| Clone Name | rbags26j17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123979.36| Papio anubis clone rp41-59o15, complete sequence Length = 177164 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 tgtctgaatttctgaaaggca 382 ||||||||||||||||||||| Sbjct: 43109 tgtctgaatttctgaaaggca 43129
>gb|AY621326.1| Gallus gallus beta-defensin 11 (GAL11) gene, complete cds Length = 9480 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 551 gcacaagttgtgtcattgtgcaga 574 |||||||||||||||| ||||||| Sbjct: 6614 gcacaagttgtgtcatggtgcaga 6637
>ref|XM_539179.2| PREDICTED: Canis familiaris similar to NIK and IKK{beta} binding protein (LOC482058), mRNA Length = 3444 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ctcaccagtggagtggagtt 524 |||||||||||||||||||| Sbjct: 1861 ctcaccagtggagtggagtt 1880
>ref|XM_807507.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508303.50) partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 caaatctggacgtgtaaatg 107 |||||||||||||||||||| Sbjct: 336 caaatctggacgtgtaaatg 317
>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete sequence Length = 185494 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 attgatattttcagagacta 208 |||||||||||||||||||| Sbjct: 133320 attgatattttcagagacta 133301
>gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complete sequence Length = 193055 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gaatgagaatgatcttcatg 354 |||||||||||||||||||| Sbjct: 36744 gaatgagaatgatcttcatg 36763
>gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosome 6, complete sequence Length = 147836 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gaatgagaatgatcttcatg 354 |||||||||||||||||||| Sbjct: 121652 gaatgagaatgatcttcatg 121671
>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 636 tccctgtcaaagccccaagttcat 659 ||||| |||||||||||||||||| Sbjct: 100308 tccctctcaaagccccaagttcat 100285
>gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, complete sequence Length = 193665 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 atgcaaacctgatctacaat 403 |||||||||||||||||||| Sbjct: 92072 atgcaaacctgatctacaat 92091
>gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, complete sequence Length = 198784 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 tcatctccagatctgcagca 611 |||||||||||||||||||| Sbjct: 79969 tcatctccagatctgcagca 79950
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgatattttcagagactaat 210 |||||||||||||||||||| Sbjct: 7001603 tgatattttcagagactaat 7001584
>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10 Length = 200968 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgatattttcagagactaat 210 |||||||||||||||||||| Sbjct: 28292 tgatattttcagagactaat 28273
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0668C05 Length = 142081 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgatattttcagagactaat 210 |||||||||||||||||||| Sbjct: 125418 tgatattttcagagactaat 125399
>gb|AC004068.1|AC004068 Homo sapiens chromosome 4 clone B380B14 map 4q25, complete sequence Length = 110401 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 atgcaaacctgatctacaat 403 |||||||||||||||||||| Sbjct: 104156 atgcaaacctgatctacaat 104137
>dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1896H10 Length = 173785 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 aaaagcacaagtttcttctg 431 |||||||||||||||||||| Sbjct: 27067 aaaagcacaagtttcttctg 27086 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,013,826 Number of Sequences: 3902068 Number of extensions: 5013826 Number of successful extensions: 87112 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87071 Number of HSP's gapped (non-prelim): 41 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)