| Clone Name | rbags26k02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL139244.21| Human DNA sequence from clone RP5-1043G4 on chromosome 1p32.1-33 Contains the 3' end of a novel gene (FLJ46354), the TTC4 gene for tetratricopeptide repeat domain 4, a novel gene (DKFZp727A071), the 3' end of a novel gene (FLJ20619) and three CpG islands, complete sequence Length = 129156 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 92 aaaatctaagagtataagtttgg 114 ||||||||||||||||||||||| Sbjct: 20065 aaaatctaagagtataagtttgg 20043
>emb|AL021394.10|HS237J2 Human DNA sequence from clone RP1-237J2 on chromosome 20q12-13.13 Contains part of the NCOA3 gene for nuclear receptor coactivator 3 and a CpG island, complete sequence Length = 68589 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 123 acccaagtccaaacataaaattc 145 ||||||||||||||||||||||| Sbjct: 65673 acccaagtccaaacataaaattc 65651
>gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1, complete sequence Length = 122146 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 92 aaaatctaagagtataagtttgg 114 ||||||||||||||||||||||| Sbjct: 13142 aaaatctaagagtataagtttgg 13164
>dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH16 Length = 68098 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 125 ccaagtccaaacataaaattctg 147 ||||||||||||||||||||||| Sbjct: 63777 ccaagtccaaacataaaattctg 63799
>dbj|AP000919.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-737O24, complete sequence Length = 184440 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 123 acccaagtccaaacataaaattc 145 ||||||||||||||||||||||| Sbjct: 155014 acccaagtccaaacataaaattc 155036
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 125 ccaagtccaaacataaaattctg 147 ||||||||||||||||||||||| Sbjct: 5807 ccaagtccaaacataaaattctg 5785
>dbj|AP005431.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete sequence Length = 177785 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 123 acccaagtccaaacataaaattc 145 ||||||||||||||||||||||| Sbjct: 31093 acccaagtccaaacataaaattc 31115
>gb|AC155712.8| Mus musculus 10 BAC RP24-183O8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151709 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 tacattcacccaagtccaaacataaaatt 144 |||||||||||| ||||| |||||||||| Sbjct: 52965 tacattcacccatgtccacacataaaatt 52937
>ref|XM_869149.1| PREDICTED: Bos taurus similar to Choline transporter-like protein 4, transcript variant 2 (LOC520625), mRNA Length = 2287 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 1018 tgctgctgatgctcatcttcc 1038
>ref|XM_598872.2| PREDICTED: Bos taurus similar to Choline transporter-like protein 4, transcript variant 1 (LOC520625), mRNA Length = 2287 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 1018 tgctgctgatgctcatcttcc 1038
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence Length = 175313 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 taaaggggccaactcaaaatt 450 ||||||||||||||||||||| Sbjct: 110133 taaaggggccaactcaaaatt 110153
>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence Length = 205237 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 taaaggggccaactcaaaatt 450 ||||||||||||||||||||| Sbjct: 191925 taaaggggccaactcaaaatt 191945
>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence Length = 227648 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 tttgataatttaataggattt 188 ||||||||||||||||||||| Sbjct: 165702 tttgataatttaataggattt 165722
>ref|XM_538839.2| PREDICTED: Canis familiaris similar to NG22 protein isoform 2 (LOC481718), mRNA Length = 2136 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 962 tgctgctgatgctcatcttcc 982
>gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome 12, complete sequence Length = 196285 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 taactcatttttcagatataa 482 ||||||||||||||||||||| Sbjct: 114546 taactcatttttcagatataa 114526
>gb|AC127371.3| Mus musculus BAC clone RP23-35D4 from 15, complete sequence Length = 210688 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 483 gcttgcttgttttccattgta 503 ||||||||||||||||||||| Sbjct: 175379 gcttgcttgttttccattgta 175399
