ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26k14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506584.1| PREDICTED Oryza sativa (japonica cultivar-group... 315 9e-83
2ref|NM_185508.2| Oryza sativa (japonica cultivar-group), mRNA 315 9e-83
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 315 9e-83
4dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic D... 315 9e-83
5dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 315 9e-83
6dbj|AK106965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 9e-83
7dbj|AK069836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 9e-83
8gb|AC154547.3| Mus musculus BAC clone RP23-433L1 from chromosome... 44 0.50
9gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence 42 2.0
10gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete ... 42 2.0
11gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence 42 2.0
12gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
13dbj|AK125156.1| Homo sapiens cDNA FLJ43166 fis, clone FCBBF30033... 42 2.0
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
16gb|U63721.1|HSU63721 Human elastin (ELN) gene, partial cds, and ... 42 2.0
17gb|AC154186.1| Mus musculus BAC clone RP24-435B3 from chromosome... 42 2.0
18dbj|AK102354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
21emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.0
22gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced... 42 2.0
23gb|AC121942.2| Mus musculus chromosome 13 clone RP24-211D12, com... 40 7.7
24gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, com... 40 7.7
25gb|AC166813.4| Mus musculus chromosome 3, clone RP23-404H11, com... 40 7.7
26gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome... 40 7.7
27gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete... 40 7.7
28gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, co... 40 7.7
29gb|AC156827.4| Medicago truncatula clone mth2-15c17, complete se... 40 7.7
30gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.7
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.7
32emb|AL353619.9| Human DNA sequence from clone RP11-563G12 on chr... 40 7.7
33gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, compl... 40 7.7
34gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, compl... 40 7.7
35gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome... 40 7.7
36emb|CR751234.13| Zebrafish DNA sequence from clone DKEY-164M14 i... 40 7.7
37gb|AC021583.11| Homo sapiens chromosome 9, clone RP11-1026H23, c... 40 7.7
38emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chro... 40 7.7
39emb|AJ537596.1|UNK537596 Uncultured bacterium cel gene for cellu... 40 7.7
40gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence 40 7.7
41gb|AC021582.13| Homo sapiens chromosome 9, clone RP11-687K5, com... 40 7.7
42gb|AC104807.5| Homo sapiens BAC clone RP11-616I24 from 2, comple... 40 7.7
43gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, compl... 40 7.7
44gb|AC013275.8| Homo sapiens BAC clone RP11-464C8 from 2, complet... 40 7.7
45gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, comple... 40 7.7
46gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20... 40 7.7
47gb|AF111169.2|AF111169 Homo sapiens chromosome 14 BAC containing... 40 7.7 
>ref|XM_506584.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1165_F02.106 mRNA
          Length = 1960

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                        
Query: 167  aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
            ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 1227 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 1168

                                                                        
Query: 227  ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
              ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 1167 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 1108

                                                                        
Query: 287  gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
             || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 1107 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 1048

                                                                        
Query: 347  gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
            ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1047 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 988

                                                                        
Query: 407  aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
             ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 987  gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 928

                                                                        
Query: 467  ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
             ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 927  ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 868

                                                       
Query: 527  aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
            |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 867  aactccaccattaaacatcacaaaccgccggtcaacgccaacc 825
to top
>ref|NM_185508.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1689

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                        
Query: 167  aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
            ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 1362 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 1303

                                                                        
Query: 227  ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
              ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 1302 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 1243

                                                                        
Query: 287  gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
             || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 1242 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 1183

                                                                        
Query: 347  gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
            ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1182 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 1123

                                                                        
Query: 407  aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
             ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 1122 gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 1063

                                                                        
Query: 467  ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
             ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 1062 ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 1003

                                                       
Query: 527  aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
            |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 1002 aactccaccattaaacatcacaaaccgccggtcaacgccaacc 960
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                            
Query: 167      aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
                ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 29173759 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 29173700

