Clone Information

BLAST Search Result

Clone Name	rbags26k17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	426	e-116
2	emb\|AL713904.3\|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306...	426	e-116
3	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	426	e-116
4	emb\|AL928754.2\|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa...	426	e-116
5	dbj\|AK064196.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	418	e-114
6	gb\|AC133450.6\| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom...	76	2e-10
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	76	2e-10
8	gb\|AC107207.9\| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom...	76	2e-10
9	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	2e-10
10	dbj\|AK068827.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	2e-10
11	ref\|XM_476441.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.14
12	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
13	dbj\|AP005165.4\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
14	dbj\|AP006541.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	46	0.14
15	dbj\|AP006538.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	46	0.14
16	ref\|NM_114938.2\| Arabidopsis thaliana unknown protein AT3G50780 ...	42	2.2
17	ref\|XM_850991.1\| PREDICTED: Canis familiaris hypothetical protei...	42	2.2
18	ref\|XM_850650.1\| PREDICTED: Canis familiaris similar to HMG-BOX ...	42	2.2
19	ref\|XM_535728.2\| PREDICTED: Canis familiaris similar to HMG-BOX ...	42	2.2
20	ref\|XM_850554.1\| PREDICTED: Canis familiaris similar to HMG-BOX ...	42	2.2
21	emb\|AL049862.1\|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BA...	42	2.2
22	gb\|BT005113.1\| Arabidopsis thaliana clone U20469 unknown protein...	42	2.2
23	gb\|BT002970.1\| Arabidopsis thaliana clone RAFL15-22-E11 (R20469)...	42	2.2
24	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	42	2.2
25	gb\|AC153156.1\| Ornithorhynchus anatinus chromosome UNK clone OAB...	40	8.8
26	gb\|AC161821.4\| Pan troglodytes BAC clone CH251-507E3 from chromo...	40	8.8
27	ref\|XM_871969.1\| PREDICTED: Bos taurus similar to HMG-BOX transc...	40	8.8
28	ref\|XM_612509.2\| PREDICTED: Bos taurus similar to HMG-BOX transc...	40	8.8
29	ref\|XM_871772.1\| PREDICTED: Bos taurus similar to HMG-BOX transc...	40	8.8
30	gb\|AC002480.1\| Homo sapiens BAC clone GS1-55K18 from 7, complete...	40	8.8
31	gb\|AC142337.1\| Pan troglodytes BAC clone RP43-39F23 from 7, comp...	40	8.8
32	ref\|XM_499959.1\| Yarrowia lipolytica CLIB122, YALI0A10791g predi...	40	8.8
33	gb\|AE008911.1\| Salmonella typhimurium LT2, section 215 of 220 of...	40	8.8
34	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	8.8
35	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	40	8.8
36	emb\|BX294186.9\| Zebrafish DNA sequence from clone DKEY-170O10 in...	40	8.8
37	gb\|AC161278.2\| Pan troglodytes BAC clone CH251-486B7 from chromo...	40	8.8
38	emb\|CT863710.2\| Medicago truncatula chromosome 5 clone mth2-52h1...	40	8.8
39	emb\|CR388007.7\| Zebrafish DNA sequence from clone DKEY-22G9 in l...	40	8.8
40	gb\|AY103557.1\| Zea mays PCO070710 mRNA sequence	40	8.8
41	gb\|AE017220.1\| Salmonella enterica subsp. enterica serovar Chole...	40	8.8
42	gb\|BC099167.1\| Rattus norvegicus polymerase (RNA) III (DNA direc...	40	8.8
43	emb\|AL929172.6\| Zebrafish DNA sequence from clone DKEYP-46C10 in...	40	8.8
44	ref\|NM_001031653.1\| Rattus norvegicus polymerase (RNA) III (DNA ...	40	8.8
45	emb\|CR382127.1\| Yarrowia lipolytica chromosome A of strain CLIB1...	40	8.8

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  426 bits (215), Expect = e-116
 Identities = 399/460 (86%), Gaps = 4/460 (0%)
 Strand = Plus / Minus

                                                                            
Query: 179      tttcaagatgagcttctgtttgatcataggacagacattaccttgcctggttgacataag 238
                ||||||||||| ||||||| ||||||||    | |||||||||||||||  |||||||||
Sbjct: 25081153 tttcaagatgaacttctgtctgatcata----aaacattaccttgcctgactgacataag 25081098

