ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26k05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016483.1| Zea mays clone Contig316 mRNA sequence 62 2e-06
2gb|BT018033.1| Zea mays clone EL01N0530E08.c mRNA sequence 62 2e-06
3ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa805... 60 8e-06
4ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa804... 60 8e-06
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
6dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
7dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
8ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 46 0.12
9ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
10emb|CR855378.6| Zebrafish DNA sequence from clone CH211-284K16 i... 46 0.12
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
12dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
13dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
14gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, c... 44 0.46
15gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome... 44 0.46
16gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, com... 44 0.46
17gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, com... 44 0.46
18gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E... 44 0.46
19gb|AF058978.1|AF058978 Drosophila saltans xanthine dehydrogenase... 44 0.46
20gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, com... 44 0.46
21gb|AC149392.2| Phakopsora pachyrhizi clone JGIAFNA-5B18, complet... 42 1.8
22emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chr... 42 1.8
23emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chro... 42 1.8
24dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.8
25ref|NM_179791.1| Arabidopsis thaliana ATPase AT2G28520 mRNA, com... 40 7.2
26gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.2
27gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 40 7.2
28gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 7.2
29ref|XM_370276.1| Magnaporthe grisea 70-15 chromosome II predicte... 40 7.2
30gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial... 40 7.2
31gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosom... 40 7.2
32gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, co... 40 7.2
33emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in ... 40 7.2
34gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 40 7.2
35gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.2
36emb|AL359771.27| Human DNA sequence from clone CTA-520D8 on chro... 40 7.2
37emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chr... 40 7.2
38emb|AL353628.7| Human DNA sequence from clone RP11-142F6 on chro... 40 7.2
39emb|AL121961.8|HSJ104A17 Human DNA sequence from clone RP1-104A1... 40 7.2
40gb|AY091008.1| Arabidopsis thaliana putative vacuolar proton-ATP... 40 7.2
41gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 7.2
42emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 7.2
43emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in... 40 7.2
44gb|AC165057.2| Phakopsora pachyrhizi clone JGIAFNA-1561A7, compl... 40 7.2
45gb|AC165054.1| Phakopsora pachyrhizi clone JGIAFNA-1345A14, comp... 40 7.2
46emb|AL646098.9| Mouse DNA sequence from clone RP23-107I24 on chr... 40 7.2
47emb|BX538235.1|HSM806469 Homo sapiens genomic DNA; cDNA DKFZp686... 40 7.2
48gb|AC063951.22| Homo sapiens 12 BAC RP11-219I17 (Roswell Park Ca... 40 7.2
49dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, ... 40 7.2
50gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.2
51gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete se... 40 7.2
52gb|AC006587.5| Arabidopsis thaliana chromosome 2 clone T17D12 ma... 40 7.2
53gb|AC105423.4| Homo sapiens BAC clone RP11-746G6 from 4, complet... 40 7.2
54gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 7.2
55gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, comp... 40 7.2
56gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.2
57dbj|AK082688.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 7.2
58emb|BX005363.6| Zebrafish DNA sequence from clone CH211-243H4 in... 40 7.2
59dbj|AB071068.1| Macaca fascicularis testis cDNA clone:QtsA-16284... 40 7.2
60gb|AC097499.3| Homo sapiens BAC clone RP11-333J2 from 2, complet... 40 7.2
61gb|AC011751.2|AC011751 Homo sapiens BAC clone RP11-478I15 from Y... 40 7.2
62gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, comp... 40 7.2
63dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 40 7.2
64emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-8... 40 7.2
65gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 7.2
66emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, l... 40 7.2
67emb|BX005419.6| Zebrafish DNA sequence from clone DKEY-199L1 in ... 40 7.2
68emb|AL954372.6| Zebrafish DNA sequence from clone CH211-259G3, c... 40 7.2
69emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chrom... 40 7.2
70emb|AL672273.9| Mouse DNA sequence from clone RP23-15A12 on chro... 40 7.2 
>gb|BT016483.1| Zea mays clone Contig316 mRNA sequence
          Length = 1124

