ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475849.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
2gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
3gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
4gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6dbj|AK109478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
7dbj|AK101669.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
8gb|AY112514.1| Zea mays CL891_1 mRNA sequence 96 9e-17
9gb|BT016678.1| Zea mays clone Contig511 mRNA sequence 84 3e-13
10ref|NM_185677.1| Oryza sativa (japonica cultivar-group), Ozsa802... 44 0.29
11gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 44 0.29
12emb|CR456637.3| Platypus DNA sequence from clone XX-104A18, comp... 44 0.29
13emb|CR388525.1| Gallus gallus finished cDNA, clone ChEST1020i2 44 0.29
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
16dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
17dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
18dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
20emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.29
21gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complet... 42 1.1
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
23ref|XM_546389.2| PREDICTED: Canis familiaris similar to junction... 42 1.1
24ref|NM_206750.1| Drosophila melanogaster CG15603-PA (CG15603) mR... 42 1.1
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
26gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
27gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 ... 42 1.1
28ref|XM_469941.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
29ref|XM_468423.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
30ref|XM_465863.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
31gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 40 4.5
32gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 40 4.5
33emb|CR682616.2|CNS0FPNO Tetraodon nigroviridis full-length cDNA 40 4.5
34dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.5
38ref|XM_341579.2| PREDICTED: Rattus norvegicus Niemann-Pick disea... 40 4.5
39dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
40dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
41dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
42dbj|AK106020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
43dbj|AK071095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
44gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5 
>ref|XM_475849.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                        
Query: 258  agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
            ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 1562 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1503

                                      
Query: 318  ctgaccggagggttggtatacttgca 343
            |||||||| || || | |||||||||
Sbjct: 1502 ctgaccgggggattcgcatacttgca 1477
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
            complete sequence
          Length = 177861

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                        
Query: 258  agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
            ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 3289 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 3230

                                      
Query: 318  ctgaccggagggttggtatacttgca 343
            |||||||| || || | |||||||||
Sbjct: 3229 ctgaccgggggattcgcatacttgca 3204
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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                         
Query: 258   agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
             ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 78474 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 78415

                                       
Query: 318   ctgaccggagggttggtatacttgca 343
             |||||||| || || | |||||||||
Sbjct: 78414 ctgaccgggggattcgcatacttgca 78389
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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                          
Query: 258    agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
              ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 102977 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 102918

                                        
Query: 318    ctgaccggagggttggtatacttgca 343
              |||||||| || || | |||||||||
Sbjct: 102917 ctgaccgggggattcgcatacttgca 102892
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 258      agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
                ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 27071893 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 27071834

                                          
Query: 318      ctgaccggagggttggtatacttgca 343
                |||||||| || || | |||||||||
Sbjct: 27071833 ctgaccgggggattcgcatacttgca 27071808



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 226     cagcagcagcaggaggacgagggc 249
               ||||||||||||||||| ||||||
Sbjct: 4882747 cagcagcagcaggaggaggagggc 4882724
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>dbj|AK109478.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F04, full
            insert sequence
          Length = 1876

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                        
Query: 258  agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
            ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 1612 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1553

                                      
Query: 318  ctgaccggagggttggtatacttgca 343
            |||||||| || || | |||||||||
Sbjct: 1552 ctgaccgggggattcgcatacttgca 1527
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>dbj|AK101669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D04, full
            insert sequence
          Length = 1938

 Score =  115 bits (58), Expect = 1e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                        
Query: 258  agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
            ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 1661 agcttacccttgagcctcttcttgaggacatccatgacggcaccgaagtcagccttcacg 1602

                                      
Query: 318  ctgaccggagggttggtatacttgca 343
            |||||||| || || | |||||||||
Sbjct: 1601 ctgaccgggggattcgcatacttgca 1576
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>gb|AY112514.1| Zea mays CL891_1 mRNA sequence
          Length = 1846

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                        
Query: 252  gctcaaagcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggcc 311
            ||||| ||||| ||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct: 1607 gctcagagcttgcccttgagcctcttcttcagcacatccatgacggcgccaaagtcggcc 1548

                                            
Query: 312  ttcacgctgaccggagggttggtatacttgca 343
            |||||||| || || |||||||  ||||||||
Sbjct: 1547 ttcacgctcacaggcgggttggagtacttgca 1516
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>gb|BT016678.1| Zea mays clone Contig511 mRNA sequence
          Length = 1283