                                                                            
Query: 239      gtctgacgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttat 298
                | ||||| |||||||| ||||||||||| |||||||||||||| | ||| || || ||||
Sbjct: 25081097 gcctgacaaaagtccttctccaccatacttcaaatgccctctggagattagggcaattat 25081038

                                                                            
Query: 299      cgcctaatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaag 358
                | ||||| |||||||| ||||| ||||||| |||||| || |||||||| |||||||| |
Sbjct: 25081037 cccctaacttcaagaatctcccaagccatgccagtaacatggaccgctgatcttccaagg 25080978

                                                                            
Query: 359      gaagtgtcaggattgtctgcccaatcccttcctcgacaagcttcctatcaaatgaccggc 418
                |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 25080977 gaagtgtcaggattgtctgcccgatcccttcctcgacgagcttcctatcgaatgaccggc 25080918

                                                                            
Query: 419      agctgcattgtagccatgagtagtcatcgatgagtgcttgcagccagacttgcaggagaa 478
                |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |
Sbjct: 25080917 agctgcattgtaaccatgagtagtcatcaatgagtggttgcagccagacttgcaagagga 25080858

                                                                            
Query: 479      gaagacgagtgtccttggacggaagcatttctcctcttccaatgccaacaaagagccttg 538
                ||||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 25080857 gaagacgggtgttcttggatggaagcatctctcctcttccaattccgacaaaaagccttg 25080798

                                                                            
Query: 539      ctgttatactgctaactgtgtggcgagaggcgattggcaattttgcatgtaatgacgcaa 598
                |||| |||| |||||| ||||| |||||||| |  ||||||||| ||||||||   ||||
Sbjct: 25080797 ctgtgatacagctaacagtgtgacgagaggcaaccggcaattttccatgtaattctgcaa 25080738

                                                        
Query: 599      gctcactttggcttgcccacatgaccacaaaatcatcgca 638
                 ||  |||||| ||||||| |   ||||||||||||||||
Sbjct: 25080737 tcttgctttggtttgcccatagagccacaaaatcatcgca 25080698



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 73/89 (82%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                            
Query: 104      tcatgtccactatcagattgaccacgacaatccacgaaagaatct---atgggctacaat 160
                |||||||||  ||||||||||||| |||||||  | |||||||||   ||  |||| |  
Sbjct: 25081285 tcatgtccatcatcagattgaccaagacaatctcccaaagaatctacgataagctaaatg 25081226

                                             
Query: 161      cactactcttccctatcgtttcaagatga 189
                ||||||||||||||||  |||||||||||
Sbjct: 25081225 cactactcttccctatattttcaagatga 25081197

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>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121563

 Score =  426 bits (215), Expect = e-116
 Identities = 399/460 (86%), Gaps = 4/460 (0%)
 Strand = Plus / Plus

                                                                         
Query: 179   tttcaagatgagcttctgtttgatcataggacagacattaccttgcctggttgacataag 238
             ||||||||||| ||||||| ||||||||    | |||||||||||||||  |||||||||
Sbjct: 50326 tttcaagatgaacttctgtctgatcata----aaacattaccttgcctgactgacataag 50381

                                                                         
Query: 239   gtctgacgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttat 298
             | ||||| |||||||| ||||||||||| |||||||||||||| | ||| || || ||||
Sbjct: 50382 gcctgacaaaagtccttctccaccatacttcaaatgccctctggagattagggcaattat 50441

                                                                         
Query: 299   cgcctaatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaag 358
             | ||||| |||||||| ||||| ||||||| |||||| || |||||||| |||||||| |
Sbjct: 50442 cccctaacttcaagaatctcccaagccatgccagtaacatggaccgctgatcttccaagg 50501

                                                                         
Query: 359   gaagtgtcaggattgtctgcccaatcccttcctcgacaagcttcctatcaaatgaccggc 418
             |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 50502 gaagtgtcaggattgtctgcccgatcccttcctcgacgagcttcctatcgaatgaccggc 50561

                                                                         
Query: 419   agctgcattgtagccatgagtagtcatcgatgagtgcttgcagccagacttgcaggagaa 478
             |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |
Sbjct: 50562 agctgcattgtaaccatgagtagtcatcaatgagtggttgcagccagacttgcaagagga 50621

