ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26j24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109729.1| Zea mays CL17488_1 mRNA sequence 270 5e-69
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
3dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
4ref|XM_482600.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
5ref|NM_101454.1| Arabidopsis thaliana unknown protein AT1G15860 ... 48 0.034
6gb|BT009700.1| Arabidopsis thaliana At1g15860 gene, complete cds 48 0.034
7emb|BX813850.1|CNS0AC2O Arabidopsis thaliana Full-length cDNA Co... 48 0.034
8dbj|AK059480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.034
9gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thalian... 46 0.13
10gb|AC092241.2| Drosophila melanogaster clone BACR09F02, complete... 44 0.53
11gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence 44 0.53
12gb|AC084053.6| Mus Musculus Strain C57BL6/J chromosome 3 BAC, RP... 44 0.53
13gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complet... 44 0.53
14gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 44 0.53
15gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome 2L, r... 44 0.53
16gb|AE003631.4| Drosophila melanogaster chromosome 2L, section 40... 44 0.53
17gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, co... 42 2.1
18gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, co... 42 2.1
19gb|AC005601.1| Homo sapiens chromosome 5, BAC clone 343g16 (LBNL... 42 2.1
20gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, comp... 42 2.1
21gb|AC134446.4| Mus musculus BAC clone RP24-173D10 from chromosom... 42 2.1
22gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group ... 42 2.1
23gb|AC120779.24| Mus musculus strain C57BL/6J clone rp23-194d11 m... 42 2.1
24gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 m... 42 2.1
25emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 42 2.1
26gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 42 2.1
27gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, comp... 42 2.1
28gb|AY956813.1| Euprymna scolopes peptidoglycan recognition prote... 40 8.3
29gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
30gb|AC134524.5| Mus musculus BAC clone RP24-496E20 from chromosom... 40 8.3
31emb|CR792453.9| Zebrafish DNA sequence from clone DKEY-12F6 in l... 40 8.3
32emb|AL607148.8| Human DNA sequence from clone RP11-147D24 on chr... 40 8.3
33emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chr... 40 8.3
34emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chro... 40 8.3
35gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cance... 40 8.3
36emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 8.3
37dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 8.3
38emb|BX470070.27| Zebrafish DNA sequence from clone CH211-194B21 ... 40 8.3
39emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in... 40 8.3
40gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 8.3
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
42gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosom... 40 8.3
43gb|AY954970.1| Staphylococcus phage Twort, complete genome 40 8.3
44emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in... 40 8.3
45dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
46emb|AJ504790.1|LPN504790 Legionella pneumophila ORF2, lag-1 gene... 40 8.3
47emb|AJ300467.1|LPN300467 Legionella pneumophila lag-1 gene for O... 40 8.3
48dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
49dbj|AB021170.1| Candida albicans gene for alpha subunit of geran... 40 8.3
50emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, ... 40 8.3
51emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in... 40 8.3
52emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 i... 40 8.3
53gb|AY953371.1| Brevibacillus texasporus strain ATCC PTA-5854 non... 40 8.3
54gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosom... 40 8.3 
>gb|AY109729.1| Zea mays CL17488_1 mRNA sequence
          Length = 911

 Score =  270 bits (136), Expect = 5e-69
 Identities = 229/260 (88%)
 Strand = Plus / Plus

                                                                       
Query: 345 tcaacaaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgat 404
           |||||||||||||||| ||| |||||||| ||  |||||| ||| ||||||||||| |||
Sbjct: 155 tcaacaaaattgtctagaatcaaaggccaggcaaggtctgaatcataattgtcaagcgat 214

                                                                       
Query: 405 gggaagtttatctcattgcagaaccgaagaaatcccatccattgatccatgtttataacc 464
           ||||||||||||||||| ||||| |||| |||||||||||| || |||||  |||| |||
Sbjct: 215 gggaagtttatctcattacagaaacgaataaatcccatccactggtccattgttatcacc 274

                                                                       
Query: 465 ttgtactcattttggtgcttgaggtaattaataagtttttcaacctgcgggcggaactgc 524
           ||||| |||||||||| | ||||||||||| |||| || |||||||| ||||||||||||
Sbjct: 275 ttgtagtcattttggtacatgaggtaattattaagcttgtcaacctgagggcggaactgc 334

                                                                       
Query: 525 aagctcagcactagattcaacaactcacaagcaacaggtatttctatacacttcttcttg 584
           ||||  |  |||||||||| ||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 335 aagcctaatactagattcagcaactcacaagcaactggtatttctatacacttcttctta 394

