ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags26k20 |
|---|---|
| Clone Library Name | barley_pub |
>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)| Length = 2804 Score = 37.0 bits (84), Expect = 0.048 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Frame = -2 Query: 622 SQSDRKTSGSMASSDVLNVNQLMESVHETARQVANVPVSTNPVSYDQMKS----QCESLV 455 S+S+ K S S + N N+L+E+ + V T + ++ ++ Q ES + Sbjct: 609 SKSEMKQSESRLAESKPNENRLVETKSSENKLETKVETQTEELKQNESRTTECKQNESTI 668 Query: 454 MEKQQKMSVLMSFK---HSRTDSRSSIGENGPETNESSAQSEPESHLTRKD 311 +E +Q + L K + + + RS ++ PET + +S PE+ + D Sbjct: 669 VEPKQNENRLSDTKPNDNKQNNGRSETTKSRPETPKQKGESRPETPKQKSD 719
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 35.4 bits (80), Expect = 0.14 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Frame = -2 Query: 622 SQSDRKTSGSMASSDVLNVNQLMESVHETARQVANVPVSTNPVSYDQMKS----QCESLV 455 S+S+ K + S S N NQL ES ++ T + ++ K+ Q ES V Sbjct: 609 SKSEMKQNESRLSESKPNENQLGESKSNESKLETKTETPTEELKQNENKTTESKQSESAV 668 Query: 454 MEKQQKMSVLMSFK---HSRTDSRSSIGENGPETNESSAQSEPES 329 +E +Q + K + + ++RS + PET + A+S PE+ Sbjct: 669 VEPKQNENRPCDTKPNDNKQNNTRSENTKARPETPKQKAESRPET 713
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 34.3 bits (77), Expect = 0.31 Identities = 25/70 (35%), Positives = 32/70 (45%) Frame = -2 Query: 514 PVSTNPVSYDQMKSQCESLVMEKQQKMSVLMSFKHSRTDSRSSIGENGPETNESSAQSEP 335 P TNPV+ + +C V EKQ K+SV + K R S S+I P S QSE Sbjct: 667 PTETNPVTSNS-DEECNETVKEKQ-KLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSET 724 Query: 334 ESHLTRKDYM 305 + D M Sbjct: 725 VDQNSDSDEM 734
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 34.3 bits (77), Expect = 0.31 Identities = 25/70 (35%), Positives = 32/70 (45%) Frame = -2 Query: 514 PVSTNPVSYDQMKSQCESLVMEKQQKMSVLMSFKHSRTDSRSSIGENGPETNESSAQSEP 335 P TNPV+ + +C V EKQ K+SV + K R S S+I P S QSE Sbjct: 667 PTETNPVTSNS-DEECNETVKEKQ-KLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSET 724 Query: 334 ESHLTRKDYM 305 + D M Sbjct: 725 VDQNSDSDEM 734
>A36DE_DROME (Q9V3R1) Accessory gland protein Acp36DE precursor| Length = 912 Score = 32.7 bits (73), Expect = 0.90 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Frame = -2 Query: 622 SQSDRKTSGSMASSDVLNVNQLMESVHETARQVANVPVS-----TNPVSYDQMKSQCESL 458 SQS +T AS N + ++ ++ R + N PVS + S + + Q +S Sbjct: 192 SQSQSQTQSQSASQSESNASSQFQAQEQSNRLLENPPVSESQSQSESQSQSESQKQSQSQ 251 Query: 457 VMEKQQKMSVLMSFKHSRTDSRSSIGENGPETNESSAQSEPESHL 323 +QQ + L + + S +S QS+ +S+L Sbjct: 252 SQRQQQIQTQLQILRQLQQKSNEQSAAQSASQIQSQRQSDSQSNL 296
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/67 (35%), Positives = 31/67 (46%) Frame = -2 Query: 505 TNPVSYDQMKSQCESLVMEKQQKMSVLMSFKHSRTDSRSSIGENGPETNESSAQSEPESH 326 TNPV+ + +C V EKQ K+SV + K R S S+I P S QSE Sbjct: 670 TNPVTSNS-DEECNETVKEKQ-KLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSETVDQ 727 Query: 325 LTRKDYM 305 + D M Sbjct: 728 NSDSDEM 734
>TLM_MOUSE (P17408) Oncogene tlm| Length = 317 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +3 Query: 402 VLECLKLMRTDIFCCFSITRDS 467 VL C+ LM D+F CFS RDS Sbjct: 283 VLICISLMTKDVFNCFSAIRDS 304
>BIOW_BACSU (P53559) 6-carboxyhexanoate--CoA ligase (EC 6.2.1.14) (Pimeloyl-CoA| synthase) Length = 259 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -2 Query: 613 DRKTSGSMASSDVLNVNQLMESVHETARQVANVPVSTNPVSYDQMKSQCESLVMEKQ 443 ++ S S D + + E VHE+ + + +PV TN VS + + L++EK+ Sbjct: 48 EKGLSHSRGKPDFMQIQ--FEEVHESIKTIQPLPVHTNEVSCPEEGQKLARLLLEKE 102
>YQL7_SCHPO (Q9UU86) Hypothetical protein C1827.07c in chromosome III| Length = 682 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/87 (19%), Positives = 42/87 (48%) Frame = -2 Query: 577 VLNVNQLMESVHETARQVANVPVSTNPVSYDQMKSQCESLVMEKQQKMSVLMSFKHSRTD 398 +LN ++L + H AR+ T VSY ++KS+ ++ +++ + ++ ++H Sbjct: 137 ILNFSRLQPAYHIPARKSVPTDAYTPMVSYRKLKSKLKTTLLDFYDYLKLVSQYQHLNQQ 196 Query: 397 SRSSIGENGPETNESSAQSEPESHLTR 317 + I + +T + Q +++R Sbjct: 197 AFRKIVKKYDKTLHTDLQGFWVDYMSR 223
>VIT_ACITR (Q90243) Vitellogenin precursor (VTG) [Contains: Lipovitellin I| (LVI); Phosvitin (PV); Lipovitellin II (LVII)] (Fragment) Length = 1677 Score = 30.0 bits (66), Expect = 5.8 Identities = 26/104 (25%), Positives = 45/104 (43%) Frame = -2 Query: 622 SQSDRKTSGSMASSDVLNVNQLMESVHETARQVANVPVSTNPVSYDQMKSQCESLVMEKQ 443 S S +S S +SS + ME E + N+ + + Q K++ + +++ Sbjct: 1102 SSSSSSSSSSSSSSSSSSQQSRMEKRMEQDKLTENLERDRDHMRGKQSKNKKQEWKNKQK 1161 Query: 442 QKMSVLMSFKHSRTDSRSSIGENGPETNESSAQSEPESHLTRKD 311 + L S S + S SS G N ++ SS+ S SH R + Sbjct: 1162 KHHKQLPS--SSSSSSSSSSGSNSSSSSSSSSSSSSRSHNHRNN 1203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,974,704 Number of Sequences: 219361 Number of extensions: 1426090 Number of successful extensions: 3445 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3445 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