                                                                         
Query: 479   gaagacgagtgtccttggacggaagcatttctcctcttccaatgccaacaaagagccttg 538
             ||||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 50622 gaagacgggtgttcttggatggaagcatctctcctcttccaattccgacaaaaagccttg 50681

                                                                         
Query: 539   ctgttatactgctaactgtgtggcgagaggcgattggcaattttgcatgtaatgacgcaa 598
             |||| |||| |||||| ||||| |||||||| |  ||||||||| ||||||||   ||||
Sbjct: 50682 ctgtgatacagctaacagtgtgacgagaggcaaccggcaattttccatgtaattctgcaa 50741

                                                     
Query: 599   gctcactttggcttgcccacatgaccacaaaatcatcgca 638
              ||  |||||| ||||||| |   ||||||||||||||||
Sbjct: 50742 tcttgctttggtttgcccatagagccacaaaatcatcgca 50781



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 73/89 (82%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                         
Query: 104   tcatgtccactatcagattgaccacgacaatccacgaaagaatct---atgggctacaat 160
             |||||||||  ||||||||||||| |||||||  | |||||||||   ||  |||| |  
Sbjct: 50194 tcatgtccatcatcagattgaccaagacaatctcccaaagaatctacgataagctaaatg 50253

                                          
Query: 161   cactactcttccctatcgtttcaagatga 189
             ||||||||||||||||  |||||||||||
Sbjct: 50254 cactactcttccctatattttcaagatga 50282

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  426 bits (215), Expect = e-116
 Identities = 399/460 (86%), Gaps = 4/460 (0%)
 Strand = Plus / Minus

                                                                            
Query: 179      tttcaagatgagcttctgtttgatcataggacagacattaccttgcctggttgacataag 238
                ||||||||||| ||||||| ||||||||    | |||||||||||||||  |||||||||
Sbjct: 25009355 tttcaagatgaacttctgtctgatcata----aaacattaccttgcctgactgacataag 25009300

                                                                            
Query: 239      gtctgacgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttat 298
                | ||||| |||||||| ||||||||||| |||||||||||||| | ||| || || ||||
Sbjct: 25009299 gcctgacaaaagtccttctccaccatacttcaaatgccctctggagattagggcaattat 25009240

                                                                            
Query: 299      cgcctaatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaag 358
                | ||||| |||||||| ||||| ||||||| |||||| || |||||||| |||||||| |
Sbjct: 25009239 cccctaacttcaagaatctcccaagccatgccagtaacatggaccgctgatcttccaagg 25009180

                                                                            
Query: 359      gaagtgtcaggattgtctgcccaatcccttcctcgacaagcttcctatcaaatgaccggc 418
                |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 25009179 gaagtgtcaggattgtctgcccgatcccttcctcgacgagcttcctatcgaatgaccggc 25009120

                                                                            
Query: 419      agctgcattgtagccatgagtagtcatcgatgagtgcttgcagccagacttgcaggagaa 478
                |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |
Sbjct: 25009119 agctgcattgtaaccatgagtagtcatcaatgagtggttgcagccagacttgcaagagga 25009060

                                                                            
Query: 479      gaagacgagtgtccttggacggaagcatttctcctcttccaatgccaacaaagagccttg 538
                ||||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 25009059 gaagacgggtgttcttggatggaagcatctctcctcttccaattccgacaaaaagccttg 25009000

                                                                            
Query: 539      ctgttatactgctaactgtgtggcgagaggcgattggcaattttgcatgtaatgacgcaa 598
                |||| |||| |||||| ||||| |||||||| |  ||||||||| ||||||||   ||||
Sbjct: 25008999 ctgtgatacagctaacagtgtgacgagaggcaaccggcaattttccatgtaattctgcaa 25008940

                                                        
Query: 599      gctcactttggcttgcccacatgaccacaaaatcatcgca 638
                 ||  |||||| ||||||| |   ||||||||||||||||
Sbjct: 25008939 tcttgctttggtttgcccatagagccacaaaatcatcgca 25008900



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 73/89 (82%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                            
Query: 104      tcatgtccactatcagattgaccacgacaatccacgaaagaatct---atgggctacaat 160
                |||||||||  ||||||||||||| |||||||  | |||||||||   ||  |||| |  
Sbjct: 25009487 tcatgtccatcatcagattgaccaagacaatctcccaaagaatctacgataagctaaatg 25009428

