ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags26k07 |
|---|---|
| Clone Library Name | barley_pub |
>TFB4_SCHPO (O74366) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 297 Score = 57.4 bits (137), Expect = 2e-08 Identities = 22/35 (62%), Positives = 29/35 (82%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFS 400 FCHKK +D+G+VCSVCLSIFC+ CSTC ++F+ Sbjct: 253 FCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKFT 287
>TF2H3_MOUSE (Q8VD76) TFIIH basal transcription factor complex p34 subunit| (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) Length = 309 Score = 56.6 bits (135), Expect = 4e-08 Identities = 23/50 (46%), Positives = 35/50 (70%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVSMPDLNSLPDQRQ 355 FCH+ I++GYVCSVCLSIFC + C+TC + F ++S+P + ++Q Sbjct: 257 FCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF-KISLPPVLKAKKKKQ 305
>TF2H3_HUMAN (Q13889) TFIIH basal transcription factor complex p34 subunit| (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) Length = 308 Score = 55.8 bits (133), Expect = 6e-08 Identities = 22/40 (55%), Positives = 31/40 (77%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVSMP 385 FCH+ I++GYVCSVCLSIFC + C+TC + F ++S+P Sbjct: 256 FCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF-KISLP 294
>TFB4_YARLI (Q6CD24) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 340 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKY--HKKCSTCGSEFSRVSMPDLNSLP 367 F K+ +D+GYVCSVCL I + +++C TC + +S ++ L P Sbjct: 282 FLTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYSEKTLAGLGRKP 329
>TFB4_DEBHA (Q6BL86) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 387 Score = 38.9 bits (89), Expect = 0.008 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKYHK--KCSTCGSEFSRVSMPDL 379 F K++++G+VCSVCL I K KC TCGS+F + L Sbjct: 315 FITGKSVNLGFVCSVCLCIMSIIPKEGKCPTCGSKFDEKILAQL 358
>TFB4_ASHGO (Q75B93) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 341 Score = 32.3 bits (72), Expect = 0.74 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -2 Query: 492 KTIDMGYVCSVCLSI--FCKYHKKCSTCGSEFSRVSMPDLNSLP 367 K + +G+VCSVCL + KC C SEF + L+ P Sbjct: 282 KVVAIGFVCSVCLCVLSIIPPGNKCPACDSEFDEKVVAKLSRKP 325
>TFB4_CANGA (Q6FWA7) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 335 Score = 32.0 bits (71), Expect = 0.97 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 492 KTIDMGYVCSVCLSI--FCKYHKKCSTCGSEFSRVSMPDLNSLP 367 K + +GY+CSVCL + KC C S+F + L P Sbjct: 278 KVVAIGYICSVCLCVLSIIPPGNKCPACDSQFDERVIAKLKKKP 321
>YNC3_YEAST (P53971) RING finger protein YNL023C| Length = 965 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -2 Query: 501 CHKKTIDMGYVCSVCLSIFCKYH--KKCSTCGSEFSRVSMPDLNSL 370 CH KT C+ + I+CK KK TCG++ RVS+ + + L Sbjct: 623 CHGKTECPDLPCATLVKIYCKCGRIKKSVTCGAKSDRVSVTESSVL 668
>THB2_RAT (P37826) Thyroid hormone receptor beta-2| Length = 514 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R L+ YS E CI Sbjct: 154 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPS------YSCKYE-GKCII 206 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 207 DKVTRNQCQECRFKKCIYVGMATDLV 232
>THB2_HUMAN (P37243) Thyroid hormone receptor beta-2| Length = 476 Score = 30.8 bits (68), Expect = 2.2 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R +L+ YS E C+ Sbjct: 116 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPS------YSCKYE-GKCVI 168 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 169 DKVTRNQCQECRFKKCIYVGMATDLV 194
>THB1_RAT (P18113) Thyroid hormone receptor beta-1| Length = 461 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R L+ YS E CI Sbjct: 101 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPS------YSCKYE-GKCII 153 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 154 DKVTRNQCQECRFKKCIYVGMATDLV 179
>THB1_MOUSE (P37242) Thyroid hormone receptor beta-1| Length = 461 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R L+ YS E CI Sbjct: 101 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPS------YSCKYE-GKCII 153 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 154 DKVTRNQCQECRFKKCIYVGMATDLV 179