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 258  agcttacccttgagcctcttcttgaggacgtccatgacggcgccgaagtcggccttcacg 317
            ||||| ||||||||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 1023 agcttgcccttgagcctcttcttcagcacatccatgacggcgccaaagtcagccttcacg 964

                                      
Query: 318  ctgaccggagggttggtatacttgca 343
            || || || |||||||  ||||||||
Sbjct: 963  ctcacaggcgggttggagtacttgca 938
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>ref|NM_185677.1| Oryza sativa (japonica cultivar-group), Ozsa8028 predicted mRNA
          Length = 4848

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 223 ggtcagcagcagcaggaggacgaggg 248
           |||||||||||||||||||| |||||
Sbjct: 118 ggtcagcagcagcaggaggaggaggg 143
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 219    gaggggtcagcagcagcaggag 240
              ||||||||||||||||||||||
Sbjct: 128709 gaggggtcagcagcagcaggag 128688
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>emb|CR456637.3| Platypus DNA sequence from clone XX-104A18, complete sequence
          Length = 110477

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 226   cagcagcagcaggaggacgagg 247
             ||||||||||||||||||||||
Sbjct: 25235 cagcagcagcaggaggacgagg 25256
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>emb|CR388525.1| Gallus gallus finished cDNA, clone ChEST1020i2
          Length = 787

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 226 cagcagcagcaggaggacgagg 247
           ||||||||||||||||||||||
Sbjct: 186 cagcagcagcaggaggacgagg 207
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 226      cagcagcagcaggaggacgagg 247
                ||||||||||||||||||||||
Sbjct: 18376021 cagcagcagcaggaggacgagg 18376042
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 223     ggtcagcagcagcaggaggacgaggg 248
               |||||||||||||||||||| |||||
Sbjct: 3762107 ggtcagcagcagcaggaggaggaggg 3762132
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>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0014B15
          Length = 158821

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 223    ggtcagcagcagcaggaggacgaggg 248
              |||||||||||||||||||| |||||
Sbjct: 156335 ggtcagcagcagcaggaggaggaggg 156360
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0015E04
          Length = 152046

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 223   ggtcagcagcagcaggaggacgaggg 248
             |||||||||||||||||||| |||||
Sbjct: 20061 ggtcagcagcagcaggaggaggaggg 20086
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>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full
           insert sequence
          Length = 1843

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 226 cagcagcagcaggaggacgagg 247
           ||||||||||||||||||||||
Sbjct: 212 cagcagcagcaggaggacgagg 233
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 226      cagcagcagcaggaggacgagg 247
                ||||||||||||||||||||||
Sbjct: 18302247 cagcagcagcaggaggacgagg 18302268
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 226   cagcagcagcaggaggacgagg 247
             ||||||||||||||||||||||
Sbjct: 27920 cagcagcagcaggaggacgagg 27941
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>gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complete sequence
          Length = 198967

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   gcagcaggaggacgagggcat 251
             |||||||||||||||||||||
Sbjct: 75961 gcagcaggaggacgagggcat 75941
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     cgccgaagtcggccttcacgc 318
               |||||||||||||||||||||
Sbjct: 3194661 cgccgaagtcggccttcacgc 3194681



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      cagcagcagcaggaggacga 245
                ||||||||||||||||||||
Sbjct: 32606332 cagcagcagcaggaggacga 32606351
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>ref|XM_546389.2| PREDICTED: Canis familiaris similar to junctional adhesion molecule 3
            precursor (LOC489271), mRNA
          Length = 2389

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 227  agcagcagcaggaggacgagg 247
            |||||||||||||||||||||
Sbjct: 1103 agcagcagcaggaggacgagg 1083
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>ref|NM_206750.1| Drosophila melanogaster CG15603-PA (CG15603) mRNA, complete cds
          Length = 1020

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 gcagcaggaggacgagggcat 251
           |||||||||||||||||||||
Sbjct: 215 gcagcaggaggacgagggcat 235
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     cgccgaagtcggccttcacgc 318
               |||||||||||||||||||||
Sbjct: 3194772 cgccgaagtcggccttcacgc 3194792