                                             
Query: 161      cactactcttccctatcgtttcaagatga 189
                ||||||||||||||||  |||||||||||
Sbjct: 25009427 cactactcttccctatattttcaagatga 25009399

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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  426 bits (215), Expect = e-116
 Identities = 399/460 (86%), Gaps = 4/460 (0%)
 Strand = Plus / Plus

                                                                         
Query: 179   tttcaagatgagcttctgtttgatcataggacagacattaccttgcctggttgacataag 238
             ||||||||||| ||||||| ||||||||    | |||||||||||||||  |||||||||
Sbjct: 26018 tttcaagatgaacttctgtctgatcata----aaacattaccttgcctgactgacataag 26073

                                                                         
Query: 239   gtctgacgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttat 298
             | ||||| |||||||| ||||||||||| |||||||||||||| | ||| || || ||||
Sbjct: 26074 gcctgacaaaagtccttctccaccatacttcaaatgccctctggagattagggcaattat 26133

                                                                         
Query: 299   cgcctaatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaag 358
             | ||||| |||||||| ||||| ||||||| |||||| || |||||||| |||||||| |
Sbjct: 26134 cccctaacttcaagaatctcccaagccatgccagtaacatggaccgctgatcttccaagg 26193

                                                                         
Query: 359   gaagtgtcaggattgtctgcccaatcccttcctcgacaagcttcctatcaaatgaccggc 418
             |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 26194 gaagtgtcaggattgtctgcccgatcccttcctcgacgagcttcctatcgaatgaccggc 26253

                                                                         
Query: 419   agctgcattgtagccatgagtagtcatcgatgagtgcttgcagccagacttgcaggagaa 478
             |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |
Sbjct: 26254 agctgcattgtaaccatgagtagtcatcaatgagtggttgcagccagacttgcaagagga 26313

                                                                         
Query: 479   gaagacgagtgtccttggacggaagcatttctcctcttccaatgccaacaaagagccttg 538
             ||||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 26314 gaagacgggtgttcttggatggaagcatctctcctcttccaattccgacaaaaagccttg 26373

                                                                         
Query: 539   ctgttatactgctaactgtgtggcgagaggcgattggcaattttgcatgtaatgacgcaa 598
             |||| |||| |||||| ||||| |||||||| |  ||||||||| ||||||||   ||||
Sbjct: 26374 ctgtgatacagctaacagtgtgacgagaggcaaccggcaattttccatgtaattctgcaa 26433

                                                     
Query: 599   gctcactttggcttgcccacatgaccacaaaatcatcgca 638
              ||  |||||| ||||||| |   ||||||||||||||||
Sbjct: 26434 tcttgctttggtttgcccatagagccacaaaatcatcgca 26473



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 73/89 (82%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                         
Query: 104   tcatgtccactatcagattgaccacgacaatccacgaaagaatct---atgggctacaat 160
             |||||||||  ||||||||||||| |||||||  | |||||||||   ||  |||| |  
Sbjct: 25886 tcatgtccatcatcagattgaccaagacaatctcccaaagaatctacgataagctaaatg 25945

                                          
Query: 161   cactactcttccctatcgtttcaagatga 189
             ||||||||||||||||  |||||||||||
Sbjct: 25946 cactactcttccctatattttcaagatga 25974

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>dbj|AK064196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D05, full
           insert sequence
          Length = 1769

 Score =  418 bits (211), Expect = e-114
 Identities = 398/460 (86%), Gaps = 4/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 179 tttcaagatgagcttctgtttgatcataggacagacattaccttgcctggttgacataag 238
           ||||||||||| ||||||| ||||||||    | |||||||||||||||  |||||||||
Sbjct: 736 tttcaagatgaacttctgtctgatcata----aaacattaccttgcctgactgacataag 681

                                                                       
Query: 239 gtctgacgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttat 298
           | ||||| |||||||| ||||||||||| |||||||||||||| | ||| || || ||||
Sbjct: 680 gcctgacaaaagtccttctccaccatacttcaaatgccctctggagattagggcaattat 621

                                                                       
Query: 299 cgcctaatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaag 358
           | ||||| |||||||| ||||| ||||||| |||||| || |||||||| |||||||| |
Sbjct: 620 cccctaacttcaagaatctcccaagccatgccagtaacatggaccgctgatcttccaagg 561