                                                                            
Query: 227      ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
                  ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 29173699 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 29173640

                                                                            
Query: 287      gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
                 || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 29173639 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 29173580

                                                                            
Query: 347      gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
                ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 29173579 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 29173520

                                                                            
Query: 407      aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
                 ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 29173519 gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 29173460

                                                                            
Query: 467      ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
                 ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 29173459 ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 29173400

                                                           
Query: 527      aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
                |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 29173399 aactccaccattaaacatcacaaaccgccggtcaacgccaacc 29173357
to top
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1165_F02
          Length = 125993

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                         
Query: 167   aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
             ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 13833 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 13774

                                                                         
Query: 227   ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
               ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 13773 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 13714

                                                                         
Query: 287   gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
              || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 13713 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 13654

                                                                         
Query: 347   gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
             ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 13653 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 13594

                                                                         
Query: 407   aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
              ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 13593 gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 13534

                                                                         
Query: 467   ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
              ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 13533 ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 13474

                                                        
Query: 527   aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
             |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 13473 aactccaccattaaacatcacaaaccgccggtcaacgccaacc 13431
to top
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1150_E04
          Length = 130973

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                          
Query: 167    aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
              ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 108877 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 108818

                                                                          
Query: 227    ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
                ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 108817 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 108758

                                                                          
Query: 287    gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
               || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 108757 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 108698

                                                                          
Query: 347    gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
              ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 108697 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 108638

                                                                          
Query: 407    aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
               ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 108637 gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 108578

                                                                          
Query: 467    ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
               ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 108577 ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 108518

                                                         
Query: 527    aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
              |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 108517 aactccaccattaaacatcacaaaccgccggtcaacgccaacc 108475
to top
>dbj|AK106965.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F10, full
            insert sequence
          Length = 1960

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                        
Query: 167  aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
            ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 1227 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 1168

                                                                        
Query: 227  ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
              ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 1167 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 1108

                                                                        
Query: 287  gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
             || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 1107 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 1048

                                                                        
Query: 347  gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
            ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1047 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 988

                                                                        
Query: 407  aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
             ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 987  gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 928

                                                                        
Query: 467  ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
             ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 927  ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 868

                                                       
Query: 527  aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
            |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 867  aactccaccattaaacatcacaaaccgccggtcaacgccaacc 825
to top
>dbj|AK069836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031I12, full
            insert sequence
          Length = 1688

 Score =  315 bits (159), Expect = 9e-83
 Identities = 342/403 (84%)
 Strand = Plus / Minus

                                                                        
Query: 167  aaaacacatttcagtatcagccattccatcagagcctacaagcaacagcttgtcaggata 226
            ||||||||| |||||||||||||||  |||||| || |||||||||| |||||| |||||
Sbjct: 1361 aaaacacatctcagtatcagccattttatcagaacccacaagcaacaacttgtctggata 1302

                                                                        
Query: 227  ggcttcgatatgcccgaatgcactggtgccaggaggacactcaagcgcggcctcgagcgt 286
              ||||||| |||||||||||||| || |||||||||||||| |  || ||||| || ||
Sbjct: 1301 cacttcgatgtgcccgaatgcactagtaccaggaggacactccaatgcagcctcaagagt 1242

                                                                        
Query: 287  gcgatggtgcacgccatgggagtccactgagtagccacccttgtggtcatgcccggcaaa 346
             || || || |||||||| |||||||| ||||  || ||||||||||| |||||||||||
Sbjct: 1241 ccggtgatgtacgccatgcgagtccacagagtgacctcccttgtggtcgtgcccggcaaa 1182

                                                                        
Query: 347  gcaggccctaacacagttgtaccgtcgaacaatagccatcacctcatcatagttccacat 406
            ||| ||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1181 gcatgccttaacacatttgtactggcgaacaatagccatcacctcatcgtagttccacat 1122