                               
Query: 585 tcctctgttaggcaataacg 604
           |||||||| |||||||||||
Sbjct: 395 tcctctgtgaggcaataacg 414
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 5e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                            
Query: 290      catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 349
                ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 21352491 catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 21352432

                                                                            
Query: 350      aaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgatgggaa 409
                ||||||||| ||||| | |||||||||  |||||| ||| ||||||||||||||||||||
Sbjct: 21352431 aaaattgtccaaaataagaggccaagcaaggtctgaatcataattgtcaagtgatgggaa 21352372

                        
Query: 410      gtttatct 417
                ||||||||
Sbjct: 21352371 gtttatct 21352364



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                            
Query: 482      cttgaggtaattaataagtttttcaacctgcgggcggaactgcaagctcagcactagatt 541
                ||||||||| |||| |||||| |||||||| ||||| |||||||| | ||  ||||||||
Sbjct: 21352067 cttgaggtagttaacaagtttgtcaacctgggggcgaaactgcaaccccaatactagatt 21352008

                                                                  
Query: 542      caacaactcacaagcaacaggtatttctatacacttcttcttgtcctctg 591
                || || |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 21352007 cagcagctcacaagcaactggtatttctatacacttcttcttatcctctg 21351958



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 416      ctcattgcagaaccgaagaaatcccatccattgatccatgtttataaccttgtactcatt 475
                |||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||| |
Sbjct: 21352227 ctcattgcagaaacgaagaaagcccatccactggtccatgtttatcaccttgtattcact 21352168

                        
Query: 476      ttggtgct 483
                ||||||||
Sbjct: 21352167 ttggtgct 21352160
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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0524F03
          Length = 167696

 Score =  127 bits (64), Expect = 5e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                         
Query: 290   catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 349
             ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 52416 catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 52357

                                                                         
Query: 350   aaaattgtctaaaattaaaggccaagcttggtctgcatcgtaattgtcaagtgatgggaa 409
             ||||||||| ||||| | |||||||||  |||||| ||| ||||||||||||||||||||
Sbjct: 52356 aaaattgtccaaaataagaggccaagcaaggtctgaatcataattgtcaagtgatgggaa 52297

                     
Query: 410   gtttatct 417
             ||||||||
Sbjct: 52296 gtttatct 52289



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                         
Query: 482   cttgaggtaattaataagtttttcaacctgcgggcggaactgcaagctcagcactagatt 541
             ||||||||| |||| |||||| |||||||| ||||| |||||||| | ||  ||||||||
Sbjct: 51992 cttgaggtagttaacaagtttgtcaacctgggggcgaaactgcaaccccaatactagatt 51933

                                                               
Query: 542   caacaactcacaagcaacaggtatttctatacacttcttcttgtcctctg 591
             || || |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 51932 cagcagctcacaagcaactggtatttctatacacttcttcttatcctctg 51883



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 416   ctcattgcagaaccgaagaaatcccatccattgatccatgtttataaccttgtactcatt 475
             |||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||| |
Sbjct: 52152 ctcattgcagaaacgaagaaagcccatccactggtccatgtttatcaccttgtattcact 52093

                     
Query: 476   ttggtgct 483
             ||||||||
Sbjct: 52092 ttggtgct 52085
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>ref|XM_482600.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score =  125 bits (63), Expect = 2e-25
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                       
Query: 482 cttgaggtaattaataagtttttcaacctgcgggcggaactgcaagctcagcactagatt 541
           ||||||||| |||| |||||| |||||||| ||||| |||||||| | ||  ||||||||
Sbjct: 255 cttgaggtagttaacaagtttgtcaacctgggggcgaaactgcaaccccaatactagatt 196

                                                                       
Query: 542 caacaactcacaagcaacaggtatttctatacacttcttcttgtcctctgttaggcaata 601
           || || |||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 195 cagcagctcacaagcaactggtatttctatacacttcttcttatcctctgtcaggcagta 136

              
Query: 602 acg 604
           |||
Sbjct: 135 acg 133



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 396 tcaagtgatgggaagtttatct 417
           ||||||||||||||||||||||
Sbjct: 306 tcaagtgatgggaagtttatct 285
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>ref|NM_101454.1| Arabidopsis thaliana unknown protein AT1G15860 mRNA, complete cds
          Length = 869