                                                                       
Query: 359 gaagtgtcaggattgtctgcccaatcccttcctcgacaagcttcctatcaaatgaccggc 418
           |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 560 gaagtgtcaggattgtctgcccgatcccttcctcgacgagcttcctatcgaatgaccggc 501

                                                                       
Query: 419 agctgcattgtagccatgagtagtcatcgatgagtgcttgcagccagacttgcaggagaa 478
           |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |
Sbjct: 500 agctgcattgtaaccatgagtagtcatcaatgagtggttgcagccagacttgcaagagga 441

                                                                       
Query: 479 gaagacgagtgtccttggacggaagcatttctcctcttccaatgccaacaaagagccttg 538
           | ||||| |||| |||||| |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 440 ggagacgggtgttcttggatggaagcatctctcctcttccaattccgacaaaaagccttg 381

                                                                       
Query: 539 ctgttatactgctaactgtgtggcgagaggcgattggcaattttgcatgtaatgacgcaa 598
           |||| |||| |||||| ||||| |||||||| |  ||||||||| ||||||||   ||||
Sbjct: 380 ctgtgatacagctaacagtgtgacgagaggcaaccggcaattttccatgtaattctgcaa 321

                                                   
Query: 599 gctcactttggcttgcccacatgaccacaaaatcatcgca 638
            ||  |||||| ||||||| |   ||||||||||||||||
Sbjct: 320 tcttgctttggtttgcccatagagccacaaaatcatcgca 281



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 73/89 (82%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                       
Query: 104 tcatgtccactatcagattgaccacgacaatccacgaaagaatct---atgggctacaat 160
           |||||||||  ||||||||||||| |||||||  | |||||||||   ||  |||| |  
Sbjct: 868 tcatgtccatcatcagattgaccaagacaatctcccaaagaatctacgataagctaaatg 809

                                        
Query: 161 cactactcttccctatcgtttcaagatga 189
           ||||||||||||||||  |||||||||||
Sbjct: 808 cactactcttccctatattttcaagatga 780

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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
              sequence
          Length = 150743

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 125/154 (81%)
 Strand = Plus / Plus

                                                                          
Query: 244    acgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttatcgcct 303
              |||||||||||| ||||||| |||||||| ||| |||||| ||| || ||| |||| || 
Sbjct: 127108 acgaaagtcctcttccaccacacctcaaaggccttctgcagattggggcagctatcccca 127167

                                                                          
Query: 304    aatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagt 363
              |  |||||||| |||||||||||||| || ||||| | | |||| || || |  || |||
Sbjct: 127168 accttcaagaagctcccgagccatgaaagcaatatcgtctgctgatcctcgagcgggagt 127227

                                                
Query: 364    gtcaggattgtctgcccaatcccttcctcgacaa 397
              |||| ||| ||  |||| ||||||||||||||||
Sbjct: 127228 gtcaagatagtacgcccgatcccttcctcgacaa 127261

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                            
Query: 244      acgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttatcgcct 303
                |||||||||||| ||||||| |||||||| ||| |||||| ||| || ||| |||| || 
Sbjct: 31553559 acgaaagtcctcttccaccacacctcaaaggccttctgcagattggggcagctatcccca 31553500

                                                                            
Query: 304      aatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagt 363
                |  |||||||| |||||||||||||| || ||||| | | |||| || || |  || |||
Sbjct: 31553499 accttcaagaagctcccgagccatgaaagcaatatcgtctgctgatcctcgagcgggagt 31553440

                                                  
Query: 364      gtcaggattgtctgcccaatcccttcctcgacaa 397
                |||| ||| ||  |||| ||||||||||||||||
Sbjct: 31553439 gtcaagatagtacgcccgatcccttcctcgacaa 31553406

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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
             sequence
          Length = 133449

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 125/154 (81%)
 Strand = Plus / Plus

                                                                         
Query: 244   acgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttatcgcct 303
             |||||||||||| ||||||| |||||||| ||| |||||| ||| || ||| |||| || 
Sbjct: 39047 acgaaagtcctcttccaccacacctcaaaggccttctgcagattggggcagctatcccca 39106

