||||||||||||||||||||
Sbjct: 140880 acatggcattactcataaaa 140861
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>emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chromosome 13, complete
             sequence
          Length = 101091

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   agaaaataagataatttaga 197
             ||||||||||||||||||||
Sbjct: 83677 agaaaataagataatttaga 83696
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>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the
             5' end of a novel gene (MGC22805), a novel pseudogene
             (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family
             domain containing protein (KIAA1373 FLJ35627 FLJ33359), a
             novel gene (FLJ36021), the ACTA2 gene for actin alpha 2
             smooth muscle aorta, the TNFRSF6 gene for tumor necrosis
             factor receptor superfamily member 6 and two CpG islands,
             complete sequence
          Length = 187313

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   taaatagaaaataagataat 192
             ||||||||||||||||||||
Sbjct: 74598 taaatagaaaataagataat 74579
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>gb|AC112509.4| Homo sapiens 3 BAC RP11-428B17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   aatttctaaatagaaaataa 186
             ||||||||||||||||||||
Sbjct: 18722 aatttctaaatagaaaataa 18703
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>emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on chromosome 6p21.3-22.2.
             Contains the gene for KIAA0426 (C2H2 type zinc finger
             protein), the gene for a novel C2H2 type zinc finger
             protein, a COX11 (COX11 (yeast) homolog, cytochrome c
             oxidase assembly protein) pseudogene, the olfactory
             receptor 2E1 pseudogene OR2E1P, the 3' end of a glutathion
             peroxidase pseudogene, ESTs, STSs, GSS and three CpG
             islands, complete sequence
          Length = 128779

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   taaatagaaaataagataat 192
             ||||||||||||||||||||
Sbjct: 12568 taaatagaaaataagataat 12549
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>emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4
          Length = 312430

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 233    atccaaaaccagaacaagaacaga 256
              |||||||| |||||||||||||||
Sbjct: 234707 atccaaaagcagaacaagaacaga 234730
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>dbj|BS000554.1| Pan troglodytes chromosome Y clone:PTB-334B21, complete sequences
          Length = 129327

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  aatttctaaatagaaaataagata 190
            ||||| ||||||||||||||||||
Sbjct: 5895 aatttataaatagaaaataagata 5918
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>dbj|BS000549.1| Pan troglodytes chromosome Y clone:PTB-240N05, complete sequences
          Length = 148562

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    aatttctaaatagaaaataagata 190
              ||||| ||||||||||||||||||
Sbjct: 142315 aatttataaatagaaaataagata 142338
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 167      aatttctaaatagaaaataagata 190
                ||||| ||||||||||||||||||
Sbjct: 16473063 aatttataaatagaaaataagata 16473040
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>gb|AC107071.3| Homo sapiens BAC clone RP11-348N12 from 4, complete sequence
          Length = 110794

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   tcaatttctaaatagaaaat 184
             ||||||||||||||||||||
Sbjct: 46580 tcaatttctaaatagaaaat 46561
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>gb|AC087525.6| Homo sapiens chromosome 15, clone RP11-321G12, complete sequence
          Length = 157590

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    aatagaaaataagataattt 194
              ||||||||||||||||||||
Sbjct: 117817 aatagaaaataagataattt 117798
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>gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map TEn5, complete
             sequence
          Length = 92612

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   tcaatttctaaatagaaaataaga 188
             |||| |||||||||||||||||||
Sbjct: 73138 tcaaattctaaatagaaaataaga 73161
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>dbj|AK136946.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430001A19 product:unclassifiable, full insert
           sequence
          Length = 3299

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 237 aaaaccagaacaagaacaga 256
           ||||||||||||||||||||
Sbjct: 883 aaaaccagaacaagaacaga 864
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>gb|AC007390.4| Homo sapiens BAC clone RP11-423P10 from 2, complete sequence
          Length = 131011

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ataacaacagtatagactgc 30
             ||||||||||||||||||||
Sbjct: 44967 ataacaacagtatagactgc 44986
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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    aatttctaaatagaaaataa 186
              ||||||||||||||||||||
Sbjct: 160311 aatttctaaatagaaaataa 160292
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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   taaatagaaaataagataat 192
             ||||||||||||||||||||
Sbjct: 57597 taaatagaaaataagataat 57578
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>gb|AC007244.2|AC007244 Homo sapiens BAC clone RP11-207L19 from Y, complete sequence
          Length = 184977

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  aatttctaaatagaaaataagata 190
            ||||| ||||||||||||||||||
Sbjct: 8060 aatttataaatagaaaataagata 8083
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>gb|BC043642.1| Homo sapiens cDNA clone IMAGE:3910609
          Length = 3328

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   ataacaacagtatagactgc 30
            ||||||||||||||||||||
Sbjct: 2138 ataacaacagtatagactgc 2119
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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete
             sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   caaaaccagaacaagaacag 255
             ||||||||||||||||||||
Sbjct: 87354 caaaaccagaacaagaacag 87335
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>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete
             sequence
          Length = 199774

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   aatttctaaatagaaaataa 186
             ||||||||||||||||||||
Sbjct: 62310 aatttctaaatagaaaataa 62329
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>emb|AL928564.8| Mouse DNA sequence from clone RP23-255J22 on chromosome 2, complete
              sequence
          Length = 223337

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    aatagaaaataagataattt 194
              ||||||||||||||||||||
Sbjct: 150452 aatagaaaataagataattt 150471
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>dbj|AP002078.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2126N15, complete
             sequence
          Length = 107264

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   tcaatttctaaatagaaaat 184
             ||||||||||||||||||||
Sbjct: 67207 tcaatttctaaatagaaaat 67226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,244,994
Number of Sequences: 3902068
Number of extensions: 2244994
Number of successful extensions: 47544
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47467
Number of HSP's gapped (non-prelim): 77
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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