                                                                        
Query: 407  aagagctgctgggtacactgcgccagggtccatcgggagatgactgcataggacgacatt 466
             ||||||||     |  ||| |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 1121 gagagctgcaaaagaagctgagccaggatccattgggagatgactgcataggatgacatt 1062

                                                                        
Query: 467  ctgccggcggtccgatgcatcctggaggacatcattgagccaggacagctgctccttgcc 526
             ||||||||  | ||||||||||||||||||||||||||||| |||| |||||| || ||
Sbjct: 1061 ttgccggcgtgctgatgcatcctggaggacatcattgagccatgacaactgctctttacc 1002

                                                       
Query: 527  aaccgcaccattgaacttcacaaaccgcctgtcgacgtcaacc 569
            |||  ||||||| ||| |||||||||||| ||| ||| |||||
Sbjct: 1001 aactccaccattaaacatcacaaaccgccggtcaacgccaacc 959
to top
>gb|AC154547.3| Mus musculus BAC clone RP23-433L1 from chromosome 13, complete sequence
          Length = 211599

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 477    tccgatgcatcctggaggacat 498
              ||||||||||||||||||||||
Sbjct: 132747 tccgatgcatcctggaggacat 132726
to top
>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence
          Length = 161716

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   agccatcacctcatcatagtt 400
             |||||||||||||||||||||
Sbjct: 38823 agccatcacctcatcatagtt 38843
to top
>gb|AC005057.2| Homo sapiens BAC clone CTB-52H6 from 7, complete sequence
          Length = 99370

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   agccatcacctcatcatagtt 400
             |||||||||||||||||||||
Sbjct: 75885 agccatcacctcatcatagtt 75865
to top
>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence
          Length = 167732

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   agccatcacctcatcatagtt 400
             |||||||||||||||||||||
Sbjct: 89808 agccatcacctcatcatagtt 89828
to top
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06,
              complete sequence
          Length = 135774

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     tttaatgttatttacatgtaa 51
              |||||||||||||||||||||
Sbjct: 125003 tttaatgttatttacatgtaa 125023
to top
>dbj|AK125156.1| Homo sapiens cDNA FLJ43166 fis, clone FCBBF3003373, moderately
            similar to LIM DOMAIN KINASE 1 (EC 2.7.1.-)
          Length = 3394

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 380  agccatcacctcatcatagtt 400
            |||||||||||||||||||||
Sbjct: 2269 agccatcacctcatcatagtt 2289
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 265      actcaagcgcggcctcgagcgtgcg 289
                |||| ||||||||||||||||||||
Sbjct: 22662916 actcgagcgcggcctcgagcgtgcg 22662892
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 31       tttaatgttatttacatgtaa 51
                |||||||||||||||||||||
Sbjct: 11671068 tttaatgttatttacatgtaa 11671088
to top
>gb|U63721.1|HSU63721 Human elastin (ELN) gene, partial cds, and LIM-kinase (LIMK1) gene,
             complete cds
          Length = 67046

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   agccatcacctcatcatagtt 400
             |||||||||||||||||||||
Sbjct: 57282 agccatcacctcatcatagtt 57302
to top
>gb|AC154186.1| Mus musculus BAC clone RP24-435B3 from chromosome 14, complete sequence
          Length = 167900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     caatagcatcaccaagagtca 112
              |||||||||||||||||||||
Sbjct: 146486 caatagcatcaccaagagtca 146466
to top
>dbj|AK102354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091G14, full
           insert sequence
          Length = 2087

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 265 actcaagcgcggcctcgagcgtgcg 289
           |||| ||||||||||||||||||||
Sbjct: 258 actcgagcgcggcctcgagcgtgcg 234
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 31       tttaatgttatttacatgtaa 51
                |||||||||||||||||||||
Sbjct: 11677508 tttaatgttatttacatgtaa 11677528
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 265      actcaagcgcggcctcgagcgtgcg 289
                |||| ||||||||||||||||||||
Sbjct: 22591107 actcgagcgcggcctcgagcgtgcg 22591083
to top
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138368