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 403 gccgtcggtgtgggccttgaggcccaagacgtggtctggccttggacactgagggtagta 462
           |||||| | ||| ||||||| |||||||||| | || |||||||||||  ||||||||||
Sbjct: 660 gccgtcagagtgagccttgatgcccaagacgagctccggccttggacaaggagggtagta 601

                  
Query: 463 gttgaat 469
           |||||||
Sbjct: 600 gttgaat 594
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>gb|BT018033.1| Zea mays clone EL01N0530E08.c mRNA sequence
          Length = 1095

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 403 gccgtcggtgtgggccttgaggcccaagacgtggtctggccttggacactgagggtagta 462
           |||||| | ||| ||||||| |||||||||| | || |||||||||||  ||||||||||
Sbjct: 605 gccgtcagagtgagccttgatgcccaagacgagctccggccttggacaaggagggtagta 546

                  
Query: 463 gttgaat 469
           |||||||
Sbjct: 545 gttgaat 539
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>ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa8052 predicted mRNA
          Length = 1050

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 440 ggccttggacactgagggtagtagttgaat 469
           ||||||||||||||||||||||||||||||
Sbjct: 644 ggccttggacactgagggtagtagttgaat 615
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>ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa8042 predicted mRNA
          Length = 1050

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 440 ggccttggacactgagggtagtagttgaat 469
           ||||||||||||||||||||||||||||||
Sbjct: 644 ggccttggacactgagggtagtagttgaat 615
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 440     ggccttggacactgagggtagtagttgaat 469
               ||||||||||||||||||||||||||||||
Sbjct: 3900954 ggccttggacactgagggtagtagttgaat 3900925



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 440     ggccttggacactgagggtagtagttgaat 469
               ||||||||||||||||||||||||||||||
Sbjct: 3889131 ggccttggacactgagggtagtagttgaat 3889102



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 440     ggccttggacactgagggtagtagttgaat 469
               ||||||||||||||||||||||||||||||
Sbjct: 3851075 ggccttggacactgagggtagtagttgaat 3851046



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 435     ggtctggccttggacactgagggtagtagttgaat 469
               |||| |||||||||||  |||||||||||||||||
Sbjct: 3905450 ggtcaggccttggacagggagggtagtagttgaat 3905416



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 435     ggtctggccttggacactgagggtagtagttgaat 469
               |||| |||||||||||  |||||||||||||||||
Sbjct: 3893559 ggtcaggccttggacagggagggtagtagttgaat 3893525



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 435     ggtctggccttggacactgagggtagtagttgaat 469
               |||| |||||||||||  |||||||||||||||||
Sbjct: 3855571 ggtcaggccttggacagggagggtagtagttgaat 3855537
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0035I03
          Length = 153749

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 440  ggccttggacactgagggtagtagttgaat 469
            ||||||||||||||||||||||||||||||
Sbjct: 6830 ggccttggacactgagggtagtagttgaat 6801



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 435   ggtctggccttggacactgagggtagtagttgaat 469
             |||| |||||||||||  |||||||||||||||||
Sbjct: 11326 ggtcaggccttggacagggagggtagtagttgaat 11292
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                            
Query: 440    ggccttggacactgagggtagtagttgaat 469
              ||||||||||||||||||||||||||||||
Sbjct: 147085 ggccttggacactgagggtagtagttgaat 147056



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                            
Query: 440    ggccttggacactgagggtagtagttgaat 469
              ||||||||||||||||||||||||||||||
Sbjct: 109029 ggccttggacactgagggtagtagttgaat 109000



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 435    ggtctggccttggacactgagggtagtagttgaat 469
              |||| |||||||||||  |||||||||||||||||
Sbjct: 151581 ggtcaggccttggacagggagggtagtagttgaat 151547