>emb|AL844853.23| Human DNA sequence from clone DAQB-331I12 on chromosome 6 Contains the NEU1 gene for sialidase 1 (lysosomal sialidase), the C6orf29 gene for chromosome 6 open reading frame 29, the BAT8 gene for HLA-B associated transcript 8, a novel transcript DAQB-331I12.5, the ZBTB12 gene (previously C6orf46) for zinc finger and BTB domain containing 12, the C2 gene for complement component 2, the Bf gene for B-factor, properdin, the RDBP gene for RD RNA binding protein, the SKIV2L gene for superkiller viralicidic activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3 homolog Z (C. elegans), the STK19 gene for serine/threonine kinase 19, the 5' end of the C4A gene for complement component 4A and 8 CpG isalnds, complete sequence Length = 153464 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 24795 tgctgctgatgctcatcttcc 24775
>emb|AL671762.10| Human DNA sequence from clone XXbac-254B15 on chromosome 6 contains the 5' end of the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene forchromosome 6 open reading frame 29, the gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and eight CpG islands, complete sequence Length = 113582 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 78520 tgctgctgatgctcatcttcc 78500
>emb|AL662834.8| Human DNA sequence from clone XXbac-40G17 on chromosome 6 contains the MSH5 gene for mutS homolog 5 (e. coli), the gene for NG23 protein, the gene for chromosome 6 open reading frame 27, the VARS2 gene for valyl-tRNA synthetase 2, the gene for chromosome 6 open reading frame 28, the HSPA1L gene for heat shock 70kDa protein 1-like, the HSPA1A gene for heat shock 70kDa protein 1A, the HSPA1B gene for heat shock 70kDa protein 1B, the gene for chromosome 6 open reading frame 48, the NEU1 gene for sialidase 1 (lysosomal sialidase), the gene for chromosome 6 open reading frame 29, the BAT8 gene for HLA-B associated transcript 8, the gene for chromosome 6 open reading frame 46 and nine CpG islands, complete sequence Length = 179894 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 134731 tgctgctgatgctcatcttcc 134711
>emb|BX004968.20| Zebrafish DNA sequence from clone DKEY-35I13 in linkage group 15, complete sequence Length = 208706 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtccaaacataaaattctgtc 149 ||||||||||||||||||||| Sbjct: 100333 gtccaaacataaaattctgtc 100353
>emb|CR388202.9| Human DNA sequence from clone DADB-333F21 on chromosome 6, complete sequence Length = 80364 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 63752 tgctgctgatgctcatcttcc 63732
>emb|AL833009.1|HSM804320 Homo sapiens mRNA; cDNA DKFZp666M124 (from clone DKFZp666M124) Length = 2333 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttcc 558 ||||||||||||||||||||| Sbjct: 727 tgctgctgatgctcatcttcc 747
>gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, complete sequence Length = 137848 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ataatttaataggatttaata 192 ||||||||||||||||||||| Sbjct: 14599 ataatttaataggatttaata 14579
>gb|AC013439.11| Homo sapiens BAC clone RP11-270G18 from 2, complete sequence Length = 167891 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 aaaattctgtccaacatagta 159 ||||||||||||||||||||| Sbjct: 47165 aaaattctgtccaacatagta 47145
>gb|AF218055.1|AF218055 Staphylococcus chromogenes metalloprotease (scp) gene, complete cds Length = 1506 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ttacattcacccaagtccaaa 135 ||||||||||||||||||||| Sbjct: 1170 ttacattcacccaagtccaaa 1190
>gb|AC134793.10| Mus musculus chromosome 15, clone RP23-159M8, complete sequence Length = 216860 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 gcttgcttgttttccattgta 503 ||||||||||||||||||||| Sbjct: 188801 gcttgcttgttttccattgta 188781
>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 148515 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 taactcatttttcagatataa 482 ||||||||||||||||||||| Sbjct: 100544 taactcatttttcagatataa 100524
>gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome 3, complete sequence Length = 203513 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aatttaataggatttaatat 193 |||||||||||||||||||| Sbjct: 143753 aatttaataggatttaatat 143772
>ref|XM_513773.1| PREDICTED: Pan troglodytes LOC457271 (LOC457271), mRNA Length = 988 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 958 tgctgctgatgctcatcttc 977