                                                                         
Query: 304   aatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagt 363
             |  |||||||| |||||||||||||| || ||||| | | |||| || || |  || |||
Sbjct: 39107 accttcaagaagctcccgagccatgaaagcaatatcgtctgctgatcctcgagcgggagt 39166

                                               
Query: 364   gtcaggattgtctgcccaatcccttcctcgacaa 397
             |||| ||| ||  |||| ||||||||||||||||
Sbjct: 39167 gtcaagatagtacgcccgatcccttcctcgacaa 39200

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                            
Query: 244      acgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttatcgcct 303
                |||||||||||| ||||||| |||||||| ||| |||||| ||| || ||| |||| || 
Sbjct: 31644065 acgaaagtcctcttccaccacacctcaaaggccttctgcagattggggcagctatcccca 31644006

                                                                            
Query: 304      aatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagt 363
                |  |||||||| |||||||||||||| || ||||| | | |||| || || |  || |||
Sbjct: 31644005 accttcaagaagctcccgagccatgaaagcaatatcgtctgctgatcctcgagcgggagt 31643946

                                                  
Query: 364      gtcaggattgtctgcccaatcccttcctcgacaa 397
                |||| ||| ||  |||| ||||||||||||||||
Sbjct: 31643945 gtcaagatagtacgcccgatcccttcctcgacaa 31643912

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>dbj|AK068827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162K08, full
            insert sequence
          Length = 2247

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                        
Query: 244  acgaaagtcctcctccaccatacctcaaatgccctctgcaaattcggacagttatcgcct 303
            |||||||||||| ||||||| |||||||| ||| |||||| ||| || ||| |||| || 
Sbjct: 1935 acgaaagtcctcttccaccacacctcaaaggccttctgcagattggggcagctatcccca 1876

                                                                        
Query: 304  aatttcaagaacctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagt 363
            |  |||||||| |||||||||||||| || ||||| | | |||| || || |  || |||
Sbjct: 1875 accttcaagaagctcccgagccatgaaagcaatatcgtctgctgatcctcgagcgggagt 1816

                                              
Query: 364  gtcaggattgtctgcccaatcccttcctcgacaa 397
            |||| ||| ||  |||| ||||||||||||||||
Sbjct: 1815 gtcaagatagtacgcccgatcccttcctcgacaa 1782

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>ref|XM_476441.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 364  gtcaggattgtctgcccaatcccttcctcga 394
            |||||||| |||||||| |||||||||||||
Sbjct: 1409 gtcaggatggtctgccctatcccttcctcga 1379

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 364     gtcaggattgtctgcccaatcccttcctcga 394
               |||||||| |||||||| |||||||||||||
Sbjct: 1213033 gtcaggatggtctgccctatcccttcctcga 1213063

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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 364    gtcaggattgtctgcccaatcccttcctcga 394
              |||||||| |||||||| |||||||||||||
Sbjct: 114640 gtcaggatggtctgccctatcccttcctcga 114670

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>dbj|AP006541.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjB06D23, BM0787,
             complete sequence
          Length = 102734

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 385   ccttcctcgacaagcttcctatcaaatgaccggca 419
             |||||||| ||||| |||| |||||||||||||||
Sbjct: 58545 ccttcctccacaagtttccaatcaaatgaccggca 58579

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>dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18J10, TM0323a,
             complete sequence
          Length = 95559

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 385   ccttcctcgacaagcttcctatcaaatgaccggca 419
             |||||||| ||||| |||| |||||||||||||||
Sbjct: 23660 ccttcctccacaagtttccaatcaaatgaccggca 23694

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>ref|NM_114938.2| Arabidopsis thaliana unknown protein AT3G50780 mRNA, complete cds
          Length = 2009

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  ctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagtgtcaggattgtc 375
            ||||||||||| |||||||| ||   | |||| |||||||| || |||||||| || |||
Sbjct: 1607 ctcccgagccacgacagtaaaatgctctgctgatcttccaatggtagtgtcagtatcgtc 1548

                             
Query: 376  tgcccaatcccttcctc 392
             | ||||| ||||||||
Sbjct: 1547 cgaccaattccttcctc 1531

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>ref|XM_850991.1| PREDICTED: Canis familiaris hypothetical protein LOC606865
            (LOC606865), mRNA
          Length = 1095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 131  caatccacgaaagaatctatgggct 155
            ||||||||||||||| |||||||||
Sbjct: 1011 caatccacgaaagaaactatgggct 1035