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 435    ggtctggccttggacactgagggtagtagttgaat 469
              |||| |||||||||||  |||||||||||||||||
Sbjct: 113525 ggtcaggccttggacagggagggtagtagttgaat 113491
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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 435 ggtctggccttggacactgagggtagtagttgaat 469
           |||| |||||||||||  |||||||||||||||||
Sbjct: 652 ggtcaggccttggacagggagggtagtagttgaat 618
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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 435 ggtctggccttggacactgagggtagtagttgaat 469
           |||| |||||||||||  |||||||||||||||||
Sbjct: 652 ggtcaggccttggacagggagggtagtagttgaat 618
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>emb|CR855378.6| Zebrafish DNA sequence from clone CH211-284K16 in linkage group 14,
             complete sequence
          Length = 151573

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 93    ttgaaaatatgtgaaaatataaa 115
             |||||||||||||||||||||||
Sbjct: 21897 ttgaaaatatgtgaaaatataaa 21919
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 435      ggtctggccttggacactgagggtagtagttgaat 469
                |||| |||||||||||  |||||||||||||||||
Sbjct: 10388326 ggtcaggccttggacagggagggtagtagttgaat 10388292
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>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G10
          Length = 133372

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 435   ggtctggccttggacactgagggtagtagttgaat 469
             |||| |||||||||||  |||||||||||||||||
Sbjct: 30748 ggtcaggccttggacagggagggtagtagttgaat 30714
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>dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J09, full
            insert sequence
          Length = 1729

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 435  ggtctggccttggacactgagggtagtagttgaat 469
            |||| |||||||||||  |||||||||||||||||
Sbjct: 1001 ggtcaggccttggacagggagggtagtagttgaat 967
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>gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, complete sequence
          Length = 212604

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 93     ttgaaaatatgtgaaaatataa 114
              ||||||||||||||||||||||
Sbjct: 170854 ttgaaaatatgtgaaaatataa 170875
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>gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome 16, complete sequence
          Length = 197831

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 93     ttgaaaatatgtgaaaatataa 114
              ||||||||||||||||||||||
Sbjct: 158830 ttgaaaatatgtgaaaatataa 158809
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>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 351    tgttctcaagctggagcccctc 372
              ||||||||||||||||||||||
Sbjct: 126347 tgttctcaagctggagcccctc 126326
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>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence
          Length = 199782

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 351    tgttctcaagctggagcccctc 372
              ||||||||||||||||||||||
Sbjct: 186926 tgttctcaagctggagcccctc 186905
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>gb|AC007182.3|AC007182 Homo sapiens chromosome 14 clone BAC 507E23 map 14q24.3, complete
             sequence
          Length = 192389

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 94    tgaaaatatgtgaaaatataaactcgttaa 123
             ||||||||||| ||||||||||||| ||||
Sbjct: 50037 tgaaaatatgtaaaaatataaactctttaa 50066
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>gb|AF058978.1|AF058978 Drosophila saltans xanthine dehydrogenase (Xdh) gene, partial cds
          Length = 2212

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 490 gtcgccgatcatgtttacgagg 511
           ||||||||||||||||||||||
Sbjct: 727 gtcgccgatcatgtttacgagg 748
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>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 351   tgttctcaagctggagcccctc 372
             ||||||||||||||||||||||
Sbjct: 47988 tgttctcaagctggagcccctc 47967
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>gb|AC149392.2| Phakopsora pachyrhizi clone JGIAFNA-5B18, complete sequence
          Length = 36599

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    tgaaaatatgtgaaaatataa 114
             |||||||||||||||||||||
Sbjct: 25914 tgaaaatatgtgaaaatataa 25894
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>emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chromosome 6, complete
             sequence
          Length = 160891