>gb|AC162466.6| Mus musculus 6 BAC RP23-196O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186817 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aaataaatactctaaagaaa 403 |||||||||||||||||||| Sbjct: 17474 aaataaatactctaaagaaa 17455
>ref|NM_018659.2| Homo sapiens cytokine-like 1 (CYTL1), mRNA Length = 1019 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 41 cctctgcccgtgctgctgctgctc 64
>ref|NM_144697.2| Homo sapiens chromosome 1 open reading frame 51 (C1orf51), mRNA Length = 1758 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 1577 tgctgctgatgctcatcttc 1596
>gb|AC098878.3| Mus musculus BAC clone RP23-2G23 from 4, complete sequence Length = 209021 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacaccatcaactatgacaa 93 |||||||||||||||||||| Sbjct: 113710 cacaccatcaactatgacaa 113729
>gb|AY359101.1| Homo sapiens clone DNA93011 HGS_RE295 (UNQ1942) mRNA, complete cds Length = 999 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 42 cctctgcccgtgctgctgctgctc 65
>emb|AL357083.19| Human DNA sequence from clone RP11-562P17 on chromosome 13 Contains part of the NEAB gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a prohibitin (PHB) pseudogene, complete sequence Length = 134156 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ctttatctaaaacttatgta 431 |||||||||||||||||||| Sbjct: 103723 ctttatctaaaacttatgta 103742
>emb|AL353711.13| Human DNA sequence from clone RP11-187K14 on chromosome 9, complete sequence Length = 79351 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 tttccatcttgtaactttatttta 276 |||||||||||||| ||||||||| Sbjct: 32118 tttccatcttgtaattttatttta 32095
>emb|AL138690.19| Human DNA sequence from clone RP11-307O13 on chromosome 13q12.3-14.2 Contains the 5' end of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a CpG island, complete sequence Length = 186593 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 caaactgtacagcaaaataa 389 |||||||||||||||||||| Sbjct: 128198 caaactgtacagcaaaataa 128179
>emb|AL138795.21| Human DNA sequence from clone RP4-790G17 on chromosome 1q21.1-21.3 Contains the ANP32E gene for acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, the CA14 gene for carbonic anhydrase XIV, the gene for a likely ortholog of C. elegans anterior pharynx defective 1A (APH-1A), the gene for a novel protein (FLJ23221), a novel gene and the MRPS21 gene for mitochondrial ribosomal protein S21, complete sequence Length = 132823 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 101128 tgctgctgatgctcatcttc 101147
>gb|BC047238.1| Homo sapiens chromosome 1 open reading frame 51, mRNA (cDNA clone MGC:57442 IMAGE:5273646), complete cds Length = 1758 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 1577 tgctgctgatgctcatcttc 1596
>emb|AJ303141.2|ECO303141 Escherichia coli pathogenicity island I Length = 112929 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 83758 ataaaattctgtccaacata 83777
>emb|AJ277443.1|ECO277443 Escherichia coli DNA for locus of enterocyte effacement II (LEE II) Length = 60073 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 20123 ataaaattctgtccaacata 20104
>emb|AL844848.12| Mouse DNA sequence from clone RP23-247N5 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D and a CpG island, complete sequence Length = 199012 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cacaccatcaactatgacaa 93 |||||||||||||||||||| Sbjct: 71067 cacaccatcaactatgacaa 71086
>gb|AC004802.1| Homo sapiens 12p13.3 RPCI4-773N5 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 57304 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 ctgtacagcaaaataaatactctaaaga 401 ||||||||||||||||||| || ||||| Sbjct: 36631 ctgtacagcaaaataaataatcaaaaga 36604
>emb|AJ633130.1| Escherichia coli locus of enterocyte effacement, strain 3431-4/86 Length = 38091 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 19872 ataaaattctgtccaacata 19853
>emb|AJ633129.1| Escherichia coli locus of enterocyte effacement, strain 0181-6/86 Length = 35786 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 18560 ataaaattctgtccaacata 18541
>emb|BX470262.7| Zebrafish DNA sequence from clone CH211-120K20 in linkage group 14, complete sequence Length = 164673 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tcttgtaactttattttaat 278 |||||||||||||||||||| Sbjct: 92636 tcttgtaactttattttaat 92655
