ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191469.1| Oryza sativa (japonica cultivar-group), predic... 145 2e-31
2gb|BT016410.1| Zea mays clone Contig243 mRNA sequence 121 2e-24
3gb|AY104436.1| Zea mays PCO129536 mRNA sequence 121 2e-24
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
5dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
6gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 46 0.11
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.42
8emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
9gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, comple... 42 1.7
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
11emb|CT025698.13| Mouse DNA sequence from clone RP24-223P14 on ch... 42 1.7
12gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, co... 40 6.6
13emb|AL513479.12| Human DNA sequence from clone RP11-329N22 on ch... 40 6.6
14gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell ... 40 6.6
15gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell... 40 6.6
16gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, comple... 40 6.6
17gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complet... 40 6.6
18emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, co... 40 6.6
19gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, com... 40 6.6
20gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 ... 40 6.6 
>ref|NM_191469.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 453

 Score =  145 bits (73), Expect = 2e-31
 Identities = 100/109 (91%)
 Strand = Plus / Minus

                                                                       
Query: 378 ttcatggaatgtaattcccggccaaatggttccaagaacttcatctctatatctaggggc 437
           ||||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 434 ttcatggaatgtagttcccgtccaaatggctccaggaacttcatctctatatcaaggggc 375

                                                            
Query: 438 caaaccttgagtcccatcagccgcagaggcgcctgctggccgggcacga 486
           ||||||||||| |||| ||||||||| ||||||||||| ||||||||||
Sbjct: 374 caaaccttgaggcccagcagccgcagcggcgcctgctgcccgggcacga 326
to top
>gb|BT016410.1| Zea mays clone Contig243 mRNA sequence
          Length = 1015

 Score =  121 bits (61), Expect = 2e-24
 Identities = 127/149 (85%)
 Strand = Plus / Minus

                                                                       
Query: 338 agatgagtccatgacgctgcatgatttgtccataaacttcttcatggaatgtaattcccg 397
           |||||||||||| || ||||| ||||||||||| || || ||||| ||||||| ||||||
Sbjct: 538 agatgagtccataacactgcacgatttgtccatgaattttttcattgaatgtagttcccg 479

                                                                       
Query: 398 gccaaatggttccaagaacttcatctctatatctaggggccaaaccttgagtcccatcag 457
            |||||||| || | ||||||||| |||||||| | |||||| |||||||| ||||| ||
Sbjct: 478 tccaaatggctctaggaacttcatatctatatcaacgggccagaccttgagccccataag 419

                                        
Query: 458 ccgcagaggcgcctgctggccgggcacga 486
           ||  |||||||| ||||| ||||||||||
Sbjct: 418 ccttagaggcgcttgctgtccgggcacga 390
to top
>gb|AY104436.1| Zea mays PCO129536 mRNA sequence
          Length = 952

 Score =  121 bits (61), Expect = 2e-24
 Identities = 127/149 (85%)
 Strand = Plus / Minus

                                                                       
Query: 338 agatgagtccatgacgctgcatgatttgtccataaacttcttcatggaatgtaattcccg 397
           |||||||||||| || ||||| ||||||||||| || || ||||| ||||||| ||||||
Sbjct: 537 agatgagtccataacactgcacgatttgtccatgaattttttcattgaatgtagttcccg 478

                                                                       
Query: 398 gccaaatggttccaagaacttcatctctatatctaggggccaaaccttgagtcccatcag 457
            |||||||| || | ||||||||| |||||||| | |||||| |||||||| ||||| ||
Sbjct: 477 tccaaatggctctaggaacttcatatctatatcaacgggccagaccttgagccccataag 418

                                        
Query: 458 ccgcagaggcgcctgctggccgggcacga 486
           ||  |||||||| ||||| ||||||||||
Sbjct: 417 ccttagaggcgcttgctgtccgggcacga 389
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 378      ttcatggaatgtaattcccggccaaatggttccaagaacttcatctctatatctaggggc 437
                ||||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 32849792 ttcatggaatgtagttcccgtccaaatggctccaggaacttcatctctatatcaaggggc 32849851

                       
Query: 438      caaacct 444
                |||||||
Sbjct: 32849852 caaacct 32849858



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 441      accttgagtcccatcagccgcagaggcgcctgctggccgggcacga 486
                |||||||| |||| ||||||||| ||||||||||| ||||||||||
Sbjct: 32850815 accttgaggcccagcagccgcagcggcgcctgctgcccgggcacga 32850860



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 338      agatgagtccatgacgctgcatgatttgtccataaact 375
                |||||||||||| ||||||||||| |||||||| ||||
Sbjct: 32849005 agatgagtccataacgctgcatgacttgtccatgaact 32849042