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    aaatatgtgaaaatataaact 117
             |||||||||||||||||||||
Sbjct: 86598 aaatatgtgaaaatataaact 86618
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>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete
             sequence
          Length = 155196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    gttttatattagggtttaatg 40
             |||||||||||||||||||||
Sbjct: 54623 gttttatattagggtttaatg 54603
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    gatcttcacgccgtcgatggc 217
              |||||||||||||||||||||
Sbjct: 619185 gatcttcacgccgtcgatggc 619165
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>ref|NM_179791.1| Arabidopsis thaliana ATPase AT2G28520 mRNA, complete cds
          Length = 2947

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  acaaaaatcttgaaaatatgtgaa 107
           |||||||| |||||||||||||||
Sbjct: 887 acaaaaatattgaaaatatgtgaa 910
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 248     tttttccatgtagtcgttgngct 270
               ||||||||||||||||||| |||
Sbjct: 2631885 tttttccatgtagtcgttgcgct 2631907
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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    acattttacatgaggagtac 79
             ||||||||||||||||||||
Sbjct: 86957 acattttacatgaggagtac 86976
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    gagcccctcggcatcggcga 383
              ||||||||||||||||||||
Sbjct: 231648 gagcccctcggcatcggcga 231629
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>ref|XM_370276.1| Magnaporthe grisea 70-15 chromosome II predicted protein
           (MG06773.4) partial mRNA
          Length = 2460

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 299 gtcatccactagctctgaca 318
           ||||||||||||||||||||
Sbjct: 879 gtcatccactagctctgaca 898
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>gb|AY569234.1| Adelotettix gigas 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 509

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ttttatattagggtttaatg 40
           ||||||||||||||||||||
Sbjct: 257 ttttatattagggtttaatg 276
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>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence
          Length = 222950

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tcatccactagctctgacac 319
             ||||||||||||||||||||
Sbjct: 42811 tcatccactagctctgacac 42792
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>gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, complete sequence
          Length = 167138

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gtgtcaaggaatttttccat 256
             ||||||||||||||||||||
Sbjct: 30012 gtgtcaaggaatttttccat 30031
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>emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13,
             complete sequence
          Length = 217981

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    tacacacacaaaaatcttgaaaat 100
             |||||||||||| |||||||||||
Sbjct: 85233 tacacacacaaacatcttgaaaat 85210
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>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gtgtcaaggaatttttccat 256
              ||||||||||||||||||||
Sbjct: 138812 gtgtcaaggaatttttccat 138831
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    ccctcggcatcggcgaagtt 387
              ||||||||||||||||||||
Sbjct: 520322 ccctcggcatcggcgaagtt 520341
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>emb|AL359771.27| Human DNA sequence from clone CTA-520D8 on chromosome 1 Contains the 3'
             end of the gene for lung type-I cell membrane-associated
             glycoprotein (T1A-2), a novel gene, the 5' end of the
             PRDM2 gene for PR domain containing 2 with ZNF domain and
             a CpG island, complete sequence
          Length = 111182

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    tacacacacaaaaatcttga 96
             ||||||||||||||||||||
Sbjct: 45594 tacacacacaaaaatcttga 45613
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>emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chromosome Xq11.2-13.1
            Contains a GrpE-like 2 mitochondrial (E. coli) pseudogene
            and a novel pseudogene, complete sequence
          Length = 131070

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  gtgtcaaggaatttttccat 256
            ||||||||||||||||||||
Sbjct: 4410 gtgtcaaggaatttttccat 4429
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>emb|AL353628.7| Human DNA sequence from clone RP11-142F6 on chromosome 13q22.3-32.2,
            complete sequence
          Length = 26685

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gtgtcaaggaatttttccat 256
            ||||||||||||||||||||
Sbjct: 7894 gtgtcaaggaatttttccat 7875
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>emb|AL121961.8|HSJ104A17 Human DNA sequence from clone RP1-104A17 on chromosome 6q12-13 Contains
             the 3' end of the gene for stromal membrane-associated
             protein SMAP1A and the 3' end of the B3GAT2 gene for
             beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase
             S) (GLCATS, KIAA1963), complete sequence
          Length = 84300