>emb|CR620065.1| full-length cDNA clone CS0DI065YO20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 976 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 16 cctctgcccgtgctgctgctgctc 39
>dbj|AK056960.1| Homo sapiens cDNA FLJ32398 fis, clone SKMUS2000271 Length = 1310 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 1144 tgctgctgatgctcatcttc 1163
>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence Length = 167590 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aatttaataggatttaatat 193 |||||||||||||||||||| Sbjct: 6915 aatttaataggatttaatat 6896
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 491323 tgctgctgatgctcatcttc 491304
>gb|AC108139.5| Homo sapiens BAC clone RP11-386I19 from 4, complete sequence Length = 61923 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 37920 cctctgcccgtgctgctgctgctc 37897
>gb|AC106047.5| Homo sapiens BAC clone RP11-293A21 from 4, complete sequence Length = 175918 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tataagtttggttacattca 123 |||||||||||||||||||| Sbjct: 94153 tataagtttggttacattca 94134
>gb|AC153596.5| Mus musculus 6 BAC RP23-305C1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 148062 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 aaataaatactctaaagaaa 403 |||||||||||||||||||| Sbjct: 62105 aaataaatactctaaagaaa 62124
>gb|AF311901.1|AF311901 Citrobacter rodentium strain DBS100 pathogenicity island LEE, complete sequence Length = 42001 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 18702 ataaaattctgtccaacata 18683
>emb|BX323460.10| Zebrafish DNA sequence from clone DKEYP-47G11 in linkage group 3, complete sequence Length = 202017 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 ttgttttccattgtacctga 508 |||||||||||||||||||| Sbjct: 47885 ttgttttccattgtacctga 47866
>gb|AF200363.1|AF200363 Escherichia coli Ler (ler), EscR (escR), EscS (escS), EscT (escT), EscU (escU), CesD (cesD), EscC (escC), EscJ (escJ), SepZ (sepZ), EscV (escV), EscN (escN), SepQ (sepQ), Tir (tir), CesT (cesT), intimin (eae), EscD (escD), SepL (sepL), EspA (espA), EspD (espD), EspB (espB), EscF (escF), EspF (espF), and putative transposase genes, complete cds; LifA (lifA) gene, partial cds; and unknown genes Length = 37889 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 19019 ataaaattctgtccaacata 19000
>gb|AF453441.1| Escherichia coli CadC (cadC) gene, partial cds; transposase 2, transposase 1, IS2 transposase, EspG (espG), Ler (ler), EscR (escR), EscS (escS), EscT (escT), EscU (escU), CesD (cesD), EscC (escC), SepD (sepD), EscJ (escJ), SepZ (sepZ), EscV (escV), EscN (escN), SepQ (sepQ), Tir (tir), CesT (cesT), Eae (eae), EscD (escD), SepL (sepL), EspA (espA), EspD (espD), EspB (espB), EscF (escF), EspF (espF), putative transposase, Efa1 (efa1), putative transposase, putative enterotoxin, putative transposase, putative transposase, and CP4-like integrase (int-phe) genes, complete cds; tRNA-Phe gene, complete sequence; and unknown genes Length = 60354 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 21086 ataaaattctgtccaacata 21067
>gb|AC093771.3| Homo sapiens BAC clone RP11-121I23 from 4, complete sequence Length = 165420 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aatttaataggatttaatat 193 |||||||||||||||||||| Sbjct: 53959 aatttaataggatttaatat 53940
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tgcaacaatgtatatacttt 55 |||||||||||||||||||| Sbjct: 30607 tgcaacaatgtatatacttt 30588
>gb|AF193766.1|AF193766 Homo sapiens cytokine-like protein C17 (C17) mRNA, complete cds Length = 999 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 44 cctctgcccgtgctgctgctgctc 67
>gb|AY888582.1| Synthetic construct Homo sapiens clone FLH019155.01X cytokine-like protein C17 (C17) mRNA, complete cds Length = 411 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 16 cctctgcccgtgctgctgctgctc 39
>gb|AY891230.1| Synthetic construct Homo sapiens clone FLH019151.01L cytokine-like protein C17 (C17) mRNA, partial cds Length = 411 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 16 cctctgcccgtgctgctgctgctc 39
