>FTHS_PICTO (Q6KZM3) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 535

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 334 DHMPMVFHT*PEPKFLHRTSAMLGRVPSFACFDSISTPFVGKADIG 197
           +H+P + HT P     H TS++LG +     FD + T     +D+G
Sbjct: 246 EHVPAIIHTGPFGNIAHGTSSILGDIIGLKMFDYLVTEAGFGSDLG 291

>WRK63_ARATH (Q9C6H5) Probable WRKY transcription factor 63 (WRKY DNA-binding|
           protein 63)
          Length = 241

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 172 MAPLYPT-SNQYQLFPQKGLKYYRNKQ---KMERGLTWRKYGAK 291
           MA L P  S++ ++   KGL+ YR+     +++ G TWRKYG K
Sbjct: 71  MAGLVPQRSSKKKICGVKGLEIYRDDSPNPRLDDGFTWRKYGQK 114

>WRK64_ARATH (Q9C557) Probable WRKY transcription factor 64 (WRKY DNA-binding|
           protein 64)
          Length = 249

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
 Frame = +1

Query: 193 SNQYQLFPQKGLKYYRNKQKMER---GLTWRKYG---AKISAQVRC------GKPLACDL 336
           S++ + +  + L+YYR++    R   G TWRKYG    K S   RC       K   C+ 
Sbjct: 79  SSKKKYYGAEDLEYYRDESPTPRPDDGFTWRKYGQKTIKTSPYQRCYYRCTYAKDQNCNA 138

Query: 337 AKRYWM 354
            KR  M
Sbjct: 139 RKRVQM 144

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
 Frame = +1

Query: 22  DKNSYTNLTGTRYNRLHQRHDIQLITHCTKR-------QGNMQRMGRAAEN-----VCQV 165
           D+N Y+N   T  N+LH++H  ++     K+       Q +M+  G A  N     +  +
Sbjct: 496 DRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRAEGEAEPNETSGGMGAI 555

Query: 166 PSMAPLYPTSNQYQ 207
           PS A L  TS+  Q
Sbjct: 556 PSNAELPGTSDARQ 569

>HOX7P_XENLA (P35993) Homeobox protein XHOX-7.1' (Fragment)|
          Length = 291

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 217 QKGLKYYR-NKQKMERGLTWRKYGAKISAQVRCGKPLACDLAK 342
           QKGLK  R N++  E G +W K G   S   R   P +C L K
Sbjct: 114 QKGLKPRRSNRKNSEDGTSWSKDGGSYSPPPRHLSPSSCTLRK 156

>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
           factor-like domains 1)
          Length = 4351

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 466 KCEVIKDITVGIKS*AGIAAEDIGNIALLMAMNYYVNTSSSALRDHMP 323
           K  V+  IT  I   AG+ ++++G        NY +N  S    DH P
Sbjct: 672 KTGVLTHITKTILQSAGLQSQELGEEEFTSLSNYQINHHSPQFEDHFP 719

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +1

Query: 166 PSMAPLYPTSN-------QYQLFPQKGLKYYRNKQKMERGLTWRKYGAKISAQV 306
           P++ P++P             L PQ+  +  R+    E+G+TW  YGA +  +V
Sbjct: 802 PAVPPVFPEVRVRPGSVLAAALAPQEATEPVRDVSWDEKGMTWEVYGASMEVEV 855

>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
 Frame = +1

Query: 22  DKNSYTNLTGTRYNRLHQRHDIQLITHCTKR-------QGNMQRMGRAAEN-----VCQV 165
           D+N Y+N   T  ++LH++H  ++     K+       Q +M+  G A  N     +  +
Sbjct: 496 DRNQYSNPAETFLSKLHRKHSREVKHQAAKKAKRLAEIQESMRAEGEAESNEMSGGMGAI 555

Query: 166 PSMAPLYPTSNQYQ 207
           PS A L  TS   Q
Sbjct: 556 PSNAELPSTSGARQ 569

>PEMT_MOUSE (Q61907) Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17)|
           (PEAMT) (PEMT) (PEMT2)
          Length = 198

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = -1

Query: 279 LPPC*AAFHLLLVSIVFQPLLWEKLILVRCWV*RSHRRNLTDIFGSTAHSLHIALPFGAV 100
           + P   +F   +++IVF PL W    +V  W  R+  R L+  FGS     H+A      
Sbjct: 7   MDPTEPSFVAAVITIVFNPLFWN---VVARWEQRT--RKLSRAFGSP----HLA------ 51

Query: 99  CY*LDIVSLMQPIVSCSC 46
           CY L I  L+  I+   C
Sbjct: 52  CYSLGICILLLNILRSHC 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,407,382
Number of Sequences: 219361
Number of extensions: 1725882
Number of successful extensions: 3952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3951
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)