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gtgtcaaggaatttttccat 256
             ||||||||||||||||||||
Sbjct: 83462 gtgtcaaggaatttttccat 83481
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>gb|AY091008.1| Arabidopsis thaliana putative vacuolar proton-ATPase subunit
           (At2g28520) mRNA, complete cds
          Length = 2923

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  acaaaaatcttgaaaatatgtgaa 107
           |||||||| |||||||||||||||
Sbjct: 887 acaaaaatattgaaaatatgtgaa 910
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tcaaggaatttttccatgta 259
              ||||||||||||||||||||
Sbjct: 954835 tcaaggaatttttccatgta 954854
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>emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              14/17
          Length = 348498

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tcaaggaatttttccatgta 259
              ||||||||||||||||||||
Sbjct: 242852 tcaaggaatttttccatgta 242833
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>emb|CR854945.5| Zebrafish DNA sequence from clone DKEY-155H10 in linkage group 13,
              complete sequence
          Length = 231490

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     tacacacacaaaaatcttgaaaat 100
              |||||||||||| |||||||||||
Sbjct: 196817 tacacacacaaacatcttgaaaat 196794
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>gb|AC165057.2| Phakopsora pachyrhizi clone JGIAFNA-1561A7, complete sequence
          Length = 31405

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   aatcttgaaaatatgtgaaaatat 112
            |||| |||||||||||||||||||
Sbjct: 3396 aatcatgaaaatatgtgaaaatat 3373
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>gb|AC165054.1| Phakopsora pachyrhizi clone JGIAFNA-1345A14, complete sequence
          Length = 37601

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   aatcttgaaaatatgtgaaaatat 112
            |||| |||||||||||||||||||
Sbjct: 3926 aatcatgaaaatatgtgaaaatat 3903
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>emb|AL646098.9| Mouse DNA sequence from clone RP23-107I24 on chromosome 11, complete
             sequence
          Length = 200222

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aaatatgtgaaaatataaac 116
             ||||||||||||||||||||
Sbjct: 15300 aaatatgtgaaaatataaac 15281
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>emb|BX538235.1|HSM806469 Homo sapiens genomic DNA; cDNA DKFZp686D2348 (from clone
            DKFZp686D2348)
          Length = 6443

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aaaatatgtgaaaatataaa 115
            ||||||||||||||||||||
Sbjct: 4579 aaaatatgtgaaaatataaa 4598
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>gb|AC063951.22| Homo sapiens 12 BAC RP11-219I17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181259

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gtgtcaaggaatttttccat 256
             ||||||||||||||||||||
Sbjct: 28956 gtgtcaaggaatttttccat 28937
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>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence
          Length = 190308

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gtgtcaaggaatttttccat 256
              ||||||||||||||||||||
Sbjct: 115378 gtgtcaaggaatttttccat 115359
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      gtgtcaaggaatttttccat 256
                ||||||||||||||||||||
Sbjct: 17290304 gtgtcaaggaatttttccat 17290323
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>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
          Length = 112154

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    acacaaaaatcttgaaaata 101
             ||||||||||||||||||||
Sbjct: 32648 acacaaaaatcttgaaaata 32667
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>gb|AC006587.5| Arabidopsis thaliana chromosome 2 clone T17D12 map mi54, complete
             sequence
          Length = 86579

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    acaaaaatcttgaaaatatgtgaa 107
             |||||||| |||||||||||||||
Sbjct: 47045 acaaaaatattgaaaatatgtgaa 47068
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>gb|AC105423.4| Homo sapiens BAC clone RP11-746G6 from 4, complete sequence
          Length = 100760

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaaatatgtgaaaatataaa 115
             ||||||||||||||||||||
Sbjct: 75347 aaaatatgtgaaaatataaa 75328
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>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gaggagtacacacacaaaaa 90
             ||||||||||||||||||||
Sbjct: 77623 gaggagtacacacacaaaaa 77642
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>gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, complete sequence
          Length = 162281