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>ref|XM_850650.1| PREDICTED: Canis familiaris similar to HMG-BOX transcription factor
           BBX, transcript variant 4 (LOC478551), mRNA
          Length = 4616

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 131 caatccacgaaagaatctatgggct 155
           ||||||||||||||| |||||||||
Sbjct: 779 caatccacgaaagaaactatgggct 803

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>ref|XM_535728.2| PREDICTED: Canis familiaris similar to HMG-BOX transcription factor
           BBX, transcript variant 1 (LOC478551), mRNA
          Length = 4766

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 131 caatccacgaaagaatctatgggct 155
           ||||||||||||||| |||||||||
Sbjct: 779 caatccacgaaagaaactatgggct 803

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>ref|XM_850554.1| PREDICTED: Canis familiaris similar to HMG-BOX transcription factor
           BBX, transcript variant 2 (LOC478551), mRNA
          Length = 4690

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 131 caatccacgaaagaatctatgggct 155
           ||||||||||||||| |||||||||
Sbjct: 793 caatccacgaaagaaactatgggct 817

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>emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3
          Length = 89469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 316   ctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagtgtcaggattgtc 375
             ||||||||||| |||||||| ||   | |||| |||||||| || |||||||| || |||
Sbjct: 24438 ctcccgagccacgacagtaaaatgctctgctgatcttccaatggtagtgtcagtatcgtc 24497

                              
Query: 376   tgcccaatcccttcctc 392
              | ||||| ||||||||
Sbjct: 24498 cgaccaattccttcctc 24514

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>gb|BT005113.1| Arabidopsis thaliana clone U20469 unknown protein (At3g50780) mRNA,
            complete cds
          Length = 1594

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  ctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagtgtcaggattgtc 375
            ||||||||||| |||||||| ||   | |||| |||||||| || |||||||| || |||
Sbjct: 1424 ctcccgagccacgacagtaaaatgctctgctgatcttccaatggtagtgtcagtatcgtc 1365

                             
Query: 376  tgcccaatcccttcctc 392
             | ||||| ||||||||
Sbjct: 1364 cgaccaattccttcctc 1348

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>gb|BT002970.1| Arabidopsis thaliana clone RAFL15-22-E11 (R20469) unknown protein
            (At3g50780) mRNA, complete cds
          Length = 2036

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 316  ctcccgagccatgacagtaatatagaccgctggtcttccaaaggaagtgtcaggattgtc 375
            ||||||||||| |||||||| ||   | |||| |||||||| || |||||||| || |||
Sbjct: 1618 ctcccgagccacgacagtaaaatgctctgctgatcttccaatggtagtgtcagtatcgtc 1559

                             
Query: 376  tgcccaatcccttcctc 392
             | ||||| ||||||||
Sbjct: 1558 cgaccaattccttcctc 1542

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 442    tcatcgatgagtgcttgcagc 462
              |||||||||||||||||||||
Sbjct: 879307 tcatcgatgagtgcttgcagc 879287

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>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 598   agctcactttggcttgccca 617
             ||||||||||||||||||||
Sbjct: 49933 agctcactttggcttgccca 49952

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>gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromosome 7, complete
              sequence
          Length = 211131

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 184    agatgagcttctgtttgatcataggaca 211
              ||||||| || |||||||||||||||||
Sbjct: 180520 agatgaggttttgtttgatcataggaca 180493

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>ref|XM_871969.1| PREDICTED: Bos taurus similar to HMG-BOX transcription factor BBX,
           transcript variant 3 (LOC533187), mRNA
          Length = 8466

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 caatccacgaaagaatctatgggc 154
           ||||||||||||||| ||||||||
Sbjct: 511 caatccacgaaagaaactatgggc 534

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>ref|XM_612509.2| PREDICTED: Bos taurus similar to HMG-BOX transcription factor BBX,
           transcript variant 1 (LOC533187), mRNA
          Length = 8616

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 caatccacgaaagaatctatgggc 154
           ||||||||||||||| ||||||||
Sbjct: 511 caatccacgaaagaaactatgggc 534

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>ref|XM_871772.1| PREDICTED: Bos taurus similar to HMG-BOX transcription factor BBX,
           transcript variant 2 (LOC533187), mRNA
          Length = 8526