>THB1_HUMAN (P10828) Thyroid hormone receptor beta-1| Length = 461 Score = 30.8 bits (68), Expect = 2.2 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R +L+ YS E C+ Sbjct: 101 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPS------YSCKYE-GKCVI 153 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 154 DKVTRNQCQECRFKKCIYVGMATDLV 179
>THB2_MOUSE (P37244) Thyroid hormone receptor beta-2| Length = 475 Score = 30.8 bits (68), Expect = 2.2 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R L+ YS E CI Sbjct: 115 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPS------YSCKYE-GKCII 167 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 168 DKVTRNQCQECRFKKCIYVGMATDLV 193
>THB1_SHEEP (Q28571) Thyroid hormone receptor beta-1 (Fragment)| Length = 411 Score = 30.8 bits (68), Expect = 2.2 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R +L+ YS E C+ Sbjct: 99 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPS------YSCKYE-GKCVI 151 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+Y+ A +++ Sbjct: 152 DKVTRNQCQECRFKKCIYVGMATDLV 177
>TFB4_KLULA (Q6CVX9) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 337 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = -2 Query: 504 FCHKKTIDMGYVCSVCLSIFCKY--HKKCSTCGSEFSRVSMPDLNSLP 367 F K + +G+VCSVCL + +KC C S F + L P Sbjct: 275 FLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPFDSKIIARLRRKP 322
>THB_CHICK (P68306) Thyroid hormone receptor beta| Length = 369 Score = 29.6 bits (65), Expect = 4.8 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R +L+ YS E C+ Sbjct: 9 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPT------YSCKYE-GKCVI 61 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+++ A +++ Sbjct: 62 DKVTRNQCQECRFKKCIFVGMATDLV 87
>THB_CAIMO (P68305) Thyroid hormone receptor beta| Length = 369 Score = 29.6 bits (65), Expect = 4.8 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 486 IDMGYVCSVCLSIFCKYHKKCST---CGSEFSRVSMPDLNSLPDQRQ*YSVNREMPDCIF 316 +D +C VC YH +C T C F R +L+ YS E C+ Sbjct: 9 LDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPT------YSCKYE-GKCVI 61 Query: 315 FLHRPNRCEELRRGSCVYI*RAVNVL 238 N+C+E R C+++ A +++ Sbjct: 62 DKVTRNQCQECRFKKCIFVGMATDLV 87
>TFB4_YEAST (Q12004) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) (General transcription and DNA repair factor IIH subunit TFB4) (TFIIH Length = 338 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 492 KTIDMGYVCSVCLSI--FCKYHKKCSTCGSEFSRVSMPDLNSLP 367 + + +G++CSVCL + KC C S+F + L P Sbjct: 281 RVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDEHVIAKLKRKP 324
>GNDS_HUMAN (Q12967) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 914 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = +3 Query: 18 IVLHQLS*ISCLLPKKS----EI*EVIYFPSLFCISLARFQVVHSGRSSQRRM*YQN 176 +VLH + + LP+ EI E + ++ ISL + Q+ H G QR + Y+N Sbjct: 45 VVLHSFTQLDPDLPRPESSTQEIGEELINGVIYSISLRKVQLHHGGNKGQRWLGYEN 101
>AOSL_PLEHO (O16025) Allene oxide synthase-lipoxygenase protein [Includes: Allene| oxide synthase (EC 4.2.1.92) (Hydroperoxidehydrase); Arachidonate 8-lipoxygenase (EC 1.13.11.40)] Length = 1066 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -1 Query: 343 KQGNARLHILSSQAESLRGAEEGIVCVYL--KGCQCINYQGNWSATLW 206 K+G A L + S S A + I VY+ K + Y GN+SAT W Sbjct: 971 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAW 1018
>UN112_DROME (Q9VZI3) Unc-112-related protein (Fermitin-1)| Length = 708 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = -1 Query: 325 LHILSSQAESLRGAEEGIVCVYLKGCQC---INY-QGNWSATLWTLSQVKN 185 LH+ SQ ES RGA + + LKGC+ +N QG ++ L S+++N Sbjct: 432 LHLYKSQDESRRGAP--TISINLKGCEVTPDVNLAQGKFAIRLEVPSEIRN 480
>ZN613_HUMAN (Q6PF04) Zinc finger protein 613| Length = 617 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 16/52 (30%) Frame = -2 Query: 498 HKKT--IDMGYVCSVCLSIFCK-----YHKK---------CSTCGSEFSRVS 391 H++T ID +VC+ C F K YH++ CS CG FSR S Sbjct: 194 HQRTQNIDKPHVCTECGKAFLKKSRLIYHQRVHTGEKPHGCSICGKAFSRKS 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,654,747 Number of Sequences: 219361 Number of extensions: 1492809 Number of successful extensions: 3623 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3605 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