>gb|AY893319.1| Synthetic construct Homo sapiens clone FLH058456.01X cytokine-like protein C17 (C17) mRNA, complete cds Length = 411 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 16 cctctgcccgtgctgctgctgctc 39
>emb|Z59544.1|HS161A4F H.sapiens CpG island DNA genomic Mse1 fragment, clone 161a4, forward read cpg161a4.ft1a Length = 193 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 189 cctctgcccgtgctgctgctgctc 166
>gb|BC027999.1| Homo sapiens chromosome 1 open reading frame 51, mRNA (cDNA clone MGC:40115 IMAGE:5194413), complete cds Length = 1478 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 1264 tgctgctgatgctcatcttc 1283
>gb|BC017397.1| Homo sapiens chromosome 1 open reading frame 51, mRNA (cDNA clone IMAGE:4081173), partial cds Length = 1182 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tgctgctgatgctcatcttc 557 |||||||||||||||||||| Sbjct: 992 tgctgctgatgctcatcttc 1011
>gb|BC031391.1| Homo sapiens cytokine-like 1, mRNA (cDNA clone MGC:35397 IMAGE:5186334), complete cds Length = 1038 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cctctgcccgtgctgctgatgctc 551 |||||||||||||||||| ||||| Sbjct: 17 cctctgcccgtgctgctgctgctc 40
>emb|CR925754.15| Zebrafish DNA sequence from clone CH211-148J16 in linkage group 6, complete sequence Length = 150312 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cctgacaagtgatatgtgtt 224 |||||||||||||||||||| Sbjct: 85386 cctgacaagtgatatgtgtt 85405
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cagcctctaaaatttccatc 260 |||||||||||||||||||| Sbjct: 1222595 cagcctctaaaatttccatc 1222614
>gb|AF022236.1|AF022236 Escherichia coli strain E2348/69 pathogenicity island, rOrf1 (rorf1), rOrf2 (rorf2), EscR (escR), EscS (escS), EscT (escT), EscU (escU), CesD (cesD), EscC (escC), EscJ (escJ), SepZ (sepZ), EscV (escV), EscN (escN), SepQ (sepQ), Tir (tir), OrfU (orfU), intimin (eae), EscD (escD), SepL (sepL), EspA (espA), EspD (espD), EspB (espB), EscF (escF), EspF (espF) genes, complete cds Length = 35624 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 18567 ataaaattctgtccaacata 18548
>gb|AF071034.1|AF071034 Escherichia coli L0001 (yicJ) gene, partial cds; tRNA-Sec gene, complete sequence; CP4-like integrase (int), L0004, L0005, L0006, L0007, L0008, L0009, L0010, L0011, L0012, L0013, L0014, L0015, L0016, L0017, L0018 (escF), L0019, L0020 (espB), L0021 (espD), L0022 (espA), L0023 (sepL), L0024 (escD), L0025 (eaeA), L0026 (orfU), L0027 (tir), L0028, L0029, L0030, L0031 (sepQ), L0032, L0033, L0034 (escN), L0035 (escV), L0036, L0037 (sepZ), L0038, L0039 (escJ), L0040, L0041 (escC), L0042 (cesD), L0043, L0044, L0045, L0046 (escU), L0047 (escT), L0048 (escS), L0049 (escR), L0050, L0051, L0052, L0053, L0054, L0055, and L0056 genes, complete cds; and L0057 (yicL) gene, partial cds Length = 45325 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 25697 ataaaattctgtccaacata 25716
>emb|AL928740.6| Zebrafish DNA sequence from clone CH211-129O13, complete sequence Length = 177281 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 ttgttttccattgtacctga 508 |||||||||||||||||||| Sbjct: 122871 ttgttttccattgtacctga 122890
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 gctcctctgcccgtgctgct 544 |||||||||||||||||||| Sbjct: 79057 gctcctctgcccgtgctgct 79076
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 4674656 ataaaattctgtccaacata 4674675
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ataaaattctgtccaacata 156 |||||||||||||||||||| Sbjct: 4605673 ataaaattctgtccaacata 4605692
>emb|AL772139.9| Mouse DNA sequence from clone RP23-8O24 on chromosome 4, complete sequence Length = 109835 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 aatttccatcttgtaactttattt 274 ||||||||||||||||| |||||| Sbjct: 12345 aatttccatcttgtaacgttattt 12322
>emb|AJ312780.1|AME312780 Anthemis melampodina internal transcribed spacer 1 (ITS1), country Egypt: Sinai Length = 253 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tacattcacccaagtccaaa 135 |||||||||||||||||||| Sbjct: 134 tacattcacccaagtccaaa 115 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,202,852 Number of Sequences: 3902068 Number of extensions: 7202852 Number of successful extensions: 138307 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138096 Number of HSP's gapped (non-prelim): 211 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)