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 caatccacgaaagaatctatgggc 154
           ||||||||||||||| ||||||||
Sbjct: 511 caatccacgaaagaaactatgggc 534

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>gb|AC002480.1| Homo sapiens BAC clone GS1-55K18 from 7, complete sequence
          Length = 200167

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 184   agatgagcttctgtttgatcataggaca 211
             ||||||| || |||||||||||||||||
Sbjct: 39043 agatgaggttttgtttgatcataggaca 39070

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>gb|AC142337.1| Pan troglodytes BAC clone RP43-39F23 from 7, complete sequence
          Length = 157646

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 184   agatgagcttctgtttgatcataggaca 211
             ||||||| || |||||||||||||||||
Sbjct: 62900 agatgaggttttgtttgatcataggaca 62873

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>ref|XM_499959.1| Yarrowia lipolytica CLIB122, YALI0A10791g predicted mRNA
          Length = 1857

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 acgaaagtcctcctccacca 263
           ||||||||||||||||||||
Sbjct: 144 acgaaagtcctcctccacca 163

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>gb|AE008911.1| Salmonella typhimurium LT2, section 215 of 220 of the complete genome
          Length = 20615

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    catcataggctaaacgtgca 30
             ||||||||||||||||||||
Sbjct: 20361 catcataggctaaacgtgca 20380

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 456     ttgcagccagacttgcagga 475
               ||||||||||||||||||||
Sbjct: 3428933 ttgcagccagacttgcagga 3428914

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    cccaatcccttcctcgacaa 397
              ||||||||||||||||||||
Sbjct: 839963 cccaatcccttcctcgacaa 839944

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>emb|BX294186.9| Zebrafish DNA sequence from clone DKEY-170O10 in linkage group 5,
              complete sequence
          Length = 143396

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     acatttacgcagtaaggaaa 75
              ||||||||||||||||||||
Sbjct: 101541 acatttacgcagtaaggaaa 101522

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>gb|AC161278.2| Pan troglodytes BAC clone CH251-486B7 from chromosome 7, complete
              sequence
          Length = 211383

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 184    agatgagcttctgtttgatcataggaca 211
              ||||||| || |||||||||||||||||
Sbjct: 193980 agatgaggttttgtttgatcataggaca 194007

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>emb|CT863710.2| Medicago truncatula chromosome 5 clone mth2-52h19, COMPLETE SEQUENCE
          Length = 118754

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tcctcctccaccatacctca 270
             ||||||||||||||||||||
Sbjct: 49041 tcctcctccaccatacctca 49022

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>emb|CR388007.7| Zebrafish DNA sequence from clone DKEY-22G9 in linkage group 6, complete
              sequence
          Length = 221983

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    agccttgctgttatactgct 551
              ||||||||||||||||||||
Sbjct: 148227 agccttgctgttatactgct 148246

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>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 472 aggagaagaagacgagtgtc 491
           ||||||||||||||||||||
Sbjct: 63  aggagaagaagacgagtgtc 82

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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      catcataggctaaacgtgca 30
               ||||||||||||||||||||
Sbjct: 4664702 catcataggctaaacgtgca 4664721

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>gb|BC099167.1| Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide
           D, mRNA (cDNA clone MGC:116334 IMAGE:7382125), complete
           cds
          Length = 1921

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 339 agaccgctggtcttccaaaggaagtgtc 366
           ||||| |||||||||||||||| |||||
Sbjct: 769 agacccctggtcttccaaaggacgtgtc 796

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>emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in linkage group 25,
              complete sequence
          Length = 182666

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    cggcagctgcattgtagcca 434
              ||||||||||||||||||||
Sbjct: 178137 cggcagctgcattgtagcca 178118

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>ref|NM_001031653.1| Rattus norvegicus polymerase (RNA) III (DNA directed) polypeptide D
           (Polr3d), mRNA
          Length = 1921

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 339 agaccgctggtcttccaaaggaagtgtc 366
           ||||| |||||||||||||||| |||||
Sbjct: 769 agacccctggtcttccaaaggacgtgtc 796

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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 244     acgaaagtcctcctccacca 263
               ||||||||||||||||||||
Sbjct: 1129294 acgaaagtcctcctccacca 1129275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,895,828
Number of Sequences: 3902068
Number of extensions: 4895828
Number of successful extensions: 80874
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 80575
Number of HSP's gapped (non-prelim): 292
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result