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 265    actcaagcgcggcctcgagcgtgcg 289
              |||| ||||||||||||||||||||
Sbjct: 108036 actcgagcgcggcctcgagcgtgcg 108012
to top
>gb|U62293.1|HSU62293 Human LIM-kinase1 and alternatively spliced LIM-kinase1 (LIMK1) gene,
             complete cds
          Length = 65608

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 380   agccatcacctcatcatagtt 400
             |||||||||||||||||||||
Sbjct: 33647 agccatcacctcatcatagtt 33667
to top
>gb|AC121942.2| Mus musculus chromosome 13 clone RP24-211D12, complete sequence
          Length = 164932

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tgtcagacaacaggaagtca 77
             ||||||||||||||||||||
Sbjct: 85431 tgtcagacaacaggaagtca 85412
to top
>gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, complete sequence
          Length = 162227

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     ttttaatgttatttacatgt 49
              ||||||||||||||||||||
Sbjct: 104704 ttttaatgttatttacatgt 104685
to top
>gb|AC166813.4| Mus musculus chromosome 3, clone RP23-404H11, complete sequence
          Length = 193254

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     ttttaatgttatttacatgt 49
              ||||||||||||||||||||
Sbjct: 156060 ttttaatgttatttacatgt 156079
to top
>gb|AC183918.1| Homo sapiens BAC clone RP11-170N9 from chromosome unknown, complete
              sequence
          Length = 151064

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ccaggaggacactcaagcgc 274
              ||||||||||||||||||||
Sbjct: 146921 ccaggaggacactcaagcgc 146902
to top
>gb|AC140113.3| Homo sapiens PAC clone RP1-85D24 from Y, complete sequence
          Length = 155655

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ccaggaggacactcaagcgc 274
              ||||||||||||||||||||
Sbjct: 102522 ccaggaggacactcaagcgc 102503
to top
>gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, complete sequence
          Length = 170072

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    tgagtagccacccttgtggt 333
              ||||||||||||||||||||
Sbjct: 125234 tgagtagccacccttgtggt 125253
to top
>gb|AC156827.4| Medicago truncatula clone mth2-15c17, complete sequence
          Length = 110578

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aacagttccttgttattttt 25
             ||||||||||||||||||||
Sbjct: 96059 aacagttccttgttattttt 96078
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     agcgcggcctcgagcgtgcg 289
               ||||||||||||||||||||
Sbjct: 4797409 agcgcggcctcgagcgtgcg 4797428
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 457     ggacgacattctgccggcgg 476
               ||||||||||||||||||||
Sbjct: 2332201 ggacgacattctgccggcgg 2332220
to top
>emb|AL353619.9| Human DNA sequence from clone RP11-563G12 on chromosome 9q21.33-22.33
             Contains the 5' end of a novel gene and the DIRAS2 gene
             for DIRAS family GTP-binding RAS-like 2, complete sequence
          Length = 143299

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cttttaatgttatttacatg 48
             ||||||||||||||||||||
Sbjct: 32606 cttttaatgttatttacatg 32625
to top
>gb|AC145212.1| Homo sapiens BAC clone RP11-1368F8 from UL, complete sequence
          Length = 191469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ccaggaggacactcaagcgc 274
             ||||||||||||||||||||
Sbjct: 16572 ccaggaggacactcaagcgc 16591
to top
>gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, complete sequence
          Length = 176593

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   gcactggtgccaggaggaca 265
             ||||||||||||||||||||
Sbjct: 98298 gcactggtgccaggaggaca 98279
to top
>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence
          Length = 224641