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 139      atatctcgttccatcaagtgatgc 162
                |||||| |||||||||||||||||
Sbjct: 32848833 atatcttgttccatcaagtgatgc 32848856
to top
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 378   ttcatggaatgtaattcccggccaaatggttccaagaacttcatctctatatctaggggc 437
             ||||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 71197 ttcatggaatgtagttcccgtccaaatggctccaggaacttcatctctatatcaaggggc 71256

                    
Query: 438   caaacct 444
             |||||||
Sbjct: 71257 caaacct 71263



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 441   accttgagtcccatcagccgcagaggcgcctgctggccgggcacga 486
             |||||||| |||| ||||||||| ||||||||||| ||||||||||
Sbjct: 72220 accttgaggcccagcagccgcagcggcgcctgctgcccgggcacga 72265



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 338   agatgagtccatgacgctgcatgatttgtccataaact 375
             |||||||||||| ||||||||||| |||||||| ||||
Sbjct: 70410 agatgagtccataacgctgcatgacttgtccatgaact 70447



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   atatctcgttccatcaagtgatgc 162
             |||||| |||||||||||||||||
Sbjct: 70238 atatcttgttccatcaagtgatgc 70261
to top
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 48      aaaacaatttatctcggcgcaaa 70
               |||||||||||||||||||||||
Sbjct: 1082332 aaaacaatttatctcggcgcaaa 1082354
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 453     atcagccgcagaggcgcctgctggccgggc 482
               ||||||||||| ||||||| ||||||||||
Sbjct: 1515966 atcagccgcagcggcgccttctggccgggc 1515937
to top
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
              complete sequence
          Length = 175163

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     atataacaaatgtattacatg 44
              |||||||||||||||||||||
Sbjct: 110064 atataacaaatgtattacatg 110084
to top
>gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, complete sequence
          Length = 206136

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    aaatgtattacatgttgaaaa 51
             |||||||||||||||||||||
Sbjct: 23622 aaatgtattacatgttgaaaa 23602
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 24       atataacaaatgtattacatg 44
                |||||||||||||||||||||
Sbjct: 28461389 atataacaaatgtattacatg 28461409
to top
>emb|CT025698.13| Mouse DNA sequence from clone RP24-223P14 on chromosome 9, complete
             sequence
          Length = 193973

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 238   cttcatcaggcactgtgggtg 258
             |||||||||||||||||||||
Sbjct: 79914 cttcatcaggcactgtgggtg 79934
to top
>gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, complete sequence
          Length = 186636

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    attacttgctaatccttgct 124
              ||||||||||||||||||||
Sbjct: 102075 attacttgctaatccttgct 102094
to top
>emb|AL513479.12| Human DNA sequence from clone RP11-329N22 on chromosome 1, complete
             sequence
          Length = 193826

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tataacaaatgtattacatg 44
             ||||||||||||||||||||
Sbjct: 71036 tataacaaatgtattacatg 71017
to top
>gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179205

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    tgcggccttgtagcttcatcaggc 248
              |||||| |||||||||||||||||
Sbjct: 148911 tgcggcgttgtagcttcatcaggc 148934
to top
>gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 167366

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 225  tgcggccttgtagcttcatcaggc 248
            |||||| |||||||||||||||||
Sbjct: 6268 tgcggcgttgtagcttcatcaggc 6291
to top
>gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, complete sequence
          Length = 70709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    aaatgtattacatgttgaaa 50
             ||||||||||||||||||||
Sbjct: 63131 aaatgtattacatgttgaaa 63112
to top
>gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complete sequence
          Length = 182019

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 382   tggaatgtaattcccggccaaatg 405
             |||||||||||||| |||||||||
Sbjct: 60409 tggaatgtaattccaggccaaatg 60386
to top
>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence
          Length = 229574

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   tgttgaaaacaatttatctc 62
            ||||||||||||||||||||
Sbjct: 8985 tgttgaaaacaatttatctc 8966
to top
>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence
          Length = 175751

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    aaatgtattacatgttgaaa 50
             ||||||||||||||||||||
Sbjct: 55484 aaatgtattacatgttgaaa 55465
to top
>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete
              sequence
          Length = 290042

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 225    tgcggccttgtagcttcatcaggc 248
              |||||| |||||||||||||||||
Sbjct: 280321 tgcggcgttgtagcttcatcaggc 280298


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,845,234
Number of Sequences: 3902068
Number of extensions: 3845234
Number of successful extensions: 69208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69109
Number of HSP's gapped (non-prelim): 99
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top