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttatctcattgcagaaccgaagaaatcccatccattgatccatgtttataaccttgtact 471
           ||||||| || ||||||||   || |||||||||||| ||||||||||| || ||||| |
Sbjct: 586 ttatctcgttacagaaccggtaaagtcccatccattggtccatgtttatcactttgtagt 527

                   
Query: 472 cattttgg 479
           | ||||||
Sbjct: 526 cgttttgg 519
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>gb|BT009700.1| Arabidopsis thaliana At1g15860 gene, complete cds
          Length = 684

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttatctcattgcagaaccgaagaaatcccatccattgatccatgtttataaccttgtact 471
           ||||||| || ||||||||   || |||||||||||| ||||||||||| || ||||| |
Sbjct: 592 ttatctcgttacagaaccggtaaagtcccatccattggtccatgtttatcactttgtagt 533

                   
Query: 472 cattttgg 479
           | ||||||
Sbjct: 532 cgttttgg 525
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>emb|BX813850.1|CNS0AC2O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB42ZG10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 890

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttatctcattgcagaaccgaagaaatcccatccattgatccatgtttataaccttgtact 471
           ||||||| || ||||||||   || |||||||||||| ||||||||||| || ||||| |
Sbjct: 646 ttatctcgttacagaaccggtaaagtcccatccattggtccatgtttatcactttgtagt 587

                   
Query: 472 cattttgg 479
           | ||||||
Sbjct: 586 cgttttgg 579
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>dbj|AK059480.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F04, full
           insert sequence
          Length = 527

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 290 catcttcaccaccactcgagtacaagagggctaattttcatttgctcttaaccattcaac 349
           ||||||||||| |||| || || ||||| ||||| ||| |||| ||| ||||||||||||
Sbjct: 60  catcttcaccagcacttgaataaaagagagctaacttttattttctcgtaaccattcaac 1
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>gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 77521

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 437   tcccatccattgatccatgtttataaccttgtactcattttgg 479
             |||||||||||| ||||||||||| || ||||| || ||||||
Sbjct: 69120 tcccatccattggtccatgtttatcactttgtagtcgttttgg 69078
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>gb|AC092241.2| Drosophila melanogaster clone BACR09F02, complete sequence
          Length = 178190

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 463    ccttgtactcattttggtgctt 484
              ||||||||||||||||||||||
Sbjct: 100584 ccttgtactcattttggtgctt 100563
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>gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence
          Length = 251756

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 445    attgatccatgtttataaccttgtac 470
              |||||||||||||||| |||||||||
Sbjct: 107031 attgatccatgtttatcaccttgtac 107056
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>gb|AC084053.6| Mus Musculus Strain C57BL6/J chromosome 3 BAC, RP23-158F1, complete
             sequence
          Length = 199415

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 445   attgatccatgtttataaccttgtac 470
             |||||||||| |||||||||||||||
Sbjct: 58320 attgatccatatttataaccttgtac 58345
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>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence
          Length = 177270

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 351   aaattgtctaaaattaaaggccaagc 376
             |||||||| |||||||||||||||||
Sbjct: 64523 aaattgtcaaaaattaaaggccaagc 64548
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>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 229621

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 444   cattgatccatgtttataaccttgta 469
             ||||||||||| ||||||||||||||
Sbjct: 94207 cattgatccatatttataaccttgta 94182
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>gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome 2L, region 32D3-32E2, P1 clones
             DS05055 and DS02287, complete sequence
          Length = 94440

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 463   ccttgtactcattttggtgctt 484
             ||||||||||||||||||||||
Sbjct: 25601 ccttgtactcattttggtgctt 25580
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>gb|AE003631.4| Drosophila melanogaster chromosome 2L, section 40 of 83 of the complete
              sequence
          Length = 256684

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 463    ccttgtactcattttggtgctt 484
              ||||||||||||||||||||||
Sbjct: 145419 ccttgtactcattttggtgctt 145398
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>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence
          Length = 191726

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 245   ctccaaaattctccaaggtgatttctgag 273
             ||||||||| ||| |||||||||||||||
Sbjct: 56593 ctccaaaatcctcaaaggtgatttctgag 56621
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>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence
          Length = 178437

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 245    ctccaaaattctccaaggtgatttctgag 273
              ||||||||| ||| |||||||||||||||
Sbjct: 161932 ctccaaaatcctcaaaggtgatttctgag 161960
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>gb|AC005601.1| Homo sapiens chromosome 5, BAC clone 343g16 (LBNL H180), complete
             sequence
          Length = 38413

