ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC123979.36| Papio anubis clone rp41-59o15, complete sequence 42 2.3
2gb|AY621326.1| Gallus gallus beta-defensin 11 (GAL11) gene, comp... 40 9.0
3ref|XM_539179.2| PREDICTED: Canis familiaris similar to NIK and ... 40 9.0
4ref|XM_807507.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.0
5gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome... 40 9.0
6gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complet... 40 9.0
7gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosom... 40 9.0
8gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cance... 40 9.0
9gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, comple... 40 9.0
10gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, comp... 40 9.0
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
12dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
13dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
14gb|AC004068.1|AC004068 Homo sapiens chromosome 4 clone B380B14 m... 40 9.0
15dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 9.0

>gb|AC123979.36| Papio anubis clone rp41-59o15, complete sequence
          Length = 177164

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 362   tgtctgaatttctgaaaggca 382
             |||||||||||||||||||||
Sbjct: 43109 tgtctgaatttctgaaaggca 43129



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>gb|AY621326.1| Gallus gallus beta-defensin 11 (GAL11) gene, complete cds
          Length = 9480

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 551  gcacaagttgtgtcattgtgcaga 574
            |||||||||||||||| |||||||
Sbjct: 6614 gcacaagttgtgtcatggtgcaga 6637



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>ref|XM_539179.2| PREDICTED: Canis familiaris similar to NIK and IKK{beta} binding
            protein (LOC482058), mRNA
          Length = 3444

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  ctcaccagtggagtggagtt 524
            ||||||||||||||||||||
Sbjct: 1861 ctcaccagtggagtggagtt 1880



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>ref|XM_807507.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508303.50) partial mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 88  caaatctggacgtgtaaatg 107
           ||||||||||||||||||||
Sbjct: 336 caaatctggacgtgtaaatg 317



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>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete sequence
          Length = 185494

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    attgatattttcagagacta 208
              ||||||||||||||||||||
Sbjct: 133320 attgatattttcagagacta 133301



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>gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complete sequence
          Length = 193055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   gaatgagaatgatcttcatg 354
             ||||||||||||||||||||
Sbjct: 36744 gaatgagaatgatcttcatg 36763



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>gb|AC145574.5| Mus musculus BAC clone RP24-411C16 from chromosome 6, complete sequence
          Length = 147836

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    gaatgagaatgatcttcatg 354
              ||||||||||||||||||||
Sbjct: 121652 gaatgagaatgatcttcatg 121671



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>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 163461

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 636    tccctgtcaaagccccaagttcat 659
              ||||| ||||||||||||||||||
Sbjct: 100308 tccctctcaaagccccaagttcat 100285



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>gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, complete sequence
          Length = 193665

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   atgcaaacctgatctacaat 403
             ||||||||||||||||||||
Sbjct: 92072 atgcaaacctgatctacaat 92091



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>gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, complete sequence
          Length = 198784

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   tcatctccagatctgcagca 611
             ||||||||||||||||||||
Sbjct: 79969 tcatctccagatctgcagca 79950



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     tgatattttcagagactaat 210
               ||||||||||||||||||||
Sbjct: 7001603 tgatattttcagagactaat 7001584



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>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0066H10
          Length = 200968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tgatattttcagagactaat 210
             ||||||||||||||||||||
Sbjct: 28292 tgatattttcagagactaat 28273



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>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0668C05
          Length = 142081

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    tgatattttcagagactaat 210
              ||||||||||||||||||||
Sbjct: 125418 tgatattttcagagactaat 125399



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>gb|AC004068.1|AC004068 Homo sapiens chromosome 4 clone B380B14 map 4q25, complete sequence
          Length = 110401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    atgcaaacctgatctacaat 403
              ||||||||||||||||||||
Sbjct: 104156 atgcaaacctgatctacaat 104137



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>dbj|AP000355.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1896H10
          Length = 173785

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   aaaagcacaagtttcttctg 431
             ||||||||||||||||||||
Sbjct: 27067 aaaagcacaagtttcttctg 27086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,013,826
Number of Sequences: 3902068
Number of extensions: 5013826
Number of successful extensions: 87112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87071
Number of HSP's gapped (non-prelim): 41
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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