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    agacaacaggaagtcacatg 81
             ||||||||||||||||||||
Sbjct: 82812 agacaacaggaagtcacatg 82793
to top
>emb|CR751234.13| Zebrafish DNA sequence from clone DKEY-164M14 in linkage group 20
              Contains the gene for a novel protein similar to vertebrate
              bromodomain containing 1 (BRD1), the gene for a novel
              protein similar to vertebrate asparagine-linked
              glycosylation 12 homolog (yeast,
              alpha-1,6-mannosyltransferase) (ALG12), the gene for a
              novel protein similar to vertebrate solute carrier family 6
              (neurotransmitter transporter, GABA), member 1 (SLC6A1),
              the gene for a novel protein similar to vertebrate zinc
              finger, BED domain containing 4 (ZBED4), the gene for a
              novel protein similar to vertebrate cysteine-rich with
              EGF-like domains 1 (CRELD1) (zgc:66383) and three CpG
              islands, complete sequence
          Length = 218596

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     cttttaatgttatttacatg 48
              ||||||||||||||||||||
Sbjct: 197142 cttttaatgttatttacatg 197123
to top
>gb|AC021583.11| Homo sapiens chromosome 9, clone RP11-1026H23, complete sequence
          Length = 143857

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cttttaatgttatttacatg 48
             ||||||||||||||||||||
Sbjct: 76230 cttttaatgttatttacatg 76249
to top
>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete
              sequence
          Length = 158069

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ccaggaggacactcaagcgc 274
              ||||||||||||||||||||
Sbjct: 112113 ccaggaggacactcaagcgc 112094
to top
>emb|AJ537596.1|UNK537596 Uncultured bacterium cel gene for cellulase, from Lake Nakuru
          Length = 3796

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  gccatcacctcatcatagtt 400
            ||||||||||||||||||||
Sbjct: 1389 gccatcacctcatcatagtt 1370
to top
>gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence
          Length = 214480

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ccaggaggacactcaagcgc 274
              ||||||||||||||||||||
Sbjct: 202376 ccaggaggacactcaagcgc 202357
to top
>gb|AC021582.13| Homo sapiens chromosome 9, clone RP11-687K5, complete sequence
          Length = 199612

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   cttttaatgttatttacatg 48
            ||||||||||||||||||||
Sbjct: 8697 cttttaatgttatttacatg 8716
to top
>gb|AC104807.5| Homo sapiens BAC clone RP11-616I24 from 2, complete sequence
          Length = 64232

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttttaatgttatttacatgt 49
             ||||||||||||||||||||
Sbjct: 40594 ttttaatgttatttacatgt 40613
to top
>gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, complete sequence
          Length = 151367

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    aatagcatcaccaagagtca 112
             ||||||||||||||||||||
Sbjct: 38052 aatagcatcaccaagagtca 38033
to top
>gb|AC013275.8| Homo sapiens BAC clone RP11-464C8 from 2, complete sequence
          Length = 174822

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   ccatgggagtccactgagtagcca 323
             |||||||||||||||||| |||||
Sbjct: 10490 ccatgggagtccactgagcagcca 10513
to top
>gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, complete sequence
          Length = 122880

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 194  atcagagcctacaagcaacagctt 217
            ||||||||||||||||||| ||||
Sbjct: 5650 atcagagcctacaagcaactgctt 5673
to top
>gb|AC148028.2| Homo sapiens chromosome UNKNOWN clone RP11-238G20, complete sequence
          Length = 172857

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ccaggaggacactcaagcgc 274
             ||||||||||||||||||||
Sbjct: 11811 ccaggaggacactcaagcgc 11830
to top
>gb|AF111169.2|AF111169 Homo sapiens chromosome 14 BAC containing gene for KIAA0759 and other
             possible new transcripts, complete sequence
          Length = 183916

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aggaagtcacatgagttttc 88
             ||||||||||||||||||||
Sbjct: 36090 aggaagtcacatgagttttc 36109


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,260,554
Number of Sequences: 3902068
Number of extensions: 4260554
Number of successful extensions: 83463
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83235
Number of HSP's gapped (non-prelim): 221
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top