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    atgccaacatgttcatttaagactt 41
             ||||||| |||||||||||||||||
Sbjct: 27991 atgccaatatgttcatttaagactt 27967
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>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence
          Length = 193216

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 245    ctccaaaattctccaaggtgatttctgag 273
              ||||||||| ||| |||||||||||||||
Sbjct: 186892 ctccaaaatcctcaaaggtgatttctgag 186864
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>gb|AC134446.4| Mus musculus BAC clone RP24-173D10 from chromosome 17, complete
             sequence
          Length = 131657

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 450   tccatgtttataaccttgtac 470
             |||||||||||||||||||||
Sbjct: 30062 tccatgtttataaccttgtac 30082
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>gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group C, member 1
             (glucocorticoid receptor) (NR3C1) gene, complete cds
          Length = 127687

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 17    atgccaacatgttcatttaagactt 41
             ||||||| |||||||||||||||||
Sbjct: 78838 atgccaatatgttcatttaagactt 78862
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>gb|AC120779.24| Mus musculus strain C57BL/6J clone rp23-194d11 map 17, complete
             sequence
          Length = 235634

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 450   tccatgtttataaccttgtac 470
             |||||||||||||||||||||
Sbjct: 22950 tccatgtttataaccttgtac 22970
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>gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 map 17, complete sequence
          Length = 241570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 450    tccatgtttataaccttgtac 470
              |||||||||||||||||||||
Sbjct: 227451 tccatgtttataaccttgtac 227471
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>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    tcatttgctcttaaccattca 347
              |||||||||||||||||||||
Sbjct: 174620 tcatttgctcttaaccattca 174640
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    atgccaacatgttcatttaagactt 41
             ||||||| |||||||||||||||||
Sbjct: 44247 atgccaatatgttcatttaagactt 44223
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>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence
          Length = 237712

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 17    atgccaacatgttcatttaagactt 41
             ||||||| |||||||||||||||||
Sbjct: 56683 atgccaatatgttcatttaagactt 56707
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>gb|AY956813.1| Euprymna scolopes peptidoglycan recognition protein 3 precursor
            (PGRP3) mRNA, complete cds
          Length = 2154

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 92   tacaaatatagagaatgtcgacat 115
            |||| |||||||||||||||||||
Sbjct: 1322 tacagatatagagaatgtcgacat 1345
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>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
              complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    catcttcaccaccactcgag 309
              ||||||||||||||||||||
Sbjct: 124810 catcttcaccaccactcgag 124791
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>gb|AC134524.5| Mus musculus BAC clone RP24-496E20 from chromosome Y, complete sequence
          Length = 157055

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   catttagattgcatcttcac 298
             ||||||||||||||||||||
Sbjct: 37175 catttagattgcatcttcac 37156
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>emb|CR792453.9| Zebrafish DNA sequence from clone DKEY-12F6 in linkage group 3,
             complete sequence
          Length = 198873

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   attcaacaactcacaagcaa 558
             ||||||||||||||||||||
Sbjct: 95364 attcaacaactcacaagcaa 95383
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>emb|AL607148.8| Human DNA sequence from clone RP11-147D24 on chromosome 13, complete
            sequence
          Length = 81848

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  ctgctaagtgtttcaagtat 154
            ||||||||||||||||||||
Sbjct: 8588 ctgctaagtgtttcaagtat 8569
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>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part
              of the PDE4B gene for phosphodiesterase 4B, cAMP-specific
              (phosphodiesterase E4 dunce homolog, Drosophila), complete
              sequence
          Length = 152113

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    atcctccaaaattctccaag 261
              ||||||||||||||||||||
Sbjct: 143371 atcctccaaaattctccaag 143352
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>emb|AL451127.6| Human DNA sequence from clone RP11-128I7 on chromosome 9 Contains a
            novel gene, complete sequence
          Length = 108958

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  aaaattgtctaaaattaaag 369
            ||||||||||||||||||||
Sbjct: 4110 aaaattgtctaaaattaaag 4129
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>gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 113201

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  cttgatctgcatcctccaaa 251
            ||||||||||||||||||||
Sbjct: 5048 cttgatctgcatcctccaaa 5029
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    cttgaggtaattaataagtt 501
              ||||||||||||||||||||
Sbjct: 922590 cttgaggtaattaataagtt 922609
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 284     agattgcatcttcaccacca 303
               ||||||||||||||||||||
Sbjct: 1254630 agattgcatcttcaccacca 1254649
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>emb|BX470070.27| Zebrafish DNA sequence from clone CH211-194B21 in linkage group 15,
             complete sequence
          Length = 228177