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    tcttgaaaatatgtgaaaatataa 114
             |||||||||||||| |||||||||
Sbjct: 23680 tcttgaaaatatgttaaaatataa 23703
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     ggatcttcacgccgtcgatg 215
               ||||||||||||||||||||
Sbjct: 2051347 ggatcttcacgccgtcgatg 2051366
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>dbj|AK082688.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230086H14
            product:unclassifiable, full insert sequence
          Length = 2523

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  caggtctcttgtcatccact 308
            ||||||||||||||||||||
Sbjct: 2342 caggtctcttgtcatccact 2323
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>emb|BX005363.6| Zebrafish DNA sequence from clone CH211-243H4 in linkage group 5,
             complete sequence
          Length = 172224

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   tcaaggaatttttccatgta 259
             ||||||||||||||||||||
Sbjct: 64512 tcaaggaatttttccatgta 64493
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>dbj|AB071068.1| Macaca fascicularis testis cDNA clone:QtsA-16284, similar to human
           hypothetical protein MGC50811, mRNA, NM_198559
          Length = 1216

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 ctggccttggacactgaggg 457
           ||||||||||||||||||||
Sbjct: 484 ctggccttggacactgaggg 503
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>gb|AC097499.3| Homo sapiens BAC clone RP11-333J2 from 2, complete sequence
          Length = 193973

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gtgtcaaggaatttttccat 256
              ||||||||||||||||||||
Sbjct: 138897 gtgtcaaggaatttttccat 138878
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>gb|AC011751.2|AC011751 Homo sapiens BAC clone RP11-478I15 from Y, complete sequence
          Length = 179715

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gtgtcaaggaatttttccat 256
              ||||||||||||||||||||
Sbjct: 141557 gtgtcaaggaatttttccat 141538
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>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence
          Length = 213942

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 66     tacatgaggagtacacacacaaaa 89
              ||||||| ||||||||||||||||
Sbjct: 175815 tacatgaagagtacacacacaaaa 175792
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>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gtgtcaaggaatttttccat 256
             ||||||||||||||||||||
Sbjct: 24669 gtgtcaaggaatttttccat 24650
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>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 216647

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     aaaatatgtgaaaatataaa 115
              ||||||||||||||||||||
Sbjct: 197117 aaaatatgtgaaaatataaa 197098
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     tcaaggaatttttccatgta 259
               ||||||||||||||||||||
Sbjct: 2684005 tcaaggaatttttccatgta 2683986
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>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88
          Length = 595

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  tacatgaggagtacacacac 85
           ||||||||||||||||||||
Sbjct: 317 tacatgaggagtacacacac 298
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>emb|BX005419.6| Zebrafish DNA sequence from clone DKEY-199L1 in linkage group 5,
             complete sequence
          Length = 179504

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tcaaggaatttttccatgta 259
             ||||||||||||||||||||
Sbjct: 49860 tcaaggaatttttccatgta 49879
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>emb|AL954372.6| Zebrafish DNA sequence from clone CH211-259G3, complete sequence
          Length = 162539

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tgaaaatatgtgaaaatata 113
              ||||||||||||||||||||
Sbjct: 135446 tgaaaatatgtgaaaatata 135465
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>emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chromosome 4, complete
              sequence
          Length = 237323

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     acacacaaaaatcttgaaaa 99
              ||||||||||||||||||||
Sbjct: 110742 acacacaaaaatcttgaaaa 110723
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>emb|AL672273.9| Mouse DNA sequence from clone RP23-15A12 on chromosome 2, complete
              sequence
          Length = 202965

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    caggtctcttgtcatccact 308
              ||||||||||||||||||||
Sbjct: 168785 caggtctcttgtcatccact 168766


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,510,962
Number of Sequences: 3902068
Number of extensions: 4510962
Number of successful extensions: 93337
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92990
Number of HSP's gapped (non-prelim): 347
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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