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      cagcagcagcaggaggacga 245
                ||||||||||||||||||||
Sbjct: 32696842 cagcagcagcaggaggacga 32696861
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>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0083G16, complete sequence
          Length = 145590

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   cgccgaagtcggccttcacgc 318
             |||||||||||||||||||||
Sbjct: 19534 cgccgaagtcggccttcacgc 19554
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>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete
              sequence
          Length = 303344

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 231    gcagcaggaggacgagggcat 251
              |||||||||||||||||||||
Sbjct: 243875 gcagcaggaggacgagggcat 243855
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>ref|XM_469941.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 cagcagcagcaggaggacga 245
           ||||||||||||||||||||
Sbjct: 277 cagcagcagcaggaggacga 296
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>ref|XM_468423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 cagcagcagcaggaggacga 245
           ||||||||||||||||||||
Sbjct: 520 cagcagcagcaggaggacga 539
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>ref|XM_465863.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 ggtcagcagcagcaggagga 242
           ||||||||||||||||||||
Sbjct: 60  ggtcagcagcagcaggagga 41
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    cagcagcagcaggaggacga 245
              ||||||||||||||||||||
Sbjct: 137575 cagcagcagcaggaggacga 137556
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>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tcagcagcagcaggaggacg 244
             ||||||||||||||||||||
Sbjct: 20905 tcagcagcagcaggaggacg 20886
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>emb|CR682616.2|CNS0FPNO Tetraodon nigroviridis full-length cDNA
          Length = 1099

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 tcagcagcagcaggaggacgaggg 248
           |||||||||||||||||| |||||
Sbjct: 726 tcagcagcagcaggaggaggaggg 749
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>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004G10
          Length = 150379

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tcagcagcagcaggaggacg 244
             ||||||||||||||||||||
Sbjct: 53443 tcagcagcagcaggaggacg 53424
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      cagcagcagcaggaggacga 245
                ||||||||||||||||||||
Sbjct: 35152270 cagcagcagcaggaggacga 35152289



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 223      ggtcagcagcagcaggagga 242
                ||||||||||||||||||||
Sbjct: 17962036 ggtcagcagcagcaggagga 17962017
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     tcagcagcagcaggaggacg 244
               ||||||||||||||||||||
Sbjct: 8056792 tcagcagcagcaggaggacg 8056773
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 278     cttgaggacgtccatgacggcgcc 301
               ||||||||||||||||||| ||||
Sbjct: 6806910 cttgaggacgtccatgacgacgcc 6806887



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     agcagcaggaggacgagggc 249
               ||||||||||||||||||||
Sbjct: 3858848 agcagcaggaggacgagggc 3858829
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>ref|XM_341579.2| PREDICTED: Rattus norvegicus Niemann-Pick disease, type C1
           (predicted) (Npc1_predicted), mRNA
          Length = 3850

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 226 cagcagcagcaggaggacgagggc 249
           |||||||||||||||| |||||||
Sbjct: 55  cagcagcagcaggaggccgagggc 32
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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   cagcagcagcaggaggacga 245
             ||||||||||||||||||||
Sbjct: 47626 cagcagcagcaggaggacga 47645
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>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B06
          Length = 99637

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ggtcagcagcagcaggagga 242
             ||||||||||||||||||||
Sbjct: 96669 ggtcagcagcagcaggagga 96650
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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ggtcagcagcagcaggagga 242
             ||||||||||||||||||||
Sbjct: 23630 ggtcagcagcagcaggagga 23611
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>dbj|AK106020.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C01, full
           insert sequence
          Length = 1450

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 cagcagcagcaggaggacgagggc 249
           ||||||||||||||||| ||||||
Sbjct: 452 cagcagcagcaggaggaggagggc 475
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>dbj|AK071095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079N14, full
           insert sequence
          Length = 1460

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 cagcagcagcaggaggacgagggc 249
           ||||||||||||||||| ||||||
Sbjct: 462 cagcagcagcaggaggaggagggc 485
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
              complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    cagcagcagcaggaggacgagggc 249
              ||||||||||||||||| ||||||
Sbjct: 155155 cagcagcagcaggaggaggagggc 155132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,275,946
Number of Sequences: 3902068
Number of extensions: 3275946
Number of successful extensions: 64852
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64386
Number of HSP's gapped (non-prelim): 465
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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