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 326   ttcatttgctcttaaccattcaacaaaattgt 357
             |||||||||||| ||||| |||| ||||||||
Sbjct: 94514 ttcatttgctctcaaccaatcaaaaaaattgt 94483
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>emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in linkage group 16,
              complete sequence
          Length = 220538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    aaaattgtctaaaattaaag 369
              ||||||||||||||||||||
Sbjct: 164522 aaaattgtctaaaattaaag 164541
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 482    cttgaggtaattaataagtttttc 505
              |||||||||||| |||||||||||
Sbjct: 736880 cttgaggtaattcataagtttttc 736857



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 551    acaagcaacaggtatttctataca 574
              ||||||||||| ||||||||||||
Sbjct: 518543 acaagcaacagatatttctataca 518520
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 290     catcttcaccaccactcgag 309
               ||||||||||||||||||||
Sbjct: 9352865 catcttcaccaccactcgag 9352846
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>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete
             sequence
          Length = 189362

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttcaacaaaattgtctaaaa 363
             ||||||||||||||||||||
Sbjct: 52136 ttcaacaaaattgtctaaaa 52117
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>gb|AY954970.1| Staphylococcus phage Twort, complete genome
          Length = 130706

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    aggtaattaataagtttttc 505
              ||||||||||||||||||||
Sbjct: 114902 aggtaattaataagtttttc 114921
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>emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in linkage group 23,
              complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     gctcttgaaactacacacct 75
              ||||||||||||||||||||
Sbjct: 115825 gctcttgaaactacacacct 115806
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>dbj|AK111524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P07, full
            insert sequence
          Length = 1396

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  catcttcaccaccactcgag 309
            ||||||||||||||||||||
Sbjct: 1052 catcttcaccaccactcgag 1033
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>emb|AJ504790.1|LPN504790 Legionella pneumophila ORF2, lag-1 gene and ORF3, isolate Sweden 3
          Length = 6087

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 482  cttgaggtaattaataagtt 501
            ||||||||||||||||||||
Sbjct: 4920 cttgaggtaattaataagtt 4901
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>emb|AJ300467.1|LPN300467 Legionella pneumophila lag-1 gene for O-acetyltransferase
          Length = 3307

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cttgaggtaattaataagtt 501
           ||||||||||||||||||||
Sbjct: 14  cttgaggtaattaataagtt 33
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>dbj|AK104927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-H11, full
            insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  catcttcaccaccactcgag 309
            ||||||||||||||||||||
Sbjct: 1051 catcttcaccaccactcgag 1032
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>dbj|AB021170.1| Candida albicans gene for alpha subunit of geranylgeranyl
           transferaes type 2, complete cds, strain ATCC10231
          Length = 1265

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 taattttcatttgctcttaa 340
           ||||||||||||||||||||
Sbjct: 260 taattttcatttgctcttaa 241
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>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 342    cattcaacaaaattgtctaaaatt 365
              |||||||||||||||| |||||||
Sbjct: 183290 cattcaacaaaattgtataaaatt 183313
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>emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in linkage group 11,
             complete sequence
          Length = 101488

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   cagaaccgaagaaatcccat 442
             ||||||||||||||||||||
Sbjct: 82163 cagaaccgaagaaatcccat 82182
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>emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 in linkage group 5,
            complete sequence
          Length = 121726

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  cattcaacaaaattgtctaaaatt 365
            |||||||||||||||| |||||||
Sbjct: 4442 cattcaacaaaattgtataaaatt 4465
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>gb|AY953371.1| Brevibacillus texasporus strain ATCC PTA-5854 nonribosomal peptide
             synthetase operon, complete sequence
          Length = 50646

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 325   tttcatttgctcttaaccattcaacaaa 352
             |||||||| ||| |||||||||||||||
Sbjct: 23813 tttcatttactcgtaaccattcaacaaa 23786
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>gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosome y, complete sequence
          Length = 169086

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    catttagattgcatcttcac 298
              ||||||||||||||||||||
Sbjct: 113057 catttagattgcatcttcac 113038


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,114,742
Number of Sequences: 3902068
Number of extensions: 7114742
Number of successful extensions: 135871
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135559
Number of HSP's gapped (non-prelim): 312
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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